Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ALG9 Sequence: fasta or formatted (611aa) NCBI GI: 118026933
Description:

asparagine-linked glycosylation 9 protein isoform b

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [618aa] asparagine-linked glycosylation 9 protein isoform a
alt prot [440aa] asparagine-linked glycosylation 9 protein isoform d
alt prot [447aa] asparagine-linked glycosylation 9 protein isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         51           2
 C cysteine            2.3         14           1
 D aspartate           2.9         18           1
 E glutamate           4.3         26           2
 F phenylalanine       7.2         44           2
 G glycine             5.7         35           2
 H histidine           2.6         16           1
 I isoleucine          4.7         29           2
 K lysine              4.1         25           2
 L leucine            13.3         81           3
 M methionine          2.1         13           2
 N asparagine          2.8         17           1
 P proline             6.1         37           1
 Q glutamine           2.5         15           1
 R arginine            5.1         31           1
 S serine              7.2         44           3
 T threonine           4.6         28           2
 V valine              5.6         34           3
 W tryptophan          2.5         15           1
 Y tyrosine            6.2         38           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   asparagine-linked glycosylation 9 protein isoform b... 
ALG9                  0.994   asparagine-linked glycosylation 9 protein isoform a...
ALG9                  0.717   asparagine-linked glycosylation 9 protein isoform d...
ALG9                  0.711   asparagine-linked glycosylation 9 protein isoform c...
PIGB                  0.034   phosphatidylinositol glycan, class B 
ALG12                 0.025   alpha-1,6-mannosyltransferase ALG12 
KDM3A                 0.008   jumonji domain containing 1A 
KDM3A                 0.008   jumonji domain containing 1A 
GPR173                0.005   G protein-coupled receptor 173 
LOC100293676          0.004   PREDICTED: similar to Fc fragment of IgG binding pr...
LOC100290309          0.004   PREDICTED: hypothetical protein XP_002348012 
LOC728767             0.004   PREDICTED: hypothetical protein 
LOC728767             0.004   PREDICTED: hypothetical protein 
RNASEN                0.004   ribonuclease III, nuclear isoform 2 
RNASEN                0.004   ribonuclease III, nuclear isoform 1 
FCGBP                 0.004   Fc fragment of IgG binding protein 
RLBP1L1               0.004   retinaldehyde binding protein 1-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press