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Search of human proteins with 239749695
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
(594 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 1222 0.0
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 1222 0.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 66 8e-11
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 63 7e-10
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 60 6e-09
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 56 1e-07
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 55 1e-07
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 55 1e-07
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 55 1e-07
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 54 3e-07
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 54 3e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 54 3e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 54 3e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 54 3e-07
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 54 4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 5e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 5e-07
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 54 5e-07
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 53 9e-07
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 53 9e-07
gi|91208420 bassoon protein [Homo sapiens] 52 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 2e-06
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 52 2e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 50 4e-06
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|71043876 undifferentiated embryonic cell transcription factor... 50 4e-06
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 50 6e-06
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 50 6e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 50 8e-06
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 1222 bits (3161), Expect = 0.0
Identities = 594/594 (100%), Positives = 594/594 (100%)
Query: 1 MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG 60
MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG
Sbjct: 1 MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG 60
Query: 61 HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA 120
HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA
Sbjct: 61 HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA 120
Query: 121 LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE 180
LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE
Sbjct: 121 LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE 180
Query: 181 GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA 240
GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA
Sbjct: 181 GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA 240
Query: 241 LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL 300
LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL
Sbjct: 241 LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL 300
Query: 301 AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA 360
AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA
Sbjct: 301 AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA 360
Query: 361 GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP 420
GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP
Sbjct: 361 GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP 420
Query: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE
Sbjct: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
Query: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR 540
RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR
Sbjct: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR 540
Query: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP
Sbjct: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 1222 bits (3161), Expect = 0.0
Identities = 594/594 (100%), Positives = 594/594 (100%)
Query: 1 MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG 60
MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG
Sbjct: 1 MGRIPRRPQPAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRG 60
Query: 61 HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA 120
HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA
Sbjct: 61 HRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGA 120
Query: 121 LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE 180
LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE
Sbjct: 121 LGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAE 180
Query: 181 GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA 240
GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA
Sbjct: 181 GQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEAQQA 240
Query: 241 LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL 300
LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL
Sbjct: 241 LLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRL 300
Query: 301 AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA 360
AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA
Sbjct: 301 AGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQA 360
Query: 361 GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP 420
GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP
Sbjct: 361 GARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP 420
Query: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE
Sbjct: 421 WDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPE 480
Query: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR 540
RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR
Sbjct: 481 RWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPR 540
Query: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP
Sbjct: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 66.2 bits (160), Expect = 8e-11
Identities = 94/332 (28%), Positives = 111/332 (33%), Gaps = 47/332 (14%)
Query: 279 LAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLH 338
L G + AA+AA H LA + P + A A P G GAG
Sbjct: 25 LVGSLESQLAASAAHHH---HLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAG------- 74
Query: 339 DESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRR 398
P + AEG + G AR +R G A
Sbjct: 75 --------PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP---- 122
Query: 399 EGWGARAKLGGRGVCGKCGPGPWDDP-ARRRNPGAAARAKLAGQRAGRARARTGSQVGSR 457
A+ + G G C P P A P A AK AG A ARA G G
Sbjct: 123 ---AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP- 178
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERW---GGEAAAPRPSRV------LLPELPAVDPARDT 508
G G GPG G+ G N AAAP S V LLP P
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVI 238
Query: 509 RREPDAAAQRTELGGR----VGKGPGAPPSALPGPRPRPDSLS--PGEPPGPPT-----P 557
+ P A P AP +A P P P P +L+ PG P GPPT P
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298
Query: 558 PPARALPAAVASARCSLRDPGGGSARIRSRPG 589
PPA A A A + GG A + +PG
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
Score = 40.0 bits (92), Expect = 0.006
Identities = 85/321 (26%), Positives = 102/321 (31%), Gaps = 63/321 (19%)
Query: 286 PSAAAAAGRHCPLRLA-GQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRP 344
P+ AA AG P A G AP PA A P GG G + P P
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARP----------GGGGP---------QRPGP 107
Query: 345 NFPQSLAEGLGVSPQAGAR----VGEAREAVTTHERAHLDREGEARARLGQAAAQMRREG 400
P+ G +P A G A A + G A G A + G
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV-AAGPEPAPAGPA----KPAG 162
Query: 401 WGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAA--RAKLAGQRAGRARARTGSQVGSRG 458
A A G G GPGP P + PGAA A + A A S V +
Sbjct: 163 PAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGP 222
Query: 459 RGWGP-----------------GAGRVPSGGRRGVGNPERWGGEAAAPRP------SRVL 495
P GA P+ AAAP P +
Sbjct: 223 AALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR 282
Query: 496 LPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGP-----RPRPDSLSPGE 550
P PA P P AAAQ GG G P AP A GP +P P + +
Sbjct: 283 PPGHPAGPPTAAPAVPPPAAAQN---GGSAGAAP-APAPAAGGPAGVSGQPGPGAAAAAP 338
Query: 551 PPGPPTPPPARALPAAVASAR 571
PG P R + AA +A+
Sbjct: 339 APGVKAESPKRVVQAAPPAAQ 359
Score = 35.0 bits (79), Expect = 0.19
Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 523 GRVGKGPGAPPSALPGPRPRPDSLSPGEP-------PGPPTP-----------PPARALP 564
G G GP AP PG P P P PGPP+P P A+ P
Sbjct: 69 GAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRP 128
Query: 565 AAVASARCSLRDPGGGSARIRSRPGRSG 592
SA P + P +G
Sbjct: 129 PPEGSAGSCAPVPAAAAVAAGPEPAPAG 156
Score = 34.3 bits (77), Expect = 0.33
Identities = 42/159 (26%), Positives = 55/159 (34%), Gaps = 20/159 (12%)
Query: 430 PGAAARAKLAGQRAGRARARTGSQVGSRGRGWGP-GAGRVPS---GGRRGVGNPERWGGE 485
P A A+ G AG A + + G GA P+ GG GV G
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA 334
Query: 486 AAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG----------GRVGKGPGAPPSA 535
AAAP P + A P R + P AA G G +G P+A
Sbjct: 335 AAAPAPG------VKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388
Query: 536 LPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSL 574
+P P P + P G T +R A + R +L
Sbjct: 389 VPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATL 427
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 63.2 bits (152), Expect = 7e-10
Identities = 73/233 (31%), Positives = 91/233 (39%), Gaps = 37/233 (15%)
Query: 386 RARLGQAAAQMRREGWGARAKLGGRGVCGKCG----------PGPWDDPARRRNPGAAAR 435
+ + GQA + G + KLG G+ G G PGP + G +
Sbjct: 766 KGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQ 825
Query: 436 AKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWG--GEAAAPR--- 490
L G+R GSRG PGA P G + VG G GE P
Sbjct: 826 PGLEGERG---------PPGSRGERGQPGATGQP-GPKGDVGQDGAPGIPGEKGLPGLQG 875
Query: 491 PSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSP-G 549
P P+ P +D R P QR ELG + GP P L GP+ + + P G
Sbjct: 876 PPGFPGPKGPPGHQGKDGR--PGHPGQRGELGFQGQTGPPGPAGVL-GPQGKTGEVGPLG 932
Query: 550 E--PPGPPTPPPARALPAAVA--SARCSLRDPG----GGSARIRSRPGRSGGP 594
E PPGPP PP + LP A+ L PG G A +R PG GGP
Sbjct: 933 ERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGP 985
Score = 39.7 bits (91), Expect = 0.008
Identities = 78/334 (23%), Positives = 101/334 (30%), Gaps = 56/334 (16%)
Query: 300 LAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQ 359
L GQ+ P PA + + ER P G G D P P P G S +
Sbjct: 1023 LPGQSGSEGPVGPAGKKGSRGERGPPGPTGK--------DGIPGPLGPLGPPGAAGPSGE 1074
Query: 360 AGAR--VGEAREAVTTHERAHLDREGEARAR--------LGQAAAQMRREG---WGARAK 406
G + VG + ++ G+ R G AQ RR +G +
Sbjct: 1075 EGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGD 1134
Query: 407 LGGRGVCGKCGP----------------------GPWDDPARRRNPGAAARAKLAGQRAG 444
G RG G GP GP P R G G G
Sbjct: 1135 DGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGG 1194
Query: 445 RARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDP 504
+ + G RG PG P G+ P+ GE PS P P
Sbjct: 1195 VGQPGAVGEKGERGDAGDPGPPGAP-----GIPGPKGDIGEKGDSGPSGAAGPPGKKGPP 1249
Query: 505 ARDTRREPDAAAQRTELGGRVGKGPGAPP----SALPGPRPRPDSLSPGEPPGPPTPPPA 560
D + + T L G +G PG P PG + P + PPG P A
Sbjct: 1250 GEDGAK---GSVGPTGLPGDLGP-PGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGA 1305
Query: 561 RALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P + R+ G + PG G P
Sbjct: 1306 PGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPP 1339
Score = 37.0 bits (84), Expect = 0.051
Identities = 51/182 (28%), Positives = 62/182 (34%), Gaps = 20/182 (10%)
Query: 391 QAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARART 450
QA A +++ + G G+ G+ PGP P G G R +
Sbjct: 465 QAQAVLQQTQLSMKGPPGPVGLTGR--PGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGP 522
Query: 451 GSQVGSRGRGWGPGAGRVPSG----GRRGV-GNPERWGGEAAAPRPSRVLLPELPAVDPA 505
+VG GR GA +P G RG G P G + V P P D
Sbjct: 523 PGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGE 582
Query: 506 RDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSL----SPGE-----PPGPPT 556
R P Q E G R GP P GP RP +PG PPG P
Sbjct: 583 RGAEGPPGPTGQAGEPGPRGLLGPRGSP----GPTGRPGVTGIDGAPGAKGNVGPPGEPG 638
Query: 557 PP 558
PP
Sbjct: 639 PP 640
Score = 37.0 bits (84), Expect = 0.051
Identities = 62/227 (27%), Positives = 80/227 (35%), Gaps = 42/227 (18%)
Query: 388 RLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRAR 447
+ GQ + R G+R + G G G+ PGP D + PG L G +
Sbjct: 822 KTGQPGLEGERGPPGSRGERGQPGATGQ--PGPKGDVGQDGAPGIPGEKGLPGLQGPPGF 879
Query: 448 ARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPE--LPAVDPA 505
G +G+ PG G R +G + G+ P P+ VL P+ V P
Sbjct: 880 PGPKGPPGHQGKDGRPGH----PGQRGELG----FQGQTGPPGPAGVLGPQGKTGEVGPL 931
Query: 506 RDTRREPDAAAQRTELG-----GRVG-KGPGAPPSAL-----------PGPRPRPDSLSP 548
+ R P E G GR G KG PP L PGP+ P P
Sbjct: 932 GE-RGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGP 990
Query: 549 ---GEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSG 592
GPP P A P R P G + I PG+SG
Sbjct: 991 TGLKGDKGPPGPVGANGSPGE--------RGPLGPAGGI-GLPGQSG 1028
