Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751035 PREDICTED: hypothetical protein XP_002347680 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751035 PREDICTED: hypothetical protein XP_002347680 [Homo ... 271 1e-73
gi|169209547 PREDICTED: hypothetical protein [Homo sapiens] 265 6e-72
gi|113426180 PREDICTED: hypothetical protein [Homo sapiens] 265 6e-72
gi|169210552 PREDICTED: hypothetical protein [Homo sapiens] 42 1e-04
gi|239756297 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo ... 32 0.19
gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo ... 32 0.19
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 31 0.24
gi|47578107 delangin isoform B [Homo sapiens] 31 0.32
gi|47578105 delangin isoform A [Homo sapiens] 31 0.32
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|94536854 thrombospondin, type I, domain containing 4 [Homo sa... 30 0.54
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide... 29 0.92
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 29 0.92
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 29 0.92
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 29 0.92
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 29 0.92
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 29 1.2
gi|167860126 serine (or cysteine) proteinase inhibitor, clade B ... 29 1.2
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 29 1.2
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 28 2.1
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 28 2.7
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 27 4.6
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 27 4.6
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 27 4.6
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 27 4.6
gi|56786155 complement component 1, q subcomponent, C chain prec... 27 4.6
gi|166235903 complement component 1, q subcomponent, C chain pre... 27 4.6
gi|161377472 cyclin A1 isoform c [Homo sapiens] 27 4.6
>gi|239751035 PREDICTED: hypothetical protein XP_002347680 [Homo
sapiens]
Length = 130
Score = 271 bits (692), Expect = 1e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE 60
Query: 61 GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG 120
GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG
Sbjct: 61 GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|169209547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 126/130 (96%), Positives = 128/130 (98%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLC ENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
Query: 61 GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG 120
GY LSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGV+LP+DPEKEGALLPVDAG
Sbjct: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|113426180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 265 bits (678), Expect = 6e-72
Identities = 126/130 (96%), Positives = 128/130 (98%)
Query: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYE 60
MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLC ENSAVWSSYAPLGVAGYE
Sbjct: 1 MLQEASQGTLDPQALGTIKIKLEKGIGKKGCLEASGLRCLCGENSAVWSSYAPLGVAGYE 60
Query: 61 GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAG 120
GY LSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGV+LP+DPEKEGALLPVDAG
Sbjct: 61 GYGLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVLLPVDPEKEGALLPVDAG 120
Query: 121 KEKAPAARGP 130
KEKAPAARGP
Sbjct: 121 KEKAPAARGP 130
>gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 83 PWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAGKEKAPAARGP 130
P +P K+GA +DA KE + P+DP KEGAL PV G +P P
Sbjct: 69 PVDPEKEGALPPVDAGKEAALPPVDPGKEGALRPVVPGCVPSPRLLHP 116
Score = 41.2 bits (95), Expect = 2e-04
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 84 WNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAGKEKA 124
W P ++ +D KEG + P+D KE AL PVD GKE A
Sbjct: 59 WTPARKKHQPPVDPEKEGALPPVDAGKEAALPPVDPGKEGA 99
>gi|239756297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 525
Score = 32.0 bits (71), Expect = 0.14
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 340 PFGPGPQGGPPSRDRRHLGVQIGRVRAPLGSALPYPARSELAP 382
>gi|239750867 PREDICTED: hypothetical protein XP_002347588 [Homo
sapiens]
Length = 800
Score = 31.6 bits (70), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 440 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 482
