Search of human proteins with 239750990

Search of human proteins with 239750990

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750990 PREDICTED: hypothetical protein XP_002347623
isoform 1 [Homo sapiens]
         (68 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo sap...   146   3e-36
gi|239750990 PREDICTED: hypothetical protein XP_002347623 isofor...   146   3e-36
gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo sap...   119   7e-28
gi|239750988 PREDICTED: hypothetical protein XP_002347624 isofor...   119   7e-28
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ...    69   6e-13
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    28   1.6  
gi|5730081 T-box, brain, 1 [Homo sapiens]                              27   3.5  

>gi|239756462 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 68

 Score =  146 bits (369), Expect = 3e-36
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239750990 PREDICTED: hypothetical protein XP_002347623 isoform
          1 [Homo sapiens]
          Length = 68

 Score =  146 bits (369), Expect = 3e-36
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239756460 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 68

 Score =  119 bits (297), Expect = 7e-28
 Identities = 58/68 (85%), Positives = 58/68 (85%)

Query: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSI     G   G  ADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239750988 PREDICTED: hypothetical protein XP_002347624 isoform
          2 [Homo sapiens]
          Length = 68

 Score =  119 bits (297), Expect = 7e-28
 Identities = 58/68 (85%), Positives = 58/68 (85%)

Query: 1  MSKERVISAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRW 60
          MSKERVISAAGVGALVPMEWSI     G   G  ADGAGPMEWGAEWSISADGAGRQCRW
Sbjct: 1  MSKERVISAAGVGALVPMEWSIMLMEWGAEWGISADGAGPMEWGAEWSISADGAGRQCRW 60

Query: 61 SRVPGPME 68
          SRVPGPME
Sbjct: 61 SRVPGPME 68


>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
          sapiens]
          Length = 417

 Score = 69.3 bits (168), Expect = 6e-13
 Identities = 33/45 (73%), Positives = 33/45 (73%), Gaps = 7/45 (15%)

Query: 18 MEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRWSR 62
          MEW       G   G  ADGAGPMEWGAEWSISADGAGRQCRWSR
Sbjct: 1  MEW-------GAEWGISADGAGPMEWGAEWSISADGAGRQCRWSR 38


>gi|38569493 potassium voltage-gated channel, subfamily H
           (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 15  LVPMEWSISADGVGRRVGHYADGAGPMEWGAEWSISADGAGRQCRWSRVPGP 66
           L PM W++  D   R V    DG G  +   ++S     +G +C  S  PGP
Sbjct: 809 LPPMPWNVPPDLSPRVVDGIEDGCGSDQ--PKFSFRVGQSGPECSSSPSPGP 858


>gi|5730081 T-box, brain, 1 [Homo sapiens]
          Length = 682

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 7/38 (18%)

Query: 8   SAAGVGALVPMEWSISADGVGRRVGHYADGAGPMEWGA 45
           +AAGV AL P++   +A   GR +G+YAD +G   WGA
Sbjct: 517 AAAGVKAL-PLQ---AAGCTGRPLGYYADPSG---WGA 547


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,291,958
Number of Sequences: 37866
Number of extensions: 126796
Number of successful extensions: 240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 7
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.