Score = 34.3 bits (77), Expect = 0.33
Identities = 54/196 (27%), Positives = 63/196 (32%), Gaps = 38/196 (19%)
Query: 400 GWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG 458
G G G +G G GP G P R G A L GQ + GSRG
Sbjct: 984 GPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRG 1043
Query: 459 RGWGPG-------------------AGRVPSGGRRG-VGNPERWG-----GEAAAPRPSR 493
PG AG G +G VG P G G+A P
Sbjct: 1044 ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG 1103
Query: 494 VL----LPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPP--SALPGPRPRP---- 543
+ P P D A+ R P Q+ + G R G PP LPGP
Sbjct: 1104 IRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVG 1163
Query: 544 --DSLSPGEPPGPPTP 557
S+ P PGP P
Sbjct: 1164 DVGSMGPHGAPGPRGP 1179
Score = 33.9 bits (76), Expect = 0.43
Identities = 51/207 (24%), Positives = 62/207 (29%), Gaps = 40/207 (19%)
Query: 378 HLDREGE-----ARARLGQAAAQMRREGWGARAKLGG------RGVCGKCG-PGPWDDPA 425
H+ REG A+ G R GAR G RG+ G G PG P
Sbjct: 1317 HMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPG 1376
Query: 426 RRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPG-AGRVPSGGRRGVGNPERWGG 484
+ PG + L G + +G G PG AG G GV P G
Sbjct: 1377 QMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKG 1436
Query: 485 EAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPD 544
+ P P L G G A P G + P
Sbjct: 1437 DPGPPGPIGSL---------------------------GHPGPPGVAGPLGQKGSKGSPG 1469
Query: 545 SLSPGEPPGPPTPPPARALPAAVASAR 571
S+ P GP PP PA + R
Sbjct: 1470 SMGPRGDTGPAGPPGPPGAPAELHGLR 1496
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 60.1 bits (144), Expect = 6e-09
Identities = 102/396 (25%), Positives = 126/396 (31%), Gaps = 86/396 (21%)
Query: 264 GGRAAAGL----GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQ- 318
G R AAG G G + G+ P + G+ P G++ R P P+ PR Q
Sbjct: 516 GPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
Query: 319 -----------------QTEREPWGGEGAGSRFKRLHDESPR----------------PN 345
ER GG G + + P+ P
Sbjct: 576 GVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 346 FPQSLA--EGLGVSPQAGARVGEAREAVTTHERAHLDREGEA-----RARLGQAAAQMRR 398
PQ L G G P + GE +G+A R G A A R
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695
Query: 399 EGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG 458
G G GG+G G GP PGAA L G R + G +G
Sbjct: 696 GGAGPPGPEGGKGAAGPPGP-----------PGAAGTPGLQGMPGERGGLGSPGPKGDKG 744
Query: 459 RGWGPGAGRVP-SGGRRGVGNPERWGGEAAAP-RPSRVLLPELPAVDPARDTRRE----- 511
GPGA VP G RG P G A P P LP + R + E
Sbjct: 745 EPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG 804
Query: 512 -------PDAAAQRTELGGR------VGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP 558
P A Q E GG+ KG G PP + GP P P PPGP
Sbjct: 805 PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPP-GVAGP---PGGSGPAGPPGPQGVK 860
Query: 559 PARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
R P +A G+ + PG +G P
Sbjct: 861 GERGSPGGPGAAGFP------GARGLPGPPGSNGNP 890
Score = 50.8 bits (120), Expect = 3e-06
Identities = 97/372 (26%), Positives = 120/372 (32%), Gaps = 55/372 (14%)
Query: 264 GGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQA-PRTQPACPAAPRMQQTER 322
GG+ AG +RG GL P AG P G A P P P +Q
Sbjct: 672 GGKGDAGAPGERGPP--GLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPG 729
Query: 323 EPWGGEGAGSRFKRLH------DESPRPNFPQSLAEGLGVSPQAG-----------ARVG 365
E G G + + D P + P+ +G AG G
Sbjct: 730 ERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPG 789
Query: 366 EAREAVTTHERAHLDREGEAR-----ARLGQAAAQMRREGWGARAKLGGRGVCGKCG--- 417
A + ER G A + G+ + R G + + G GV G G
Sbjct: 790 IAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSG 849
Query: 418 ----PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGR 473
PGP R +PG A G AR G GS G PG PSG
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPG-----ARGLPGPP-GSNGNPGPPG----PSGSP 899
Query: 474 RGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTR---REPDAAAQRTELGGRVGKGPG 530
G P G AP V P+ A P + P A + G G
Sbjct: 900 -GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGL 958
Query: 531 APPSALPGPRPRP-------DSLSPGEP--PGPPTPPPARALPAAVASARCSLRDPGGGS 581
A P +PGPR P +S PG G PP + LP +A RD GS
Sbjct: 959 AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGS 1018
Query: 582 ARIRSRPGRSGG 593
+ R G GG
Sbjct: 1019 DGLPGRDGSPGG 1030
Score = 50.4 bits (119), Expect = 4e-06
Identities = 97/356 (27%), Positives = 110/356 (30%), Gaps = 55/356 (15%)
Query: 264 GGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTERE 323
G A GL + G LP A G P G+ R +P P A +
Sbjct: 276 GETGAPGLKGENG--------LPGENGAPGPMGPRGAPGE--RGRPGLPGAAGAR----- 320
Query: 324 PWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREG 383
G +GA R D P P P A G SP A VG A + G
Sbjct: 321 --GNDGA-----RGSDGQPGPPGPPGTA-GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPG 372
Query: 384 EARARLGQAAAQMRREGWGARAKLGGRGVCGKCG-PGPWDDPARRRNPGAAARAKLAGQR 442
G A AQ G GG+G G G PG R PG A G R
Sbjct: 373 PQ----GHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLR 428
Query: 443 AGR-------ARARTGSQVGSRGRGWGPGA-------GRVPSGGRRGVGNPERWGGEAAA 488
G A+ G + G RG PG G+ S G G GE A
Sbjct: 429 GGAGEPGKNGAKGEPGPR-GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 489 PRPSRVLLPE-LPAVDPARDTRREPDAAAQRTELG--GRVGKGPGAPPSALPGPRPRPDS 545
P P +P R P A R G GR G G +PG P S
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547
Query: 546 LS-PGEP--------PGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSG 592
PG P PGPP P R P + D G R PG G
Sbjct: 548 DGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG 603
Score = 43.9 bits (102), Expect = 4e-04
Identities = 48/165 (29%), Positives = 57/165 (34%), Gaps = 13/165 (7%)
Query: 408 GGRGVCGKCG-PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAG 466
GG+G G+ G PG P PG A +G R A G G PG
Sbjct: 1029 GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP- 1087
Query: 467 RVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG---- 522
+ P G + G G + P P P + P A R +G
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 523 -GRVGKGPGAPPSALPGPR----PRPDSLSPGEP--PGPPTPPPA 560
G+ G P PGPR R SPG P PGPP PP A
Sbjct: 1148 PGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGA 1192
Score = 40.8 bits (94), Expect = 0.004
Identities = 48/158 (30%), Positives = 53/158 (33%), Gaps = 17/158 (10%)
Query: 402 GARAKLGGRGVCGKCG-PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
G R G RG G G PG R PG A AG+ GR G G RG
Sbjct: 483 GERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE-PGRDGVPGGP--GMRGMP 539
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPE-LPAVDPARDTRREPDAAAQRT 519
PG G G P GE+ P P P P V + A +
Sbjct: 540 GSPGGP-----GSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNG 594
Query: 520 ELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTP 557
E GG G GP PP + P PPGP P
Sbjct: 595 ERGGPGGPGPQGPPG-------KNGETGPQGPPGPTGP 625
Score = 38.9 bits (89), Expect = 0.013
Identities = 88/352 (25%), Positives = 111/352 (31%), Gaps = 52/352 (14%)
Query: 264 GGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTERE 323
GG AAG RG LP + G P +G + P PA
Sbjct: 867 GGPGAAGFPGARG--------LPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG 918
Query: 324 PWGGEG-AGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDRE 382
G +G AG ++ SP P LG++ GAR G A R +
Sbjct: 919 VSGPKGDAGQPGEK---GSPGAQGPPGAPGPLGIAGITGAR-GLAGPPGMPGPRGSPGPQ 974
Query: 383 GEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQR 442
G + G+ A G R G +G+ G G +P R NPG+ G
Sbjct: 975 G-VKGESGKPGANGLS---GERGPPGPQGLPGLAGTA--GEPGRDGNPGSDGLPGRDGSP 1028
Query: 443 AGRARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSR---VLLPE 498
G+ G+ G PG G V G+ G G A AP P+ P+
Sbjct: 1029 GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQ 1088
Query: 499 LPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSA-------LPGPRPRPDSLSPGEP 551
P D R G G PG+P A PGP + P P
Sbjct: 1089 GPRGDKGETGERGAAGIKGHRGFPGNPG-APGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 552 PG---------PPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
PG P PP P R S PG PG+ G P
Sbjct: 1148 PGKDGTSGHPGPIGPPG----PRGNRGERGSEGSPG--------HPGQPGPP 1187
Score = 33.5 bits (75), Expect = 0.57
Identities = 50/207 (24%), Positives = 60/207 (28%), Gaps = 24/207 (11%)
Query: 408 GGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG-RGWGPGAG 466
G G G GP D + R PG L G + A G +G RG+ G
Sbjct: 216 GPPGAIGPSGPAGKDGESGR--PGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNG 273
Query: 467 RVPSGGRRGVGNPERWGGEAAAP-------RPSRVLLPELPAV------DPARDTRREPD 513
G G+ GE AP P P LP D AR + +P
Sbjct: 274 EKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 514 AAAQRTELG--------GRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPA 565
G G VG + PG R P GPP PP P
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
Query: 566 AVASARCSLRDPGGGSARIRSRPGRSG 592
+ G R PG +G
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAG 420
Score = 29.6 bits (65), Expect = 8.2
Identities = 47/169 (27%), Positives = 56/169 (33%), Gaps = 37/169 (21%)
Query: 446 ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA 505
A R + G +G PG +P GR G G +P P P + P
Sbjct: 94 APTRPPNGQGPQGPKGDPGPPGIP--GRNGDPGIPGQPGSPGSPGP-----PGICESCPT 146
Query: 506 RDTRREPDAAAQRTELGGRVGKGPGAP-PSALPGPRPRPDSLS--------------PGE 550
P + + G VG G P P+ PGP P P S PGE
Sbjct: 147 GPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP-PGPPGTSGHPGSPGSPGYQGPPGE 205
Query: 551 P-----PGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P GPP PP A P+ A PG RPG G P
Sbjct: 206 PGQAGPSGPPGPPGAIG-PSGPAGKDGESGRPG--------RPGERGLP 245
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 55.8 bits (133), Expect = 1e-07
Identities = 58/195 (29%), Positives = 72/195 (36%), Gaps = 35/195 (17%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
GA + GGRG GK GP +R P G R R + G +G
Sbjct: 892 GANGEKGGRGTPGKPGP------RGQRGP--------TGPRGERGPRGITGKPGPKGNSG 937
Query: 462 GPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTEL 521
G G P G RG P+ G P P P P +D P QR E
Sbjct: 938 GDGPAGPP--GERGPNGPQ---GPTGFPGPKG------PPGPPGKDGL--PGHPGQRGET 984
Query: 522 GGRVGKGPGAPPSALPGPRPRPDSLSPGE--PPGPPTPPPARALPAAVASARCSLRDPGG 579
G + GP PP + P ++ GE PGPP PP + LP +A + DPG
Sbjct: 985 GFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP-GLAGKEGTKGDPGP 1043
Query: 580 GSARIRSRPGRSGGP 594
PG+ G P
Sbjct: 1044 AGL-----PGKDGPP 1053
Score = 47.4 bits (111), Expect = 4e-05
Identities = 55/203 (27%), Positives = 67/203 (33%), Gaps = 12/203 (5%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G + G G G+ PGP P +R PG A G++ + A G G
Sbjct: 1369 GEPGQTGSPGPTGE--PGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIG 1426
Query: 462 GPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
GA G+ G RG+ P G +P P P P P P
Sbjct: 1427 PQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPG 1486
Query: 521 LGGRVG-------KGP-GAP-PSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASAR 571
L G +G KG G P P GP+ P P GPP PP P +
Sbjct: 1487 LIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKG 1546
Query: 572 CSLRDPGGGSARIRSRPGRSGGP 594
S G A PG G P
Sbjct: 1547 SSGPTGPKGEAGHPGPPGPPGPP 1569
Score = 43.9 bits (102), Expect = 4e-04
Identities = 53/177 (29%), Positives = 65/177 (36%), Gaps = 26/177 (14%)
Query: 387 ARLGQAAAQMRREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGR 445
A+ QA A +++ R G G+ G+ GP GP + PG G R +
Sbjct: 541 AQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQ---GPRGVQ 597
Query: 446 ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLL---PELPAV 502
+ G RGR GA +P G+ G + G A P P P
Sbjct: 598 GPPGPAGKPGRRGRAGSDGARGMP--GQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPG 655
Query: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPG-PRPRPDSLSPGEPPGPPTPP 558
P D R D G VG P LPG P PR L P PPGPP PP
Sbjct: 656 PPGDDGERGDD---------GEVG------PRGLPGEPGPR-GLLGPKGPPGPPGPP 696
Score = 43.9 bits (102), Expect = 4e-04
Identities = 74/316 (23%), Positives = 103/316 (32%), Gaps = 34/316 (10%)
Query: 286 PSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPN 345
P AG P+ + G+ P PA + E+ P G G + P
Sbjct: 1089 PGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGP 1148
Query: 346 FPQSLAEG----LGVSPQAGAR--VGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
+G +G Q G++ GE T + + + G + A G+ + ++
Sbjct: 1149 VGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGAD-GEPGPRGQQG 1207
Query: 400 GWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR 459
+G + G RG G PGP PG GQ G RG
Sbjct: 1208 LFGQKGDEGPRGFPGP--PGPVGLQGLPGPPGEKGETGDVGQMG------PPGPPGPRGP 1259
Query: 460 GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRT 519
PGA P G G+GNP G P P LP + E +
Sbjct: 1260 SGAPGADG-PQGPPGGIGNP---GAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG 1315
Query: 520 ELGGRVGKGPGAPPSALPGPRPRPDSLS-PGEPPGPPTPPPARALPAAVASARCSLRDPG 578
G GP PP GP+ P + PG+P P P PA +D
Sbjct: 1316 PSGAAGPPGPKGPPGD-DGPKGSPGPVGFPGDPGPPGEPGPAG-------------QDGP 1361
Query: 579 GGSARIRSRPGRSGGP 594
G PG++G P
Sbjct: 1362 PGDKGDDGEPGQTGSP 1377