>gi|239745228 PREDICTED: hypothetical protein XP_002343392 [Homo
sapiens]
Length = 488
Score = 31.6 bits (70), Expect = 0.19
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 83 PWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPVDAGKEKAP 125
P+ PG QG P + D R GV + G+ LP A E AP
Sbjct: 312 PFGPGPQGGPPSRDRRHLGVQIGRVRVPLGSALPYPARSELAP 354
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 31.2 bits (69), Expect = 0.24
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 64 LSSRVPPLPQLPRFRGWDFPWNPGKQGA-PTALDARKEGVMLPLDPEKEGALLPVDAGKE 122
LSS+ PPLP+ P + + P P A P + RKE P EK P+ G E
Sbjct: 756 LSSK-PPLPRKPLLQSFTLPHQPAPPDAGPGEREPRKE----PRTAEKR----PLRRGAE 806
Query: 123 KA--PAARGP 130
K+ PAA GP
Sbjct: 807 KSLPPAATGP 816
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 34 ASGLRCLCAENSAVWSSYAPLGVAGYEGYSLSSRVPPLPQL 74
+SG R + +NS V S YAP AGY YS S PQ+
Sbjct: 161 SSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQM 201
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 34 ASGLRCLCAENSAVWSSYAPLGVAGYEGYSLSSRVPPLPQL 74
+SG R + +NS V S YAP AGY YS S PQ+
Sbjct: 161 SSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQM 201
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 65 SSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARK--EGVMLPLDPEKEGALLPVDAGKE 122
SS PP P PW P GAPT A K E +L P P AG E
Sbjct: 64 SSAAPPTPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTE 123
Query: 123 KAPAAR 128
A A R
Sbjct: 124 SASAER 129
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 0.54
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 65 SSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARK--EGVMLPLDPEKEGALLPVDAGKE 122
SS PP P PW P GAPT A K E +L P P AG E
Sbjct: 64 SSAAPPTPHSSIPPRPPSPWGPRVWGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTE 123
Query: 123 KAPAAR 128
A A R
Sbjct: 124 SASAER 129
>gi|94536854 thrombospondin, type I, domain containing 4 [Homo
sapiens]
Length = 1018
Score = 30.0 bits (66), Expect = 0.54
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 47 VWSSYAPLGVAGYE--GYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVML 104
VW ++ P G + P LP+ R RG P P + A + A + V L
Sbjct: 55 VWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFADHVVSAVRTSVPL 114
Query: 105 PLDPEKEGALLPVDAGKEKAPAARG 129
++ AL DA ++ RG
Sbjct: 115 HRSRDETPALAGTDASRQGPTVLRG 139
>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
[Homo sapiens]
Length = 1634
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 29 KGCLEASGLRCLCAENSAVWSSYAPLGVAGYEGYSLSSRVPPLPQLPRFRGWDFPWNPGK 88
KG L L + V SS P + EG PPLP PR WD P P +
Sbjct: 120 KGSLSGDYLYIFDGSDGGVSSSPGPGDI---EGSCKKLSPPPLP--PRASIWDTPPLPPR 174
Query: 89 QGAPTA 94
+G+P++
Sbjct: 175 KGSPSS 180
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYSLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G + R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVMLPLDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYSLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G + R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVMLPLDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYSLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G + R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVMLPLDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 55 GVAGYEGYSLSSRVPPLPQ-LPRFRGWD-------FPWNPGKQGA--------PTALDAR 98
G AG +G + R PP P+ P +G FP PG++GA PT ++
Sbjct: 1164 GPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEG- 1222
Query: 99 KEGVMLPLDPEKEGALLPVDAGKEKAPAARG 129
P P GA++P G P +RG
Sbjct: 1223 -----FPGPPGLPGAIIPGQTGNRGPPGSRG 1248
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 28.9 bits (63), Expect = 1.2
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 55 GVAGYEGYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTAL----DARKEGVMLPLDPEK 110
GV G G +P LP LP G FP G G P G LP P
Sbjct: 570 GVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGP 629
Query: 111 EGALLPVDAGKEKAPAARG 129
G LP D GK+ P +G
Sbjct: 630 RG--LPGDKGKDGLPGQQG 646
>gi|167860126 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 5 [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 19 KIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYEGYSLSS 66
K K+EK I K CLE GL+ + +E+++ +S G++ +G +LS+
Sbjct: 275 KFKVEKMIDPKACLENLGLKHIFSEDTSDFS-----GMSETKGVALSN 317
