Guide to the Human Genome
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Name: LOC100293547 Sequence: fasta or formatted (254aa) NCBI GI: 239752881
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         18           2
 C cysteine            0.4          1           1
 D aspartate           5.9         15           2
 E glutamate           5.9         15           1
 F phenylalanine       4.7         12           2
 G glycine            10.6         27           2
 H histidine           5.9         15           1
 I isoleucine          3.5          9           1
 K lysine              2.4          6           1
 L leucine            15.7         40           2
 M methionine          0.8          2           2
 N asparagine          2.0          5           1
 P proline             7.1         18           2
 Q glutamine           4.7         12           1
 R arginine            5.1         13           3
 S serine              6.3         16           1
 T threonine           2.8          7           1
 V valine              8.3         21           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132733          1.000   PREDICTED: hypothetical protein 
LOC100287935          1.000   PREDICTED: hypothetical protein XP_002342146 
NBEAL2                0.023   neurobeachin-like 2 
SDF2                  0.010   stromal cell-derived factor 2 precursor 
TMCO6                 0.010   transmembrane and coiled-coil domains 6 
FAM57B                0.008   hypothetical protein LOC83723 
LOC100292391          0.006   PREDICTED: hypothetical protein 
LOC100290001          0.006   PREDICTED: hypothetical protein XP_002346593 
LOC100288391          0.006   PREDICTED: hypothetical protein XP_002342434 
AQP2                  0.006   aquaporin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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