Score = 43.1 bits (100), Expect = 7e-04
Identities = 60/218 (27%), Positives = 78/218 (35%), Gaps = 33/218 (15%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARA-RTGSQ--VGSR 457
G G RG G GP G P + PG A G++ + A R G Q VG
Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLP 1143
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERWG-----GEAAAPRPSRVLLPELPAVDPARD-TRRE 511
G GP G + +G P + G GE P P+ P+ P P E
Sbjct: 1144 GPA-GPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTG---PQGPIGQPGPSGADGE 1199
Query: 512 PDAAAQRTELGGRVGKGPGAPPS--------ALPGP---RPRPDSLSPGEPPGPPTPPPA 560
P Q+ G + +GP P LPGP + + PPGPP P
Sbjct: 1200 PGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG- 1258
Query: 561 RALPAAVASARCSLRDPGG----GSARIRSRPGRSGGP 594
P+ A PGG G+ + PG +G P
Sbjct: 1259 ---PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEP 1293
Score = 35.8 bits (81), Expect = 0.11
Identities = 60/255 (23%), Positives = 79/255 (30%), Gaps = 56/255 (21%)
Query: 341 SPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREG 400
+P + PQ G+G +P A GE EA L EG G+
Sbjct: 1262 APGADGPQGPPGGIG-NPGAVGEKGEPGEA----GEPGLPGEGGPPGPKGER-------- 1308
Query: 401 WGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR 459
G + + G G G GP GP D + +PG G A G +G
Sbjct: 1309 -GEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGD 1367
Query: 460 GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRT 519
PG + S G G P G+ P P+ PE
Sbjct: 1368 DGEPG--QTGSPGPTGEPGPSGPPGKRGPPGPAG---PE--------------------- 1401
Query: 520 ELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGG 579
GR G+ + L GP + + P PG P P R +P V
Sbjct: 1402 ---GRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPV------------ 1446
Query: 580 GSARIRSRPGRSGGP 594
G + PG G P
Sbjct: 1447 GEQGLPGSPGPDGPP 1461
Score = 30.8 bits (68), Expect = 3.7
Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 523 GRVGKGPGAP--PSALPGPR----PRPDSLSPGE--PPGPPTPPPARALPAAVAS-ARCS 573
G + +GP P P+ LPGP P PGE PPG P P A LP +
Sbjct: 464 GMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLP 523
Query: 574 LRDPGGGSA 582
R GGG A
Sbjct: 524 FRFGGGGDA 532
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 55.5 bits (132), Expect = 1e-07
Identities = 65/203 (32%), Positives = 77/203 (37%), Gaps = 39/203 (19%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR-ARARTGSQVGSRGRG 460
GA + G RGV GK GP +R P G R R AR TG G +G
Sbjct: 874 GANGEKGARGVAGKPGP------RGQRGP--------TGPRGSRGARGPTGKP-GPKGTS 918
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
G G P G RG P+ G P P P P +D P QR E
Sbjct: 919 GGDGPPGPP--GERGPQGPQ---GPVGFPGPKG------PPGPPGKDGL--PGHPGQRGE 965
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEP--PGPPTPPPARALPAAVASARCSLRDPG 578
G + GP P + P ++ GE PGPP PP + LP A A + DPG
Sbjct: 966 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPG 1024
Query: 579 -------GGSARIRSRPGRSGGP 594
G A +R PG G P
Sbjct: 1025 PQGISGKDGPAGLRGFPGERGLP 1047
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 27/209 (12%)
Query: 408 GGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARA-RTGSQ--VGSRGRGWGP 463
G RG G GP G P + PG A G++ + A R G Q VG G GP
Sbjct: 1072 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-GP 1130
Query: 464 GAGRVPSGGRRGVGNPERWG-----GEAAAPRP----SRVLLPELPAVDPARDTRREPDA 514
G + +G P + G GE P P V P + D R +
Sbjct: 1131 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1190
Query: 515 AAQRTELGGRVGKGPGAPPS--ALPGP---RPRPDSLSPGEPPGPPTPPPARALPAAVAS 569
Q+ + G R GP P LPGP + + P PPGPP P P
Sbjct: 1191 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG----PQGPNG 1246
Query: 570 ARCSLRDPGG----GSARIRSRPGRSGGP 594
A PG G + PG +G P
Sbjct: 1247 ADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1275
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 72/211 (34%), Gaps = 31/211 (14%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARAR 449
G A A+ R+ GA+ + G G GK GP PA + PG + G +
Sbjct: 1378 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK--PGPEGLRGIPGPVGEQGLPG 1435
Query: 450 TGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTR 509
Q G G PG + G+P G + P + L P + R
Sbjct: 1436 AAGQDGPPGPMGPPGLPGLK-------GDP---GSKGEKGHPGLIGLIGPPGEQGEKGDR 1485
Query: 510 REPDAAAQRTELGGRVGKGPGAP-----PSALPGPR-------------PRPDSLSPGEP 551
P G GP P P LPGP+ + DS PG P
Sbjct: 1486 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG-P 1544
Query: 552 PGPPTPPPARALPAAVASARCSLRDPGGGSA 582
PG P PP P + S++ + R G A
Sbjct: 1545 PGSPGPPGEVIQPLPILSSKKTRRHTEGMQA 1575
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/202 (25%), Positives = 63/202 (31%), Gaps = 44/202 (21%)
Query: 402 GARAKLGGRGVCGKCGP----------GPWDDPARRRNPGAAARAKLAGQRAGRARARTG 451
G R G G G GP G +P NPG A + G + R
Sbjct: 1237 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK--- 1293
Query: 452 SQVGSRGRGWGPGAGRVPSG-GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRR 510
+ G G PGA P G +G P + G+ P
Sbjct: 1294 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG-------------------- 1333
Query: 511 EPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASA 570
EP A Q +GG KG P PGP P GPP PP R P A +
Sbjct: 1334 EPGPAGQ-DGVGG--DKGEDGDPGQ-PGPP------GPSGEAGPPGPPGKRGPPGAAGAE 1383
Query: 571 RCSLRDPGGGSARIRSRPGRSG 592
G A PG++G
Sbjct: 1384 GRQGEKGAKGEAGAEGPPGKTG 1405
Score = 38.1 bits (87), Expect = 0.023
Identities = 55/228 (24%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 387 ARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRA 446
A+ QA A +++ R G G+ G+ PGP P G + G R +
Sbjct: 523 AQEAQAQAILQQARIALRGPPGPMGLTGR--PGPVGGPGSSGAKGESGDPGPQGPRGVQG 580
Query: 447 RARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP-----RPSRVLLPELPA 501
+ G RGR G +P G G + G P R R P+ P
Sbjct: 581 PPGPTGKPGKRGRPGADGGRGMP--GEPGAKGDRGFDGLPGLPGDKGHRGERG--PQGPP 636
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP------- 554
P D R D L G G P PG +P PPGP
Sbjct: 637 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 696
Query: 555 --PTPPPARALPA--AVASARCSLRDPG----GGSARIRSRPGRSGGP 594
P PP + P + + + PG G + PG G P
Sbjct: 697 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 744
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 55.5 bits (132), Expect = 1e-07
Identities = 65/203 (32%), Positives = 77/203 (37%), Gaps = 39/203 (19%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR-ARARTGSQVGSRGRG 460
GA + G RGV GK GP +R P G R R AR TG G +G
Sbjct: 823 GANGEKGARGVAGKPGP------RGQRGP--------TGPRGSRGARGPTGKP-GPKGTS 867
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
G G P G RG P+ G P P P P +D P QR E
Sbjct: 868 GGDGPPGPP--GERGPQGPQ---GPVGFPGPKG------PPGPPGKDGL--PGHPGQRGE 914
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEP--PGPPTPPPARALPAAVASARCSLRDPG 578
G + GP P + P ++ GE PGPP PP + LP A A + DPG
Sbjct: 915 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPG 973
Query: 579 -------GGSARIRSRPGRSGGP 594
G A +R PG G P
Sbjct: 974 PQGISGKDGPAGLRGFPGERGLP 996
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 27/209 (12%)
Query: 408 GGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARA-RTGSQ--VGSRGRGWGP 463
G RG G GP G P + PG A G++ + A R G Q VG G GP
Sbjct: 1021 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-GP 1079
Query: 464 GAGRVPSGGRRGVGNPERWG-----GEAAAPRP----SRVLLPELPAVDPARDTRREPDA 514
G + +G P + G GE P P V P + D R +
Sbjct: 1080 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1139
Query: 515 AAQRTELGGRVGKGPGAPPS--ALPGP---RPRPDSLSPGEPPGPPTPPPARALPAAVAS 569
Q+ + G R GP P LPGP + + P PPGPP P P
Sbjct: 1140 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG----PQGPNG 1195
Query: 570 ARCSLRDPGG----GSARIRSRPGRSGGP 594
A PG G + PG +G P
Sbjct: 1196 ADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1224
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 72/211 (34%), Gaps = 31/211 (14%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARAR 449
G A A+ R+ GA+ + G G GK GP PA + PG + G +
Sbjct: 1327 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK--PGPEGLRGIPGPVGEQGLPG 1384
Query: 450 TGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTR 509
Q G G PG + G+P G + P + L P + R
Sbjct: 1385 AAGQDGPPGPMGPPGLPGLK-------GDP---GSKGEKGHPGLIGLIGPPGEQGEKGDR 1434
Query: 510 REPDAAAQRTELGGRVGKGPGAP-----PSALPGPR-------------PRPDSLSPGEP 551
P G GP P P LPGP+ + DS PG P
Sbjct: 1435 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG-P 1493
Query: 552 PGPPTPPPARALPAAVASARCSLRDPGGGSA 582
PG P PP P + S++ + R G A
Sbjct: 1494 PGSPGPPGEVIQPLPILSSKKTRRHTEGMQA 1524
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/202 (25%), Positives = 63/202 (31%), Gaps = 44/202 (21%)
Query: 402 GARAKLGGRGVCGKCGP----------GPWDDPARRRNPGAAARAKLAGQRAGRARARTG 451
G R G G G GP G +P NPG A + G + R
Sbjct: 1186 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK--- 1242
Query: 452 SQVGSRGRGWGPGAGRVPSG-GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRR 510
+ G G PGA P G +G P + G+ P
Sbjct: 1243 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG-------------------- 1282
Query: 511 EPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASA 570
EP A Q +GG KG P PGP P GPP PP R P A +
Sbjct: 1283 EPGPAGQ-DGVGG--DKGEDGDPGQ-PGPP------GPSGEAGPPGPPGKRGPPGAAGAE 1332
Query: 571 RCSLRDPGGGSARIRSRPGRSG 592
G A PG++G
Sbjct: 1333 GRQGEKGAKGEAGAEGPPGKTG 1354
Score = 38.1 bits (87), Expect = 0.023
Identities = 55/228 (24%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 387 ARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRA 446
A+ QA A +++ R G G+ G+ PGP P G + G R +
Sbjct: 472 AQEAQAQAILQQARIALRGPPGPMGLTGR--PGPVGGPGSSGAKGESGDPGPQGPRGVQG 529
Query: 447 RARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP-----RPSRVLLPELPA 501
+ G RGR G +P G G + G P R R P+ P
Sbjct: 530 PPGPTGKPGKRGRPGADGGRGMP--GEPGAKGDRGFDGLPGLPGDKGHRGERG--PQGPP 585
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP------- 554
P D R D L G G P PG +P PPGP
Sbjct: 586 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 645
Query: 555 --PTPPPARALPA--AVASARCSLRDPG----GGSARIRSRPGRSGGP 594
P PP + P + + + PG G + PG G P
Sbjct: 646 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 693
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 55.5 bits (132), Expect = 1e-07
Identities = 65/203 (32%), Positives = 77/203 (37%), Gaps = 39/203 (19%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR-ARARTGSQVGSRGRG 460
GA + G RGV GK GP +R P G R R AR TG G +G
Sbjct: 862 GANGEKGARGVAGKPGP------RGQRGP--------TGPRGSRGARGPTGKP-GPKGTS 906
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
G G P G RG P+ G P P P P +D P QR E
Sbjct: 907 GGDGPPGPP--GERGPQGPQ---GPVGFPGPKG------PPGPPGKDGL--PGHPGQRGE 953
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEP--PGPPTPPPARALPAAVASARCSLRDPG 578
G + GP P + P ++ GE PGPP PP + LP A A + DPG
Sbjct: 954 TGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA-AGKEGAKGDPG 1012
Query: 579 -------GGSARIRSRPGRSGGP 594
G A +R PG G P
Sbjct: 1013 PQGISGKDGPAGLRGFPGERGLP 1035
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 27/209 (12%)
Query: 408 GGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARA-RTGSQ--VGSRGRGWGP 463
G RG G GP G P + PG A G++ + A R G Q VG G GP
Sbjct: 1060 GERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-GP 1118
Query: 464 GAGRVPSGGRRGVGNPERWG-----GEAAAPRP----SRVLLPELPAVDPARDTRREPDA 514
G + +G P + G GE P P V P + D R +
Sbjct: 1119 AGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGM 1178
Query: 515 AAQRTELGGRVGKGPGAPPS--ALPGP---RPRPDSLSPGEPPGPPTPPPARALPAAVAS 569
Q+ + G R GP P LPGP + + P PPGPP P P
Sbjct: 1179 FGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRG----PQGPNG 1234
Query: 570 ARCSLRDPGG----GSARIRSRPGRSGGP 594
A PG G + PG +G P
Sbjct: 1235 ADGPQGPPGSVGSVGGVGEKGEPGEAGNP 1263
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 72/211 (34%), Gaps = 31/211 (14%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARAR 449
G A A+ R+ GA+ + G G GK GP PA + PG + G +
Sbjct: 1366 GAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK--PGPEGLRGIPGPVGEQGLPG 1423
Query: 450 TGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTR 509
Q G G PG + G+P G + P + L P + R
Sbjct: 1424 AAGQDGPPGPMGPPGLPGLK-------GDP---GSKGEKGHPGLIGLIGPPGEQGEKGDR 1473
Query: 510 REPDAAAQRTELGGRVGKGPGAP-----PSALPGPR-------------PRPDSLSPGEP 551
P G GP P P LPGP+ + DS PG P
Sbjct: 1474 GLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPG-P 1532
Query: 552 PGPPTPPPARALPAAVASARCSLRDPGGGSA 582
PG P PP P + S++ + R G A
Sbjct: 1533 PGSPGPPGEVIQPLPILSSKKTRRHTEGMQA 1563
Score = 40.8 bits (94), Expect = 0.004
Identities = 52/202 (25%), Positives = 63/202 (31%), Gaps = 44/202 (21%)
Query: 402 GARAKLGGRGVCGKCGP----------GPWDDPARRRNPGAAARAKLAGQRAGRARARTG 451
G R G G G GP G +P NPG A + G + R
Sbjct: 1225 GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEK--- 1281
Query: 452 SQVGSRGRGWGPGAGRVPSG-GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRR 510
+ G G PGA P G +G P + G+ P
Sbjct: 1282 GEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPG-------------------- 1321
Query: 511 EPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASA 570