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 28.9 bits (63), Expect = 1.2
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 55 GVAGYEGYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTAL----DARKEGVMLPLDPEK 110
GV G G +P LP LP G FP G G P G LP P
Sbjct: 569 GVIGEPGKDGVPGLPGLPGLPGDGGQGFPGEKGLPGLPGEKGHPGPPGLPGNGLPGLPGP 628
Query: 111 EGALLPVDAGKEKAPAARG 129
G LP D GK+ P +G
Sbjct: 629 RG--LPGDKGKDGLPGQQG 645
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 28.1 bits (61), Expect = 2.1
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 30/130 (23%)
Query: 11 DPQALGTIKIKLEKGIGKKGCLEASGLRCLCAENSAVWSSYAPLGVAGYEGYSLSSRVPP 70
+P A+ T I LE+ +GKKG + + P+G G G+ +P
Sbjct: 863 EPGAILTEDIPLERLMGKKG-------------EPGMHGAPGPMGPKGPPGHKGEFGLPG 909
Query: 71 LPQLPRFRGW---------------DFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALL 115
P P G P PG G P A+ +G + P+ P + +
Sbjct: 910 RPGRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAV-INIKGAIFPI-PVRPHCKM 967
Query: 116 PVDAGKEKAP 125
PVD +P
Sbjct: 968 PVDTAHPGSP 977
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 27.7 bits (60), Expect = 2.7
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 52 APLGVAGYEGYSLSSRVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKE 111
APLG AG+ G + PP P + P PG+ P G M+P
Sbjct: 980 APLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP--------GSMMP-GQHMP 1030
Query: 112 GALLPVDAGKEKAPAARGP 130
G ++P A P+ GP
Sbjct: 1031 GRMIPTVAANIH-PSGSGP 1048
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 26.9 bits (58), Expect = 4.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 67 RVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPV-DAGK-EKA 124
++PP PQ P +P + P K L +PE EG L PV +AG ++
Sbjct: 423 QLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPVLEAGDVDEG 482
Query: 125 PAAR 128
P AR
Sbjct: 483 PVAR 486
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 26.9 bits (58), Expect = 4.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 67 RVPPLPQLPRFRGWDFPWNPGKQGAPTALDARKEGVMLPLDPEKEGALLPV-DAGK-EKA 124
++PP PQ P +P + P K L +PE EG L PV +AG ++
Sbjct: 423 QLPPQPQTQPQTPTPAPQHPQQTWPPVNEGPPKPPTELEPEPEIEGLLTPVLEAGDVDEG 482
Query: 125 PAAR 128
P AR
Sbjct: 483 PVAR 486
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 26.9 bits (58), Expect = 4.6
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 53 PLGVAGYEGYSLSSRVPPLPQLPRFRGWDFPW------NPGKQGAPTALDARKEGVMLPL 106
P G+AG G + LP RG FP PGKQGAP A R G P+
Sbjct: 973 PQGLAGQRG------IVGLPGQRGERG--FPGLPGPSGEPGKQGAPGASGDR--GPPGPV 1022
Query: 107 DPEKEGALLPV-DAGKEKAPAARGP 130
P G P + G+E +P A GP
Sbjct: 1023 GP--PGLTGPAGEPGREGSPGADGP 1045
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 26.9 bits (58), Expect = 4.6
Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 53 PLGVAGYEGYSLSSRVPPLPQLPRFRGWDFPW------NPGKQGAPTALDARKEGVMLPL 106
P G+AG G + LP RG FP PGKQGAP A R G P+
Sbjct: 904 PQGLAGQRG------IVGLPGQRGERG--FPGLPGPSGEPGKQGAPGASGDR--GPPGPV 953
Query: 107 DPEKEGALLPV-DAGKEKAPAARGP 130
P G P + G+E +P A GP
Sbjct: 954 GP--PGLTGPAGEPGREGSPGADGP 976
>gi|56786155 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 55 GVAGYEGYSLSSRVPPLPQLPRFRG-------WDFPWNPGKQG--APTALDARKEGVMLP 105
G GY+G P +P +P RG P +PGK G P + + +P
Sbjct: 46 GKDGYDGLPGPKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIP 105
Query: 106 LDPEKEG 112
+P +EG
Sbjct: 106 GEPGEEG 112
>gi|166235903 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 26.9 bits (58), Expect = 4.6
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 55 GVAGYEGYSLSSRVPPLPQLPRFRG-------WDFPWNPGKQG--APTALDARKEGVMLP 105
G GY+G P +P +P RG P +PGK G P + + +P
Sbjct: 46 GKDGYDGLPGPKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIP 105
Query: 106 LDPEKEG 112
+P +EG
Sbjct: 106 GEPGEEG 112
>gi|161377472 cyclin A1 isoform c [Homo sapiens]
Length = 421
Score = 26.9 bits (58), Expect = 4.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 41 CAENSAVWSSYAPLGVAGYEGYSLSSRVPPLPQL 74
C N V + P +A + GYSLS VP L +L
Sbjct: 349 CLANYTVNKHFWPETLAAFTGYSLSEIVPCLSEL 382
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,803,868
Number of Sequences: 37866
Number of extensions: 280916
Number of successful extensions: 597
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 51
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.