EP A Q +GG KG P PGP P GPP PP R P A +
Sbjct: 1322 EPGPAGQ-DGVGG--DKGEDGDPGQ-PGPP------GPSGEAGPPGPPGKRGPPGAAGAE 1371
Query: 571 RCSLRDPGGGSARIRSRPGRSG 592
G A PG++G
Sbjct: 1372 GRQGEKGAKGEAGAEGPPGKTG 1393
Score = 38.1 bits (87), Expect = 0.023
Identities = 55/228 (24%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 387 ARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRA 446
A+ QA A +++ R G G+ G+ PGP P G + G R +
Sbjct: 511 AQEAQAQAILQQARIALRGPPGPMGLTGR--PGPVGGPGSSGAKGESGDPGPQGPRGVQG 568
Query: 447 RARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP-----RPSRVLLPELPA 501
+ G RGR G +P G G + G P R R P+ P
Sbjct: 569 PPGPTGKPGKRGRPGADGGRGMP--GEPGAKGDRGFDGLPGLPGDKGHRGERG--PQGPP 624
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP------- 554
P D R D L G G P PG +P PPGP
Sbjct: 625 GPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQ 684
Query: 555 --PTPPPARALPA--AVASARCSLRDPG----GGSARIRSRPGRSGGP 594
P PP + P + + + PG G + PG G P
Sbjct: 685 GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 732
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 54.3 bits (129), Expect = 3e-07
Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)
Query: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312
R GR G G +R A L L P+A A G PL L GQ PA
Sbjct: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
Query: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370
+Q PW +PR + P LA GL ++P+ GA R G A
Sbjct: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
Query: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404
R G + A A + R G+ GA
Sbjct: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
Query: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463
A G RG CG G AR P A+ LA + RAG T RG
Sbjct: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
Query: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522
G R G P R W RP R LP + +R P A R
Sbjct: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
Query: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
G +GP A PP A P R + P P G P A SA
Sbjct: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
Query: 576 DPGGGSARIRSRPGRSGG 593
DPGGGS R R R R G
Sbjct: 465 DPGGGS-RARRRAARGRG 481
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 54.3 bits (129), Expect = 3e-07
Identities = 105/378 (27%), Positives = 122/378 (32%), Gaps = 84/378 (22%)
Query: 262 RHGGRAAAGLGSQRGAALAGLIYL---------PSAAAAAGRHCPLRLAGQAPRTQPACP 312
R GR G G +R A L L P+A A G PL L GQ PA
Sbjct: 142 RSCGREGQGRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLALRGQCG---PAAR 198
Query: 313 AAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQS-LAEGLGVSPQAGA-RVGEAREA 370
+Q PW +PR + P LA GL ++P+ GA R G A
Sbjct: 199 RGCAQEQLRNAPW---------------APRAHSPAGRLALGL-IAPRRGAGRAGAGAAA 242
Query: 371 VTTHERAHLDREGEAR------------------ARLGQAAAQMRREGW--------GAR 404
R G + A A + R G+ GA
Sbjct: 243 CGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALPRSGFSGRPRGRGGAA 302
Query: 405 AKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ-RAGRARARTGSQVGSRGRGWGP 463
A G RG CG G AR P A+ LA + RAG T RG
Sbjct: 303 AGRGSRGEHPACGVGL----ARGTAPQPASTWALAARPRAGGTW--TSRFEAQRGCAHQD 356
Query: 464 GAGRVPSGGRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG 522
G R G P R W RP R LP + +R P A R
Sbjct: 357 GQRRTRDGAGNHASEPARVWSPPPRRQRPRR-----LPRASLQEEPKRRPPCA--RPSGA 409
Query: 523 GRVGKGPGA-------PPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
G +GP A PP A P R + P P G P A SA
Sbjct: 410 GPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGPASSGWHA-----GSAAGRGW 464
Query: 576 DPGGGSARIRSRPGRSGG 593
DPGGGS R R R R G
Sbjct: 465 DPGGGS-RARRRAARGRG 481
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 54.3 bits (129), Expect = 3e-07
Identities = 66/215 (30%), Positives = 77/215 (35%), Gaps = 27/215 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRA-RARTGSQ--VGSR 457
G G RG G GP GP P + PGAA + G++ R G Q VG
Sbjct: 926 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 985
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERWG-----GEAAAPRPSRVLLPELPAVDP-ARDTRRE 511
G PG G + VG+P + G GE P P P P P A E
Sbjct: 986 GPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPG---PIGPVGQPGAAGADGE 1041
Query: 512 PDAAAQRTELGGRVGKGP---GAPPS-----ALPGPRPRPDSLSPGEPPGPPTPPPARAL 563
P A + G + +G PP LPGP P GPP PP R
Sbjct: 1042 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG- 1100
Query: 564 PAAVASARCSLRDPGG----GSARIRSRPGRSGGP 594
PA A PGG G + PG SG P
Sbjct: 1101 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1135
Score = 46.6 bits (109), Expect = 6e-05
Identities = 74/278 (26%), Positives = 96/278 (34%), Gaps = 43/278 (15%)
Query: 344 PNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEA--RARLGQAAAQMRREGW 401
P FP G S + GAR G + ++ ER G+ R G++ A+ G
Sbjct: 730 PGFP-------GASGEKGAR-GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 781
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G G RG+ G GP + P + PG + L G R +VG +G+
Sbjct: 782 GPHGPPGERGLPGPQGPNGFPGP--KGPPGPPGKDGLPGHPGQRG------EVGFQGKTG 833
Query: 462 GPG----------AGRVPSGGRRGVGNPERWGGEAAAPRPSRVL-------LPELPAVDP 504
PG AG G RG P GE P + P P D
Sbjct: 834 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 893
Query: 505 ARDTRREPDAAAQRTELGG---RVGKGPGAPP--SALPGPRPRPDSLSPGEPPGPPTP-- 557
R P GG + +GP PP + PG R S P PPG P P
Sbjct: 894 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 953
Query: 558 PPARALPAAVASARCSLRDPG-GGSARIRSRPGRSGGP 594
PP A V + + G G PG +G P
Sbjct: 954 PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 991
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/231 (25%), Positives = 75/231 (32%), Gaps = 18/231 (7%)
Query: 380 DREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLA 439
D+ A+ QA A +++ R G G G+ PGP P G +
Sbjct: 376 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR--PGPLGQPGSPGLKGESGDLGPQ 433
Query: 440 GQRAGRARARTGSQVGSRGRGWGPGAGRVPSG----GRRGV-GNPERWGGEAAAPRPSRV 494
G R + + G RGR GA +P G RG G P G +
Sbjct: 434 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 493
Query: 495 LLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPS--------ALPGPRPRPDSL 546
LP P D R E E G R GP PP + GP+ SL
Sbjct: 494 GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL 553
Query: 547 SPGEPPGPP---TPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PGPP P + LP + G + PG G P
Sbjct: 554 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 604
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/212 (27%), Positives = 75/212 (35%), Gaps = 31/212 (14%)
Query: 386 RARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR 445
R G ++ R+ G GA+ G G GK GP PA + PG L G +
Sbjct: 1234 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQ 1291
Query: 446 ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA 505
R Q G G PG G RG G + P + L P
Sbjct: 1292 GRPGATGQAGPPGPVGPPGL-----PGLRGDA-----GAKGEKGHPGLIGLIGPPGEQGE 1341
Query: 506 RDTRREP---DAAAQRTELG--GRVGK-GPGAPPSALP---GPRPRPDSLSPG------- 549
+ R P + Q+ E+G G G GPG PP LP GP+ + PG
Sbjct: 1342 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP-GLPGPAGPKGAKGATGPGGPKGEKG 1400
Query: 550 --EPPGPPTPPPARALPAAVASARCSLRDPGG 579
PPG P PP P + + + R G
Sbjct: 1401 VQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDG 1432
Score = 37.7 bits (86), Expect = 0.030
Identities = 47/186 (25%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR- 459
GA G G G GP G +P +PG + G R R Q G G
Sbjct: 1106 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1165
Query: 460 ------------------GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPA 501
G+ G GG RG + GE P P
Sbjct: 1166 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1225
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPAR 561
P +R P A G + GKG P A+ P + + P P G P P R
Sbjct: 1226 GPPGPLGKRGP--AGSPGSEGRQGGKGAKGDPGAIGAP-GKTGPVGPAGPAGKPGPDGLR 1282
Query: 562 ALPAAV 567
LP +V
Sbjct: 1283 GLPGSV 1288
Score = 31.6 bits (70), Expect = 2.2
Identities = 48/167 (28%), Positives = 56/167 (33%), Gaps = 36/167 (21%)
Query: 402 GARAKLGGRGVCGKCGP-------GPWDDPARRRNPGAAA-RAKLAGQRAGRARARTGSQ 453
G R ++G G G+ GP GP DP PG + KL R G +
Sbjct: 668 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGP---PGLMGEKGKLGVPGLPGYPGRQGPK 724
Query: 454 VGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD 513
GS G PGA G RG+ GE P R R
Sbjct: 725 -GSLGFPGFPGASG--EKGARGLSGKSGPRGERGPTGP--------------RGQRGPRG 767
Query: 514 AAAQRTELGGRVGKGPGAPPS--ALPGPRPRPDSLSPGEPPGPPTPP 558
A + G G GP PP LPGP+ P PGP PP
Sbjct: 768 ATGKSGAKGTSGGDGPHGPPGERGLPGPQ------GPNGFPGPKGPP 808
Score = 30.8 bits (68), Expect = 3.7
Identities = 56/197 (28%), Positives = 70/197 (35%), Gaps = 39/197 (19%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G +G G+ G PGP DP R PG RAG GS G
Sbjct: 319 GPAGLIGPPGIQGN--PGPVGDPGERGPPG----------RAGLP--------GSDGAPG 358
Query: 462 GPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTEL 521
PG + R G G ++ AA ++ +L + AR R P T
Sbjct: 359 PPGTS-LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ------ARLALRGPPGPMGYTGR 411
Query: 522 GGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPP--TPPPARA---LPAAVASARCSLRD 576
G +G+ PG+ PG + L P P GP T PP +A A AR D
Sbjct: 412 PGPLGQ-PGS-----PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGD 465
Query: 577 PG-GGSARIRSRPGRSG 592
PG G PG G
Sbjct: 466 PGVKGDRGFDGLPGLPG 482
Score = 30.4 bits (67), Expect = 4.8
Identities = 47/175 (26%), Positives = 60/175 (34%), Gaps = 13/175 (7%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCG----PGPWDDPARRRNPGAAARAKLAGQRAGR 445
G+A + R GAR G GV G G PG + R + GA G+ R
Sbjct: 446 GKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGER 505
Query: 446 ARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDP 504
++G RG G G + G G+ P G P L P+ P
Sbjct: 506 G---DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 562
Query: 505 ARD-TRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP 558
+ T + +G KGP P LPG P S P PG PP
Sbjct: 563 GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPG-LPG---MPGSDGPPGHPGKEGPP 613
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 54.3 bits (129), Expect = 3e-07
Identities = 66/215 (30%), Positives = 77/215 (35%), Gaps = 27/215 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRA-RARTGSQ--VGSR 457
G G RG G GP GP P + PGAA + G++ R G Q VG
Sbjct: 905 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 964
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERWG-----GEAAAPRPSRVLLPELPAVDP-ARDTRRE 511
G PG G + VG+P + G GE P P P P P A E
Sbjct: 965 GPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPG---PIGPVGQPGAAGADGE 1020
Query: 512 PDAAAQRTELGGRVGKGP---GAPPS-----ALPGPRPRPDSLSPGEPPGPPTPPPARAL 563
P A + G + +G PP LPGP P GPP PP R
Sbjct: 1021 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG- 1079
Query: 564 PAAVASARCSLRDPGG----GSARIRSRPGRSGGP 594
PA A PGG G + PG SG P
Sbjct: 1080 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1114
Score = 46.6 bits (109), Expect = 6e-05
Identities = 74/278 (26%), Positives = 96/278 (34%), Gaps = 43/278 (15%)
Query: 344 PNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEA--RARLGQAAAQMRREGW 401
P FP G S + GAR G + ++ ER G+ R G++ A+ G
Sbjct: 709 PGFP-------GASGEKGAR-GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 760
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G G RG+ G GP + P + PG + L G R +VG +G+
Sbjct: 761 GPHGPPGERGLPGPQGPNGFPGP--KGPPGPPGKDGLPGHPGQRG------EVGFQGKTG 812
Query: 462 GPG----------AGRVPSGGRRGVGNPERWGGEAAAPRPSRVL-------LPELPAVDP 504
PG AG G RG P GE P + P P D
Sbjct: 813 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 872
Query: 505 ARDTRREPDAAAQRTELGG---RVGKGPGAPP--SALPGPRPRPDSLSPGEPPGPPTP-- 557
R P GG + +GP PP + PG R S P PPG P P
Sbjct: 873 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 932
Query: 558 PPARALPAAVASARCSLRDPG-GGSARIRSRPGRSGGP 594
PP A V + + G G PG +G P
Sbjct: 933 PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 970
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/231 (25%), Positives = 75/231 (32%), Gaps = 18/231 (7%)
Query: 380 DREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLA 439
D+ A+ QA A +++ R G G G+ PGP P G +
Sbjct: 355 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR--PGPLGQPGSPGLKGESGDLGPQ 412
Query: 440 GQRAGRARARTGSQVGSRGRGWGPGAGRVPSG----GRRGV-GNPERWGGEAAAPRPSRV 494
G R + + G RGR GA +P G RG G P G +
Sbjct: 413 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 472
Query: 495 LLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPS--------ALPGPRPRPDSL 546
LP P D R E E G R GP PP + GP+ SL
Sbjct: 473 GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL 532
Query: 547 SPGEPPGPP---TPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PGPP P + LP + G + PG G P
Sbjct: 533 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 583
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/212 (27%), Positives = 75/212 (35%), Gaps = 31/212 (14%)
Query: 386 RARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR 445
R G ++ R+ G GA+ G G GK GP PA + PG L G +
Sbjct: 1213 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQ 1270
Query: 446 ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA 505
R Q G G PG G RG G + P + L P
Sbjct: 1271 GRPGATGQAGPPGPVGPPGL-----PGLRGDA-----GAKGEKGHPGLIGLIGPPGEQGE 1320
Query: 506 RDTRREP---DAAAQRTELG--GRVGK-GPGAPPSALP---GPRPRPDSLSPG------- 549
+ R P + Q+ E+G G G GPG PP LP GP+ + PG
Sbjct: 1321 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP-GLPGPAGPKGAKGATGPGGPKGEKG 1379
Query: 550 --EPPGPPTPPPARALPAAVASARCSLRDPGG 579
PPG P PP P + + + R G
Sbjct: 1380 VQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDG 1411
Score = 37.7 bits (86), Expect = 0.030
Identities = 47/186 (25%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR- 459
GA G G G GP G +P +PG + G R R Q G G
Sbjct: 1085 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1144
Query: 460 ------------------GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPA 501
G+ G GG RG + GE P P
Sbjct: 1145 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1204
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPAR 561
P +R P A G + GKG P A+ P + + P P G P P R
Sbjct: 1205 GPPGPLGKRGP--AGSPGSEGRQGGKGAKGDPGAIGAP-GKTGPVGPAGPAGKPGPDGLR 1261
Query: 562 ALPAAV 567
LP +V
Sbjct: 1262 GLPGSV 1267
Score = 31.6 bits (70), Expect = 2.2
Identities = 48/167 (28%), Positives = 56/167 (33%), Gaps = 36/167 (21%)
Query: 402 GARAKLGGRGVCGKCGP-------GPWDDPARRRNPGAAA-RAKLAGQRAGRARARTGSQ 453
G R ++G G G+ GP GP DP PG + KL R G +
Sbjct: 647 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGP---PGLMGEKGKLGVPGLPGYPGRQGPK 703
Query: 454 VGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD 513
GS G PGA G RG+ GE P R R
Sbjct: 704 -GSLGFPGFPGASG--EKGARGLSGKSGPRGERGPTGP--------------RGQRGPRG 746
Query: 514 AAAQRTELGGRVGKGPGAPPS--ALPGPRPRPDSLSPGEPPGPPTPP 558
A + G G GP PP LPGP+ P PGP PP
Sbjct: 747 ATGKSGAKGTSGGDGPHGPPGERGLPGPQ------GPNGFPGPKGPP 787
Score = 30.8 bits (68), Expect = 3.7
Identities = 56/197 (28%), Positives = 70/197 (35%), Gaps = 39/197 (19%)
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G +G G+ G PGP DP R PG RAG GS G
Sbjct: 298 GPAGLIGPPGIQGN--PGPVGDPGERGPPG----------RAGLP--------GSDGAPG 337
Query: 462 GPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTEL 521
PG + R G G ++ AA ++ +L + AR R P T
Sbjct: 338 PPGTS-LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ------ARLALRGPPGPMGYTGR 390
Query: 522 GGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPP--TPPPARA---LPAAVASARCSLRD 576
G +G+ PG+ PG + L P P GP T PP +A A AR D
Sbjct: 391 PGPLGQ-PGS-----PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGD 444
Query: 577 PG-GGSARIRSRPGRSG 592
PG G PG G
Sbjct: 445 PGVKGDRGFDGLPGLPG 461
Score = 30.4 bits (67), Expect = 4.8
Identities = 47/175 (26%), Positives = 60/175 (34%), Gaps = 13/175 (7%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCG----PGPWDDPARRRNPGAAARAKLAGQRAGR 445
G+A + R GAR G GV G G PG + R + GA G+ R
Sbjct: 425 GKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGER 484
Query: 446 ARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDP 504
++G RG G G + G G+ P G P L P+ P
Sbjct: 485 G---DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 541
Query: 505 ARD-TRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP 558
+ T + +G KGP P LPG P S P PG PP
Sbjct: 542 GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPG-LPG---MPGSDGPPGHPGKEGPP 592
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 54.3 bits (129), Expect = 3e-07
Identities = 66/215 (30%), Positives = 77/215 (35%), Gaps = 27/215 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRA-RARTGSQ--VGSR 457
G G RG G GP GP P + PGAA + G++ R G Q VG
Sbjct: 1012 GPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLP 1071
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERWG-----GEAAAPRPSRVLLPELPAVDP-ARDTRRE 511
G PG G + VG+P + G GE P P P P P A E
Sbjct: 1072 GPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPG---PIGPVGQPGAAGADGE 1127
Query: 512 PDAAAQRTELGGRVGKGP---GAPPS-----ALPGPRPRPDSLSPGEPPGPPTPPPARAL 563
P A + G + +G PP LPGP P GPP PP R
Sbjct: 1128 PGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRG- 1186
Query: 564 PAAVASARCSLRDPGG----GSARIRSRPGRSGGP 594
PA A PGG G + PG SG P
Sbjct: 1187 PAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSP 1221
Score = 46.6 bits (109), Expect = 6e-05
Identities = 74/278 (26%), Positives = 96/278 (34%), Gaps = 43/278 (15%)
Query: 344 PNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEA--RARLGQAAAQMRREGW 401
P FP G S + GAR G + ++ ER G+ R G++ A+ G
Sbjct: 816 PGFP-------GASGEKGAR-GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 867
Query: 402 GARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGW 461
G G RG+ G GP + P + PG + L G R +VG +G+
Sbjct: 868 GPHGPPGERGLPGPQGPNGFPGP--KGPPGPPGKDGLPGHPGQRG------EVGFQGKTG 919
Query: 462 GPG----------AGRVPSGGRRGVGNPERWGGEAAAPRPSRVL-------LPELPAVDP 504
PG AG G RG P GE P + P P D
Sbjct: 920 PPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDG 979
Query: 505 ARDTRREPDAAAQRTELGG---RVGKGPGAPP--SALPGPRPRPDSLSPGEPPGPPTP-- 557
R P GG + +GP PP + PG R S P PPG P P
Sbjct: 980 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 1039
Query: 558 PPARALPAAVASARCSLRDPG-GGSARIRSRPGRSGGP 594
PP A V + + G G PG +G P
Sbjct: 1040 PPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 1077
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/231 (25%), Positives = 75/231 (32%), Gaps = 18/231 (7%)
Query: 380 DREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLA 439
D+ A+ QA A +++ R G G G+ PGP P G +
Sbjct: 462 DKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGR--PGPLGQPGSPGLKGESGDLGPQ 519
Query: 440 GQRAGRARARTGSQVGSRGRGWGPGAGRVPSG----GRRGV-GNPERWGGEAAAPRPSRV 494
G R + + G RGR GA +P G RG G P G +
Sbjct: 520 GPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 579
Query: 495 LLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPS--------ALPGPRPRPDSL 546
LP P D R E E G R GP PP + GP+ SL
Sbjct: 580 GLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSL 639
Query: 547 SPGEPPGPP---TPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PGPP P + LP + G + PG G P
Sbjct: 640 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPP 690
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/212 (27%), Positives = 75/212 (35%), Gaps = 31/212 (14%)
Query: 386 RARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGR 445
R G ++ R+ G GA+ G G GK GP PA + PG L G +
Sbjct: 1320 RGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGK--PGPDGLRGLPGSVGQQ 1377
Query: 446 ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPA 505
R Q G G PG G RG G + P + L P
Sbjct: 1378 GRPGATGQAGPPGPVGPPGL-----PGLRGDA-----GAKGEKGHPGLIGLIGPPGEQGE 1427
Query: 506 RDTRREP---DAAAQRTELG--GRVGK-GPGAPPSALP---GPRPRPDSLSPG------- 549
+ R P + Q+ E+G G G GPG PP LP GP+ + PG
Sbjct: 1428 KGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP-GLPGPAGPKGAKGATGPGGPKGEKG 1486
Query: 550 --EPPGPPTPPPARALPAAVASARCSLRDPGG 579
PPG P PP P + + + R G
Sbjct: 1487 VQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDG 1518
Score = 37.7 bits (86), Expect = 0.030
Identities = 47/186 (25%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR- 459
GA G G G GP G +P +PG + G R R Q G G
Sbjct: 1192 GADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPP 1251
Query: 460 ------------------GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPA 501
G+ G GG RG + GE P P
Sbjct: 1252 GPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1311
Query: 502 VDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPAR 561
P +R P A G + GKG P A+ P + + P P G P P R
Sbjct: 1312 GPPGPLGKRGP--AGSPGSEGRQGGKGAKGDPGAIGAP-GKTGPVGPAGPAGKPGPDGLR 1368
Query: 562 ALPAAV 567
LP +V
Sbjct: 1369 GLPGSV 1374
Score = 35.0 bits (79), Expect = 0.19
Identities = 71/262 (27%), Positives = 89/262 (33%), Gaps = 46/262 (17%)
Query: 344 PNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQ---MRREG 400
P P G G + +G A A T H A + G+ A M EG
Sbjct: 340 PEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEG 399
Query: 401 ----WGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGS 456
G +G G+ G PGP DP R PG RAG GS
Sbjct: 400 PPGPEGPAGLIGPPGIQGN--PGPVGDPGERGPPG----------RAGLP--------GS 439
Query: 457 RGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAA 516
G PG + R G G ++ AA ++ +L + AR R P
Sbjct: 440 DGAPGPPGTS-LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ------ARLALRGPPGPM 492
Query: 517 QRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPP--TPPPARA---LPAAVASAR 571
T G +G+ PG+ PG + L P P GP T PP +A A AR
Sbjct: 493 GYTGRPGPLGQ-PGS-----PGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGAR 546
Query: 572 CSLRDPG-GGSARIRSRPGRSG 592
DPG G PG G
Sbjct: 547 GMPGDPGVKGDRGFDGLPGLPG 568
Score = 31.6 bits (70), Expect = 2.2
Identities = 48/167 (28%), Positives = 56/167 (33%), Gaps = 36/167 (21%)
Query: 402 GARAKLGGRGVCGKCGP-------GPWDDPARRRNPGAAA-RAKLAGQRAGRARARTGSQ 453
G R ++G G G+ GP GP DP PG + KL R G +
Sbjct: 754 GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGP---PGLMGEKGKLGVPGLPGYPGRQGPK 810
Query: 454 VGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD 513
GS G PGA G RG+ GE P R R
Sbjct: 811 -GSLGFPGFPGASG--EKGARGLSGKSGPRGERGPTGP--------------RGQRGPRG 853
Query: 514 AAAQRTELGGRVGKGPGAPPS--ALPGPRPRPDSLSPGEPPGPPTPP 558
A + G G GP PP LPGP+ P PGP PP
Sbjct: 854 ATGKSGAKGTSGGDGPHGPPGERGLPGPQ------GPNGFPGPKGPP 894
Score = 30.4 bits (67), Expect = 4.8
Identities = 47/175 (26%), Positives = 60/175 (34%), Gaps = 13/175 (7%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCG----PGPWDDPARRRNPGAAARAKLAGQRAGR 445
G+A + R GAR G GV G G PG + R + GA G+ R
Sbjct: 532 GKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGER 591
Query: 446 ARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDP 504
++G RG G G + G G+ P G P L P+ P
Sbjct: 592 G---DDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPP 648
Query: 505 ARD-TRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP 558
+ T + +G KGP P LPG P S P PG PP
Sbjct: 649 GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPG-LPG---MPGSDGPPGHPGKEGPP 699
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 53.9 bits (128), Expect = 4e-07
Identities = 84/354 (23%), Positives = 123/354 (34%), Gaps = 44/354 (12%)
Query: 262 RHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTE 321
R G+ AA GS++ A +AAA ++ R AG Q A AA Q
Sbjct: 124 RRRGQKAAATGSKKPRWRA-----QKSAAAGSKN---RGAG----AQKAAAAAGVKSQGG 171
Query: 322 REPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDR 381
+P AG++ + R + + G +A +R G+ R R
Sbjct: 172 EKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPA 231
Query: 382 EGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQ 441
G A++R G ++ G +A GG+ GK G D RR+ AA LAG
Sbjct: 232 AGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGK-SRGGGDKKLRRQGQNAA----LAGA 286
Query: 442 RAGRARARTGSQVGSRGRG-------------WGPGAGRVP------------SGGRRGV 476
+ R A G + ++GRG WG G G+ P +G +RG
Sbjct: 287 KR-RGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRG-GKKPRRRGQKATKAAAAGTKRGG 344
Query: 477 GNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSAL 536
G ++ R + + P A + + L +G G
Sbjct: 345 GGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRW 404
Query: 537 PGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGR 590
PR R +P G + P R P A S R GG R R + R
Sbjct: 405 QNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKAR 458
Score = 39.7 bits (91), Expect = 0.008
Identities = 61/275 (22%), Positives = 92/275 (33%), Gaps = 28/275 (10%)
Query: 326 GGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEA 385
G G G+ +P +S A L + +G + + + A ++
Sbjct: 14 GRAGPGAPLGAALARTPVELAAESAAPALSAAAAGVKILGSGDKKLRRQKAAAGGKKARL 73
Query: 386 RARLGQAAAQMRREGWGARAKLGG---RG-------VCGKCGPGPWDDPARRRNPGAAAR 435
R + G A + R+ W A GG RG G G RRR AAA
Sbjct: 74 RGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAA- 132
Query: 436 AKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGR-RGVGNPERWGGEAAAPRPSRV 494
G + R RA+ + GS+ RG G +G + +G P++ A R +
Sbjct: 133 ---TGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGK- 188
Query: 495 LLPELPAVDPAR---DTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEP 551
P R +R + D ++ E R GK G P+P
Sbjct: 189 --------KPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRG 240
Query: 552 PG-PPTPPPARALPAAVASARCSLRDPGGGSARIR 585
G P R AA + GGG ++R
Sbjct: 241 GGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLR 275
Score = 39.7 bits (91), Expect = 0.008
Identities = 58/223 (26%), Positives = 76/223 (34%), Gaps = 37/223 (16%)
Query: 254 GDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPA 313
G D + R G AA +RGAA AG P+A GR P L GQ PR
Sbjct: 268 GGGDKKLRRQGQNAALAGAKRRGAATAG--EKPAAKGRGGRG-PKSLGGQNPR------- 317
Query: 314 APRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTT 373
WG G R + Q + + G + V
Sbjct: 318 -----------WGRGGKKPRRR-----------GQKATKAAAAGTKRGGGGQQKAAVVGV 355
Query: 374 HERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGP-WDDPARRRNPGA 432
R R G+ R +AA + G G + L G P W +P RR
Sbjct: 356 KSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAP 415
Query: 433 AARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRG 475
AA+ + G + R R ++ SRG G G+ P RRG
Sbjct: 416 AAKPRGGGSKKPRRRGPKAAK--SRGGKSRSGGGKKPR--RRG 454
Score = 30.4 bits (67), Expect = 4.8
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 16/115 (13%)
Query: 382 EGEARARLGQAAAQMRREGWGARAK-LGGRGVCGKCGPGPWDDPAR-----RRNPGAAAR 435
E A A +GQ A+ R++ RAK G G G PW + + G A+
Sbjct: 672 ESSAAAAVGQ-EAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAK 730
Query: 436 AKLAG----QRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEA 486
++ +G + +G A++R+G + + G GA R RRG G R G +A
Sbjct: 731 SRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKR-----RRGGGAKSRSGEKA 780
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 53.5 bits (127), Expect = 5e-07
Identities = 91/346 (26%), Positives = 114/346 (32%), Gaps = 49/346 (14%)
Query: 280 AGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHD 339
AG LP A G G A PA PA R +Q P G +G
Sbjct: 617 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL--------- 667
Query: 340 ESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
P P P G G P GEA R GE R G Q R
Sbjct: 668 --PGPPGPP----GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPGAQGLQGPRG 720
Query: 400 GWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG 458
G G +G G GP G P + PG A +AG + R G+ G
Sbjct: 721 LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 780
Query: 459 RGWGPG-------AGRVPSGGRRG-VGNPERWG-----------GEAAAPRPSRVLLPEL 499
+ G G G + G +G VG P G GE P P+ P
Sbjct: 781 KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP-- 838
Query: 500 PAVDPARDTRREPDAAAQRTELGGRVGKGP-GAP----PSALPGPRPRPDSLSPGEPPGP 554
P D + E A Q+ + G +GP GAP P+ + GP+ + P G
Sbjct: 839 PGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGF 898
Query: 555 P------TPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PP + P S +D G+ PGR+G P
Sbjct: 899 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 944
Score = 48.5 bits (114), Expect = 2e-05
Identities = 56/207 (27%), Positives = 73/207 (35%), Gaps = 30/207 (14%)
Query: 402 GARAKLGGRGVCGKCG-------PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQV 454
GA LG +G G+ G GP +P GA A G+R R +
Sbjct: 444 GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 455 GSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDA 514
G G PG P G+ G+ P+ GE PS + P+ DP R
Sbjct: 504 GPPGERGAPGNRGFP--GQDGLAGPKGAPGERG---PSGLAGPKGANGDPGRPGEPGLPG 558
Query: 515 AAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVA--SARC 572
A T G G PS PG R PGPP P AR P + +
Sbjct: 559 ARGLTGRPGDAGPQGKVGPSGAPGEDGR---------PGPPGPQGARGQPGVMGFPGPKG 609
Query: 573 SLRDPG-------GGSARIRSRPGRSG 592
+ +PG G+ +R PG+ G
Sbjct: 610 ANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Score = 47.0 bits (110), Expect = 5e-05
Identities = 148/599 (24%), Positives = 178/599 (29%), Gaps = 139/599 (23%)
Query: 34 GQAGHPVVGDTGQFERGCARRHRSPRGHRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSG 93
G+ G P GD G A PRG R PG R + G Q G R L G G
Sbjct: 675 GEGGKP--GDQGVPGEAGAPGLVGPRGER-GFPGER--GSPGAQGLQGPRGLPGTPGTDG 729
Query: 94 QQRDGHRGGHDVGGRGGGGRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDV 153
+ G G G G LQ + G G AG+ G R VG E G
Sbjct: 730 PK--GASGPAGPPGAQGPPGLQGMPGERG-AAGIAGPKGDRGDVGEKGPEGAPG------ 780
Query: 154 LDLQEAGRVHDHELLAGRHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAA 213
++ GR L G G P + E G AG GA E+
Sbjct: 781 ---KDGGRG-----LTGPIGPPGPAGANGEKGEVGPPGPAGSA-GARGAPGER------- 824
Query: 214 GGQHRPVGLEGLA--LDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGL 271
G+ P G G A DG + +Q Q P G G
Sbjct: 825 -GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 883
Query: 272 GSQRGA-ALAGLIYLPSAAA---------------------------AAGRHCPLRLAGQ 303
RGA G P AA A G P AG+
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE 943
Query: 304 APRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGAR 363
PA P + + + P G EG P PQ LA G+ G R
Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEG--------------PPGPQGLAGQRGIVGLPGQR 989
Query: 364 VGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP----G 419
ER G + G+ Q GA G RG G GP G
Sbjct: 990 ----------GERGFPGLPGPS----GEPGKQ------GAPGASGDRGPPGPVGPPGLTG 1029
Query: 420 PWDDPARRRNPGA---AARAKLAGQRAGRARARTGSQVGSRGRGWGPG-AGRV------- 468
P +P R +PGA R AG + R G+ G PG AG
Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG 1089
Query: 469 ---------PSG--GRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAA 516
PSG G RG+ P+ G + A P L + P +
Sbjct: 1090 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1149
Query: 517 QRTELGGRVGKGPGAPPSAL-----------------PGPRPRPDSLSPGEPPGPPTPP 558
+ G GP PP + PGPR R P PPG P PP
Sbjct: 1150 DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1208
Score = 46.2 bits (108), Expect = 8e-05
Identities = 57/198 (28%), Positives = 67/198 (33%), Gaps = 14/198 (7%)
Query: 402 GARAKLGGRGVCGKCGPGPW-DDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
GAR G RG G GP + P PGA AGQ+ G+ G
Sbjct: 816 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 875
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPR---PSRVLLPELPAVDPARDTRREPDAAAQ 517
GP P G R G P G AA R P P P P + P A
Sbjct: 876 -GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG-PPGPSGKDGPKGARG 933
Query: 518 RTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDP 577
+ GR G+ P+ PG + P P GPP P +A R + P
Sbjct: 934 DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG-------PQGLAGQRGIVGLP 986
Query: 578 G-GGSARIRSRPGRSGGP 594
G G PG SG P
Sbjct: 987 GQRGERGFPGLPGPSGEP 1004
Score = 43.1 bits (100), Expect = 7e-04
Identities = 64/232 (27%), Positives = 76/232 (32%), Gaps = 29/232 (12%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRA----- 443
G A A + G + G GV G GP GP P + + G A + AG+R
Sbjct: 213 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 444 -GRARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPS--RVLLPEL 499
R T G +G PG G G GV GE +P P R L E
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332
Query: 500 PAVDPA-----RDTRREPDAAAQRTELGGRVGKG-PGAP-------------PSALPGPR 540
PA R +P A +G G G PGAP P GPR
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 392
Query: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSG 592
P + P G P +P A SA G R PG G
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444
Score = 34.7 bits (78), Expect = 0.25
Identities = 40/142 (28%), Positives = 44/142 (30%), Gaps = 28/142 (19%)
Query: 430 PGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAA 488
PG A G R R G RGR PG G G G P GG AA
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181
Query: 489 PRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGK-GPGAPPSALPGPRPRPDSLS 547
E AQ + G +G GP PP P P+ +
Sbjct: 182 QMAGGF---------------DEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGN 226
Query: 548 PGEPP-----------GPPTPP 558
PGEP GPP PP
Sbjct: 227 PGEPGEPGVSGPMGPRGPPGPP 248
Score = 31.2 bits (69), Expect = 2.8
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 22/93 (23%)
Query: 520 ELGGRVGKGPGAPPSALPGPRPR------PDSLSPGEPPGPPTPPPARALPAAVASARCS 573
E G R +G A PGPR R P + P PPGPP PP L A+
Sbjct: 130 EQGPRGDRGDKGEKGA-PGPRGRDGEPGTPGNPGPPGPPGPPGPP---GLGGNFAAQMAG 185
Query: 574 LRDPGGGSARI------------RSRPGRSGGP 594
D G A++ R PG +G P
Sbjct: 186 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 218
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 53.5 bits (127), Expect = 5e-07
Identities = 91/346 (26%), Positives = 114/346 (32%), Gaps = 49/346 (14%)
Query: 280 AGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHD 339
AG LP A G G A PA PA R +Q P G +G
Sbjct: 548 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGL--------- 598
Query: 340 ESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
P P P G G P GEA R GE R G Q R
Sbjct: 599 --PGPPGPP----GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGE-RGSPGAQGLQGPRG 651
Query: 400 GWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG 458
G G +G G GP G P + PG A +AG + R G+ G
Sbjct: 652 LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG 711
Query: 459 RGWGPG-------AGRVPSGGRRG-VGNPERWG-----------GEAAAPRPSRVLLPEL 499
+ G G G + G +G VG P G GE P P+ P
Sbjct: 712 KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP-- 769
Query: 500 PAVDPARDTRREPDAAAQRTELGGRVGKGP-GAP----PSALPGPRPRPDSLSPGEPPGP 554
P D + E A Q+ + G +GP GAP P+ + GP+ + P G
Sbjct: 770 PGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGF 829
Query: 555 P------TPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PP + P S +D G+ PGR+G P
Sbjct: 830 PGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 875
Score = 48.5 bits (114), Expect = 2e-05
Identities = 56/207 (27%), Positives = 73/207 (35%), Gaps = 30/207 (14%)
Query: 402 GARAKLGGRGVCGKCG-------PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQV 454
GA LG +G G+ G GP +P GA A G+R R +
Sbjct: 375 GATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 455 GSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDA 514
G G PG P G+ G+ P+ GE PS + P+ DP R
Sbjct: 435 GPPGERGAPGNRGFP--GQDGLAGPKGAPGERG---PSGLAGPKGANGDPGRPGEPGLPG 489
Query: 515 AAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVA--SARC 572
A T G G PS PG R PGPP P AR P + +
Sbjct: 490 ARGLTGRPGDAGPQGKVGPSGAPGEDGR---------PGPPGPQGARGQPGVMGFPGPKG 540
Query: 573 SLRDPG-------GGSARIRSRPGRSG 592
+ +PG G+ +R PG+ G
Sbjct: 541 ANGEPGKAGEKGLPGAPGLRGLPGKDG 567
Score = 47.0 bits (110), Expect = 5e-05
Identities = 148/599 (24%), Positives = 178/599 (29%), Gaps = 139/599 (23%)
Query: 34 GQAGHPVVGDTGQFERGCARRHRSPRGHRHAVPGPRLQRALGGQAWAGRRQLHGFMLYSG 93
G+ G P GD G A PRG R PG R + G Q G R L G G
Sbjct: 606 GEGGKP--GDQGVPGEAGAPGLVGPRGER-GFPGER--GSPGAQGLQGPRGLPGTPGTDG 660
Query: 94 QQRDGHRGGHDVGGRGGGGRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDV 153
+ G G G G LQ + G G AG+ G R VG E G
Sbjct: 661 PK--GASGPAGPPGAQGPPGLQGMPGERG-AAGIAGPKGDRGDVGEKGPEGAPG------ 711
Query: 154 LDLQEAGRVHDHELLAGRHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAA 213
++ GR L G G P + E G AG GA E+
Sbjct: 712 ---KDGGRG-----LTGPIGPPGPAGANGEKGEVGPPGPAGSA-GARGAPGER------- 755
Query: 214 GGQHRPVGLEGLA--LDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGL 271
G+ P G G A DG + +Q Q P G G
Sbjct: 756 -GETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP 814
Query: 272 GSQRGA-ALAGLIYLPSAAA---------------------------AAGRHCPLRLAGQ 303
RGA G P AA A G P AG+
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE 874
Query: 304 APRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGAR 363
PA P + + + P G EG P PQ LA G+ G R
Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEG--------------PPGPQGLAGQRGIVGLPGQR 920
Query: 364 VGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP----G 419
ER G + G+ Q GA G RG G GP G
Sbjct: 921 ----------GERGFPGLPGPS----GEPGKQ------GAPGASGDRGPPGPVGPPGLTG 960
Query: 420 PWDDPARRRNPGA---AARAKLAGQRAGRARARTGSQVGSRGRGWGPG-AGRV------- 468
P +P R +PGA R AG + R G+ G PG AG
Sbjct: 961 PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG 1020
Query: 469 ---------PSG--GRRGVGNPER-WGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAA 516
PSG G RG+ P+ G + A P L + P +
Sbjct: 1021 EAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSG 1080
Query: 517 QRTELGGRVGKGPGAPPSAL-----------------PGPRPRPDSLSPGEPPGPPTPP 558
+ G GP PP + PGPR R P PPG P PP
Sbjct: 1081 DQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1139
Score = 46.2 bits (108), Expect = 8e-05
Identities = 57/198 (28%), Positives = 67/198 (33%), Gaps = 14/198 (7%)
Query: 402 GARAKLGGRGVCGKCGPGPW-DDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
GAR G RG G GP + P PGA AGQ+ G+ G
Sbjct: 747 GARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ 806
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPR---PSRVLLPELPAVDPARDTRREPDAAAQ 517
GP P G R G P G AA R P P P P + P A
Sbjct: 807 -GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG-PPGPSGKDGPKGARG 864
Query: 518 RTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDP 577
+ GR G+ P+ PG + P P GPP P +A R + P
Sbjct: 865 DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG-------PQGLAGQRGIVGLP 917
Query: 578 G-GGSARIRSRPGRSGGP 594
G G PG SG P
Sbjct: 918 GQRGERGFPGLPGPSGEP 935
Score = 43.1 bits (100), Expect = 7e-04
Identities = 64/232 (27%), Positives = 76/232 (32%), Gaps = 29/232 (12%)
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRA----- 443
G A A + G + G GV G GP GP P + + G A + AG+R
Sbjct: 144 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 444 -GRARARTGSQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPS--RVLLPEL 499
R T G +G PG G G GV GE +P P R L E
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263
Query: 500 PAVDPA-----RDTRREPDAAAQRTELGGRVGKG-PGAP-------------PSALPGPR 540
PA R +P A +G G G PGAP P GPR
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 323
Query: 541 PRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSG 592
P + P G P +P A SA G R PG G
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 375
Score = 36.2 bits (82), Expect = 0.087
Identities = 51/180 (28%), Positives = 60/180 (33%), Gaps = 32/180 (17%)
Query: 393 AAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNP-GAAARAKLAGQRAGRARARTG 451
AA +R +G R G +G G+ PG D + P G A G R R
Sbjct: 18 AAVLRCQGQDVRQP-GPKGQKGE--PGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEK 74
Query: 452 SQVGSRGRGWGPGA-GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRR 510
G RGR PG G G G P GG AA
Sbjct: 75 GAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF---------------D 119
Query: 511 EPDAAAQRTELGGRVGK-GPGAPPSALPGPRPRPDSLSPGEPP-----------GPPTPP 558
E AQ + G +G GP PP P P+ +PGEP GPP PP
Sbjct: 120 EKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP 179
Score = 31.2 bits (69), Expect = 2.8
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 22/93 (23%)
Query: 520 ELGGRVGKGPGAPPSALPGPRPR------PDSLSPGEPPGPPTPPPARALPAAVASARCS 573
E G R +G A PGPR R P + P PPGPP PP L A+
Sbjct: 61 EQGPRGDRGDKGEKGA-PGPRGRDGEPGTPGNPGPPGPPGPPGPP---GLGGNFAAQMAG 116
Query: 574 LRDPGGGSARI------------RSRPGRSGGP 594
D G A++ R PG +G P
Sbjct: 117 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 149
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 53.5 bits (127), Expect = 5e-07
Identities = 58/175 (33%), Positives = 64/175 (36%), Gaps = 28/175 (16%)
Query: 381 REGEARARLGQAAAQMRRE----GWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARA 436
R+G AR R + RR G G R R P P ++P R P AAR
Sbjct: 9 RQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPR----PAPPRPGEEPGNRHPPPPAART 64
Query: 437 KLAGQRAGRARARTGSQVGSRGRG-WGPGAGRVPSGGRRGVGNPER---WG----GEAAA 488
G RAR S RG W GR + PER W G AAA
Sbjct: 65 -----HPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAA 119
Query: 489 PRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRP 543
P P R L P P + R P A L G G APPS P PR RP
Sbjct: 120 PAPGRDALRLPPPPPPPPERPRLPPAG-----LAG--GPADSAPPSPAPAPRSRP 167
Score = 43.9 bits (102), Expect = 4e-04
Identities = 52/172 (30%), Positives = 63/172 (36%), Gaps = 18/172 (10%)
Query: 437 KLAGQRAGRARARTGSQVGSRGRG---WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSR 493
K +G+R GRAR R SQV R +GPG R P R P G P P+
Sbjct: 4 KASGRRQGRARGRPHSQVSLARRAPLMFGPGL-RDPPPPRPAPPRPGEEPGNRHPPPPAA 62
Query: 494 VLLP---ELPAVDPARDTRREPDAAA---QRTELGGRVGKGPGAP------PSALPGPRP 541
P PA R P AA QR + G + P + P P
Sbjct: 63 RTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAP 122
Query: 542 RPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGG 593
D+L PP PP PP LP A + + P + RSRP G
Sbjct: 123 GRDALRL--PPPPPPPPERPRLPPAGLAGGPADSAPPSPAPAPRSRPAPRPG 172
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 52.8 bits (125), Expect = 9e-07
Identities = 172/640 (26%), Positives = 205/640 (32%), Gaps = 174/640 (27%)
Query: 34 GQAGHPVVGDTGQFERGCA---------------RRHRSPRGHRHAVPGPRLQRALGGQA 78
GQAG P+ G R A RRH RG R A GP L G
Sbjct: 416 GQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGA--GPEGAGRLAGP- 472
Query: 79 WAGRRQLHGFMLYSGQQRDGHRGGHD----------VGGRGGGGR----------LQLVA 118
W G R L +L Q H G H+ VGG G G+ +L A
Sbjct: 473 WRGLR-LQTLLL----QDAPHGGAHEHVLVAVPATGVGGLVGAGQGAVAAAGNAPERLPA 527
Query: 119 GALGLGAGV-LDHSGLRVAVGRAH------------LEHEVGAALHDVLDLQEAGRVHDH 165
G G G V G RVA G L ++G A H + G +
Sbjct: 528 GVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAPHAHVPTVLGGALGGR 587
Query: 166 ELLAG---RHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQH----- 217
L R PAR G RHG G G + + AGG H
Sbjct: 588 AGLVAAPARRECPARRRGGCWPRRPRRRHGGGG--GGGGPGLQDLLGGGHAGGAHGHVVV 645
Query: 218 -----RPVGLEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQ---------HLRH 263
P EG A H GH+AV Q V A P DLDV HL
Sbjct: 646 APAAAAPTAREGRAGRH-GHVAVVCPQ---VAAG---APVGADLDVSVVLWVGVVGHLGR 698
Query: 264 G---GRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPL---RLAGQAPRTQPACPAAPRM 317
G GRA A ++ G G +++ G H PL R G P QP+ R+
Sbjct: 699 GRGAGRAEAARAAREGGPHQG-VFIQRGRGGLG-HRPLPGWRGQGVGPLAQPSVQVLGRV 756
Query: 318 QQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERA 377
R+P G ++A+G P G E A R
Sbjct: 757 P---RDPAVGAA-------------------TVAQG----PVHGHVPVELTAAAAVSGRG 790
Query: 378 HLDREGEARARLGQAAAQMRREGWGARAKLGGR--GVCGKCGPGPWDDPARRRNPGAAAR 435
L R+G R+ AA+ + W + G GV G R GAAA
Sbjct: 791 RL-RDG--LGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGA-----------RGGGAAAG 836
Query: 436 AKLAGQ----------RAGRAR--ARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWG 483
LAG RAGR R AR + G +G G G G RV G G +R
Sbjct: 837 GPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQR-- 894
Query: 484 GEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRP 543
P R R AAA G R +G P A P R
Sbjct: 895 -------------------APCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRH 935
Query: 544 DSLSPGEPPGPPTPPPARALPAAVASARCSL-RDPGGGSA 582
PG A AL AR +L R GGG A
Sbjct: 936 ---RPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Score = 45.1 bits (105), Expect = 2e-04
Identities = 124/472 (26%), Positives = 156/472 (33%), Gaps = 90/472 (19%)
Query: 56 RSPRGHRHAVPGPRLQRALGG---------------QAWAGRRQLHGFMLYS----GQQR 96
R PR G RLQ + GG A+ R HG + + G+ R
Sbjct: 204 RGPRPALRCQRGRRLQLSWGGGRLVAPSRADTHAALAAFPERDIFHGGRVVALGVVGEGR 263
Query: 97 DGHRGGHDVGGRGGG-----GRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALH 151
GH G GG G G L++ A LG GV +GL+ + HL HE LH
Sbjct: 264 -GHGGDRRGGGEGLGTVAAAAPLRVCADDLGAAVGVRGLAGLQEGLDSRHLLHE-AQPLH 321
Query: 152 DVLDLQEAGRVHDHELLAGRHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVE 211
+ AG L GR D L GG H L G + + +
Sbjct: 322 ---ARRRAGHAGSFWLRGGR-----------DRLRRGGGHTKSHL-GVVTIVPGR--RGR 364
Query: 212 AAGGQHRPVGLEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGL 271
AAGGQ R G QQ + + P + +DV L A GL
Sbjct: 365 AAGGQER------------GGRGRRRQQGR--RGRRQAGPGLAKVDVDVL----AGALGL 406
Query: 272 GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTE-REPWGGEGA 330
Q AG P A G H P LA +A R A P R + G EGA
Sbjct: 407 RWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGA 466
Query: 331 GS-----RFKRLH----DESPRPNFPQSL---AEGLGVSPQAGARVGEAREAVTTHERAH 378
G R RL ++P + + GV GA G A ER
Sbjct: 467 GRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGVGGLVGAGQGAVAAAGNAPERLP 526
Query: 379 LDREGEARARLGQAAAQMRREGWGARAKLGGR--GVC---GKCGPGPWDDPARRRNPGAA 433
+G +G+ A R G G+ +C G+ G P
Sbjct: 527 AGVQG-CGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAPHAHVPTVLGGALG 585
Query: 434 ARAKLAGQRAGR---ARARTG-------SQVGSRGRGWGPGAGRVPSGGRRG 475
RA L A R AR R G + G G G GPG + GG G
Sbjct: 586 GRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAG 637
Score = 41.2 bits (95), Expect = 0.003
Identities = 61/203 (30%), Positives = 75/203 (36%), Gaps = 48/203 (23%)
Query: 59 RGHRHAVPGPRLQRALGGQAWAGR-------RQLHGFMLYSGQQRDGHRG----GHDVGG 107
+GH V G A GG A AG +++ + +G++R G R G G
Sbjct: 818 QGHEAGVAGG----ARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAG 873
Query: 108 RGGGGRLQLVAGALGLGAGVLDHS------------------GLRVAVGRAHLEHEVGAA 149
GGGGR V G GA VL + G+R A GRAH GA
Sbjct: 874 AGGGGRR--VRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAP 931
Query: 150 LHDVLDLQEAGRVHDHELLAGRHG-EPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVA 208
H R +A G PAR A G+ R G GQ AV A
Sbjct: 932 SHRHRPGARGRRSRRRAAVALAGGAHPARAALGR-------RRGGGQ-----AVGARAAH 979
Query: 209 EVEAAGGQHRPVGLEGLALDHDG 231
+ AGGQ V + A D DG
Sbjct: 980 QARLAGGQVDQVVVAARAGDADG 1002
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 52.8 bits (125), Expect = 9e-07
Identities = 172/640 (26%), Positives = 205/640 (32%), Gaps = 174/640 (27%)
Query: 34 GQAGHPVVGDTGQFERGCA---------------RRHRSPRGHRHAVPGPRLQRALGGQA 78
GQAG P+ G R A RRH RG R A GP L G
Sbjct: 416 GQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGA--GPEGAGRLAGP- 472
Query: 79 WAGRRQLHGFMLYSGQQRDGHRGGHD----------VGGRGGGGR----------LQLVA 118
W G R L +L Q H G H+ VGG G G+ +L A
Sbjct: 473 WRGLR-LQTLLL----QDAPHGGAHEHVLVAVPATGVGGLVGAGQGAVAAAGNAPERLPA 527
Query: 119 GALGLGAGV-LDHSGLRVAVGRAH------------LEHEVGAALHDVLDLQEAGRVHDH 165
G G G V G RVA G L ++G A H + G +
Sbjct: 528 GVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAPHAHVPTVLGGALGGR 587
Query: 166 ELLAG---RHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQH----- 217
L R PAR G RHG G G + + AGG H
Sbjct: 588 AGLVAAPARRECPARRRGGCWPRRPRRRHGGGG--GGGGPGLQDLLGGGHAGGAHGHVVV 645
Query: 218 -----RPVGLEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQ---------HLRH 263
P EG A H GH+AV Q V A P DLDV HL
Sbjct: 646 APAAAAPTAREGRAGRH-GHVAVVCPQ---VAAG---APVGADLDVSVVLWVGVVGHLGR 698
Query: 264 G---GRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPL---RLAGQAPRTQPACPAAPRM 317
G GRA A ++ G G +++ G H PL R G P QP+ R+
Sbjct: 699 GRGAGRAEAARAAREGGPHQG-VFIQRGRGGLG-HRPLPGWRGQGVGPLAQPSVQVLGRV 756
Query: 318 QQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERA 377
R+P G ++A+G P G E A R
Sbjct: 757 P---RDPAVGAA-------------------TVAQG----PVHGHVPVELTAAAAVSGRG 790
Query: 378 HLDREGEARARLGQAAAQMRREGWGARAKLGGR--GVCGKCGPGPWDDPARRRNPGAAAR 435
L R+G R+ AA+ + W + G GV G R GAAA
Sbjct: 791 RL-RDG--LGRVASVAAEGAQVAWAGAVLVQGHEAGVAGGA-----------RGGGAAAG 836
Query: 436 AKLAGQ----------RAGRAR--ARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWG 483
LAG RAGR R AR + G +G G G G RV G G +R
Sbjct: 837 GPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQR-- 894
Query: 484 GEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRP 543
P R R AAA G R +G P A P R
Sbjct: 895 -------------------APCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRH 935
Query: 544 DSLSPGEPPGPPTPPPARALPAAVASARCSL-RDPGGGSA 582
PG A AL AR +L R GGG A
Sbjct: 936 ---RPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Score = 45.1 bits (105), Expect = 2e-04
Identities = 124/472 (26%), Positives = 156/472 (33%), Gaps = 90/472 (19%)
Query: 56 RSPRGHRHAVPGPRLQRALGG---------------QAWAGRRQLHGFMLYS----GQQR 96
R PR G RLQ + GG A+ R HG + + G+ R
Sbjct: 204 RGPRPALRCQRGRRLQLSWGGGRLVAPSRADTHAALAAFPERDIFHGGRVVALGVVGEGR 263
Query: 97 DGHRGGHDVGGRGGG-----GRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALH 151
GH G GG G G L++ A LG GV +GL+ + HL HE LH
Sbjct: 264 -GHGGDRRGGGEGLGTVAAAAPLRVCADDLGAAVGVRGLAGLQEGLDSRHLLHE-AQPLH 321
Query: 152 DVLDLQEAGRVHDHELLAGRHGEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVE 211
+ AG L GR D L GG H L G + + +
Sbjct: 322 ---ARRRAGHAGSFWLRGGR-----------DRLRRGGGHTKSHL-GVVTIVPGR--RGR 364
Query: 212 AAGGQHRPVGLEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGL 271
AAGGQ R G QQ + + P + +DV L A GL
Sbjct: 365 AAGGQER------------GGRGRRRQQGR--RGRRQAGPGLAKVDVDVL----AGALGL 406
Query: 272 GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTE-REPWGGEGA 330
Q AG P A G H P LA +A R A P R + G EGA
Sbjct: 407 RWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGA 466
Query: 331 GS-----RFKRLH----DESPRPNFPQSL---AEGLGVSPQAGARVGEAREAVTTHERAH 378
G R RL ++P + + GV GA G A ER
Sbjct: 467 GRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGVGGLVGAGQGAVAAAGNAPERLP 526
Query: 379 LDREGEARARLGQAAAQMRREGWGARAKLGGR--GVC---GKCGPGPWDDPARRRNPGAA 433
+G +G+ A R G G+ +C G+ G P
Sbjct: 527 AGVQG-CGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLHGQLGTAPHAHVPTVLGGALG 585
Query: 434 ARAKLAGQRAGR---ARARTG-------SQVGSRGRGWGPGAGRVPSGGRRG 475
RA L A R AR R G + G G G GPG + GG G
Sbjct: 586 GRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAG 637
Score = 41.2 bits (95), Expect = 0.003
Identities = 61/203 (30%), Positives = 75/203 (36%), Gaps = 48/203 (23%)
Query: 59 RGHRHAVPGPRLQRALGGQAWAGR-------RQLHGFMLYSGQQRDGHRG----GHDVGG 107
+GH V G A GG A AG +++ + +G++R G R G G
Sbjct: 818 QGHEAGVAGG----ARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAG 873
Query: 108 RGGGGRLQLVAGALGLGAGVLDHS------------------GLRVAVGRAHLEHEVGAA 149
GGGGR V G GA VL + G+R A GRAH GA
Sbjct: 874 AGGGGRR--VRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAP 931
Query: 150 LHDVLDLQEAGRVHDHELLAGRHG-EPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVA 208
H R +A G PAR A G+ R G GQ AV A
Sbjct: 932 SHRHRPGARGRRSRRRAAVALAGGAHPARAALGR-------RRGGGQ-----AVGARAAH 979
Query: 209 EVEAAGGQHRPVGLEGLALDHDG 231
+ AGGQ V + A D DG
Sbjct: 980 QARLAGGQVDQVVVAARAGDADG 1002
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 52.4 bits (124), Expect = 1e-06
Identities = 88/359 (24%), Positives = 122/359 (33%), Gaps = 49/359 (13%)
Query: 223 EGLALDHDGHIAVEAQQAL-LVQAAQHCVPEVGDLDVQHLRH-GGRAAAGLGSQRGAAL- 279
EG LD D H V +A L Q + D RH GG A + +RG A
Sbjct: 3557 EGYILD-DSHCVVSDSEAYHLGQEETDWFDKPRDARSDRFRHHGGHAVSSSSQKRGPARH 3615
Query: 280 ----------AGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEG 329
GL P GRH A + + T EP G
Sbjct: 3616 SYHDYDEPPEEGL--WPHDEGGPGRHA------SAKEHRHGDHGRHSGRHTGEEP-GRRA 3666
Query: 330 AGSRFKRLHDESPRPNFPQSLAEGLGVSPQAG----ARVGEAREAVTTHERAHLDREGEA 385
A + L RP+ S A + Q G A + A + + A ++G
Sbjct: 3667 AKPHARDLGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSR 3726
Query: 386 RARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDD--PARRRNPGAAARAKLAGQRA 443
+A G AA Q + E A+ +L GR + PGP P+ R+ P +
Sbjct: 3727 QAHSGPAALQSKAEPQ-AQPQLQGR----QAAPGPQQSQSPSSRQIP------------S 3769
Query: 444 GRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLP---ELP 500
G A + +Q +G G P + + P G AA +P+ P
Sbjct: 3770 GAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTAT 3829
Query: 501 AVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPP 559
PA R E ++ T + G+ P A P+ PGP PG PG P P
Sbjct: 3830 GPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQP 3888
Score = 43.1 bits (100), Expect = 7e-04
Identities = 43/166 (25%), Positives = 59/166 (35%), Gaps = 18/166 (10%)
Query: 417 GPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGV 476
GPGP P + P A A GQ AR+ + G G GPG G P R +
Sbjct: 24 GPGPGPGPGAGKPPSAPAGG---GQLPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRL 80
Query: 477 GNPERWGGEAAAPRPSRVLLPELPAVDPARDTR------REPDAAAQRTELGGRVGKGPG 530
E G + AA + P + R+TR +E D + ++ R + G
Sbjct: 81 DPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTLQVDSRTQRS-G 139
Query: 531 APPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRD 576
PS P P S P + P LP++ C D
Sbjct: 140 RSPSVSPDRGSTPTS--------PYSVPQIAPLPSSTLCPICKTSD 177
Score = 36.6 bits (83), Expect = 0.067
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 488 APRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPG------APPSALPGPR- 540
APR PA+ PA ++P + G G PG A +++PGP
Sbjct: 233 APRSKSQQQLHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSRQAETARATSVPGPAQ 292
Query: 541 ----PRPDSLSPGEPPGPPTPPPARAL-PAAVASARCSLRDPGGGSARIRSRPGRSG 592
P +SP +PP P P A PA A A+ + P G A +++ G +G
Sbjct: 293 AAAPPEVGRVSP-QPPQPTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTG 348
Score = 35.8 bits (81), Expect = 0.11
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRD-PGG 579
L G G GP P A PGP P P PG P P LPAA A+ ++ PG
Sbjct: 7 LEGGAGDGPLPPGGAGPGPGPGP---GPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGP 63
Query: 580 GSARIRSRPGRSGGP 594
G PG GP
Sbjct: 64 GPG-----PGPGPGP 73
Score = 35.4 bits (80), Expect = 0.15
Identities = 45/148 (30%), Positives = 51/148 (34%), Gaps = 41/148 (27%)
Query: 458 GRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQ 517
G G GPG G P G G P +AP +LPA AR T P
Sbjct: 20 GAGPGPGPGPGP-----GAGKP------PSAPAGG----GQLPAAGAARSTAVPP----- 59
Query: 518 RTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPG-----PPTPPPARA-LPAAVASAR 571
GPG P PGP L P EP G PTP A A P +
Sbjct: 60 --------VPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRE 111
Query: 572 CSLRDPGGGSA-------RIRSRPGRSG 592
+ P G A ++ SR RSG
Sbjct: 112 TRAQGPAGQEADGPRRTLQVDSRTQRSG 139
Score = 32.0 bits (71), Expect = 1.7
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 15/149 (10%)
Query: 425 ARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGG 484
A R P A AK A A +Q G G+ +G GA + PE
Sbjct: 315 AEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQASTLMSVQPE--AD 372
Query: 485 EAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPD 544
P PS+ P++ D +++ +P LG G GP PG R P
Sbjct: 373 TQGQPAPSKGT-PKIVFNDASKEAGPKP--------LGSGPGPGPAPGAKTEPGARMGPG 423
Query: 545 SLSPGEPP---GPPTPPPARALPAAVASA 570
S PG P G +P RA A + A
Sbjct: 424 S-GPGALPKTGGTTSPKHGRAEHQAASKA 451
Score = 30.0 bits (66), Expect = 6.3
Identities = 54/215 (25%), Positives = 78/215 (36%), Gaps = 34/215 (15%)
Query: 364 VGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDD 423
V R + H + D + +A A AAA +R A + +G + + C D
Sbjct: 2626 VRRRRSRLPRHSDSGSDSKHDATASSSSAAATVR-----AMSSVGIQTI-SDCSVQTEPD 2679
Query: 424 PARRRNPG----AAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNP 479
R +P AA K+ R A +TG RG P G +GV P
Sbjct: 2680 QLPRVSPAIHITAATDPKVEIVRYISAPEKTG-------RGESLACQTEPDGQAQGVAGP 2732
Query: 480 ERWGGEAAAPRPSRVLLPELPAVDP---ARDTRREPDAAAQRTELGGRVGKGPGAPPSAL 536
+ G A +P LP + V P R +++PD +G PP +L
Sbjct: 2733 QLVGPTAISP-----YLPGIQIVTPGPLGRFEKKKPDPL--------EIGYQAHLPPESL 2779
Query: 537 PGPRPRPDSLSPGEPPGPPTP-PPARALPAAVASA 570
R SP P +P P R L + AS+
Sbjct: 2780 SQLVSRQPPKSPQVLYSPVSPLSPHRLLDTSFASS 2814
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.0 bits (123), Expect = 2e-06
Identities = 152/596 (25%), Positives = 189/596 (31%), Gaps = 76/596 (12%)
Query: 10 PAGSTSTDILYGLCGHLLDAGDEGGQAGHPVVGDTGQFERGCARRHRSPRGHR--HAVPG 67
PAGS L G G +AG G Q V GD G AR R G R PG
Sbjct: 636 PAGSPGFQGLPGPAGPPGEAGKPGEQG---VPGDLGAPGPSGARGERGFPGERGVQGPPG 692
Query: 68 PRLQRALGGQAWAGRRQLHGFMLYSGQQRDGHRGGHDVGGRGGGGRLQLVAGALGLGAGV 127
P AG R +G G + D G G G LQ + G G AG+
Sbjct: 693 P-----------AGPRGANGAPGNDGAKGDA--GAPGAPGSQGAPGLQGMPGERG-AAGL 738
Query: 128 LDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPARVAEGQDLLEA 187
G R G + G ++ R L G G P D E+
Sbjct: 739 PGPKGDRGDAGPKGADGSPG---------KDGVRG-----LTGPIGPPGPAGAPGDKGES 784
Query: 188 GGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGL--ALDHDGHIAVEAQQALLVQA 245
G AG A G P G +G A G + A
Sbjct: 785 GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA 844
Query: 246 AQHCVP-EVGDLDVQHLRHGGRAAAGLGSQRG-AALAGLIYLPSAAAAAGRHCPLRLAGQ 303
P +G++ + G R +AG G AG + P + AG P AG+
Sbjct: 845 GPAGPPGPIGNVGAPGAK-GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 903
Query: 304 APRTQPACPAAPRMQQTEREPWGGEG-AGSRFKRLHDE---SPRPNFPQSLAEGLGVSPQ 359
P P + E P G G AG + D +P PQ +A GV
Sbjct: 904 EGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGL 963
Query: 360 AGARVGEAREAVTTHERAHLDREGEARAR-------------LGQAAAQMRREGW----- 401
G R GE ++G + A L + REG
Sbjct: 964 PGQR-GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 1022
Query: 402 --GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG 458
G G +G G+ GP GP P PG A +G R A VG G
Sbjct: 1023 SPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVG 1082
Query: 459 RGWGPGAGRVPSG--------GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRR 510
GP + P G G RG+ + G P P + P+ R
Sbjct: 1083 AR-GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141
Query: 511 EPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAA 566
P +A G G PG P PGPR R P PPGPP PP P+A
Sbjct: 1142 GPPGSAGAPGKDGLNGL-PG--PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
Score = 50.8 bits (120), Expect = 3e-06
Identities = 88/344 (25%), Positives = 106/344 (30%), Gaps = 63/344 (18%)
Query: 290 AAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPW--GGEGAGSRFKRLHDESPRPNFP 347
+ G P + PR P P AP Q + P G GA PR
Sbjct: 171 STGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM------GPR---- 220
Query: 348 QSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKL 407
G P GEA + ER +G AR G A + G
Sbjct: 221 -----GPPGPPGKNGDDGEAGKPGRPGERGPPGPQG-ARGLPGTAGLPGMKGHRGFSGLD 274
Query: 408 GGRGVCGKCGP----------------GPWDDPARRRNPGAAARAKLAGQRAGRARARTG 451
G +G G GP GP P R PGA A G A
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP 334
Query: 452 SQVGSRGRGWGPGA----GRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARD 507
G G PGA G G RG P+ GE P P+ PA +P D
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGA---AGPAGNPGAD 391
Query: 508 TRREPDAAAQRTELGGRVG----KGPGAPPSALPGPRPRPDSLSPGEP--------PGPP 555
+ A + G G +GP P P P+ +S PG P G P
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEP 451
Query: 556 TP-----PPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
P PP PA R + +P G + PG GGP
Sbjct: 452 GPVGVQGPPG---PAGEEGKRGARGEP--GPTGLPGPPGERGGP 490
Score = 50.1 bits (118), Expect = 6e-06
Identities = 61/230 (26%), Positives = 71/230 (30%), Gaps = 39/230 (16%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
G+ K G RG+ G GP GP P + G + A G R G G
Sbjct: 755 GSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 461 WGPGAGRVPSG-------GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD 513
PGA P G +G P G A P P + P AR + P
Sbjct: 815 GPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNV--GAPGAKGARGSAGPPG 872
Query: 514 AAAQRTELG-----------------GRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP-- 554
A G G GK G P GP RP + P PPGP
Sbjct: 873 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAG 932
Query: 555 ---------PTPPPARALPAAVASARCSLRDPG-GGSARIRSRPGRSGGP 594
P P P +A R + PG G PG SG P
Sbjct: 933 EKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEP 982
Score = 47.4 bits (111), Expect = 4e-05
Identities = 95/350 (27%), Positives = 114/350 (32%), Gaps = 64/350 (18%)
Query: 264 GGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTERE 323
G + AAG + G G+ P A AG+ G+A P PA P ++ E+
Sbjct: 584 GPKGAAGEPGKAGER--GVPGPPGAVGPAGKD------GEAGAQGPPGPAGPAGERGEQG 635
Query: 324 PWGGEGAGSRFKRLHDESPRPNFP-----QSLAEGLGVSPQAGARVGEAREAVTTHERAH 378
P G G F+ L + P Q + LG +GAR ER
Sbjct: 636 PAGSPG----FQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGAR----------GERGF 681
Query: 379 LDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCG-PGPWDDPARRRNPGAAARAK 437
G G R GA G +G G G PG P + PG A
Sbjct: 682 PGERGVQ----GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAG 737
Query: 438 LAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLP 497
L G + R A G +G PG G RG+ P G A AP P
Sbjct: 738 LPGPKGDRGDA------GPKGADGSPG-----KDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 498 ELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSA--LPGPRPRPDSL--------- 546
PA A R E G G PP A PG + P
Sbjct: 787 SGPA-----GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP 841
Query: 547 SPGEPPGPPTPPPARALPAAVASARCSLRDPGG----GSARIRSRPGRSG 592
P P GPP P P A AR S PG G+A PG SG
Sbjct: 842 GPAGPAGPPGPIGNVGAPGA-KGARGSAGPPGATGFPGAAGRVGPPGPSG 890
Score = 45.8 bits (107), Expect = 1e-04
Identities = 91/346 (26%), Positives = 110/346 (31%), Gaps = 42/346 (12%)
Query: 272 GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQ-----QTEREPWG 326
G+ +AG P A +G P G P+ P AP + + E P G
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQGPGGPPG--PKGNSGEPGAPGSKGDTGAKGEPGPVG 455
Query: 327 GEG----AGSRFKRLHDESPRPNF---PQSLAEGLGVSPQAGAR-----VGEAREAVTTH 374
+G AG KR P P P G G GA G A E +
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 515
Query: 375 ERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDD-PARRRNPGAA 433
GEA R G+A + G+ G G G GP D P PGA
Sbjct: 516 PAGPKGSPGEA-GRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGAR 574
Query: 434 ARAKLAGQRAGRARARTGSQVGSRGRGWGPGA----GRVPSGGRRGVGNPERWGGEAAAP 489
+A + G + A + G RG PGA G+ G +G P GE
Sbjct: 575 GQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQ 634
Query: 490 RPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAP-PSALPGPRPRPDSLSP 548
P+ P P A + E G V GAP PS G R P
Sbjct: 635 GPAGS-----PGFQGLPGPAGPPGEAGKPGEQG--VPGDLGAPGPSGARGERGFPGERGV 687
Query: 549 GEPPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
PPGP P A P D G A PG G P
Sbjct: 688 QGPPGPAGPRGANGAPG---------NDGAKGDAGAPGAPGSQGAP 724
Score = 45.8 bits (107), Expect = 1e-04
Identities = 93/348 (26%), Positives = 110/348 (31%), Gaps = 65/348 (18%)
Query: 264 GGRAAAGLGSQRG----AALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQ 319
G R AAGL +G A G P G P+ P PA +
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG---------PPGPAGAPGDK 781
Query: 320 TEREPWGGEG-AGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAH 378
E P G G G+R P P P A G Q GA+ GE +A +
Sbjct: 782 GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK-GEPGDAGAKGDAGP 840
Query: 379 LDREGEAR-----ARLGQAAAQMRREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGA 432
G A +G A+ R G G G G+ GP GP + PG
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP 900
Query: 433 AARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPS 492
A + G R A +VG G GP + G G P G + A +
Sbjct: 901 AGKEGGKGPRGETGPAGRPGEVGPPGPP-GPAGEKGSPGADGPAGAPGTPGPQGIAGQRG 959
Query: 493 RVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSP---- 548
V LP QR E G PG LPGP P P
Sbjct: 960 VVGLP------------------GQRGERGF-----PG-----LPGPSGEPGKQGPSGAS 991
Query: 549 GE--PPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
GE PPGP PP P S R G+ PGR G P
Sbjct: 992 GERGPPGPMGPPGLAGPPG--ESGR-------EGAPGAEGSPGRDGSP 1030
Score = 42.4 bits (98), Expect = 0.001
Identities = 88/352 (25%), Positives = 106/352 (30%), Gaps = 76/352 (21%)
Query: 264 GGRAAAGLGSQRGAA-LAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTER 322
G A G RG+A G P AA G P AG P P P ++ +
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG------PPGPPGPAGKEGGK 907
Query: 323 EPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDRE 382
P G G R + P P P G AGA + + +R +
Sbjct: 908 GPRGETGPAGRPGEVGP--PGPPGPAGEKGSPGADGPAGAPGTPGPQGIAG-QRGVVGLP 964
Query: 383 GEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQ 441
G+ G+ G K G G G+ GP GP P PG + R G
Sbjct: 965 GQR----GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGA 1020
Query: 442 RAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPA 501
GS GR PGA G G P G AP P
Sbjct: 1021 E------------GSPGRDGSPGA--KGDRGETGPAGPPGAPGAPGAPGP---------- 1056
Query: 502 VDPARDT--RREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGE--------- 550
V PA + R E A +G +GP P PR D GE
Sbjct: 1057 VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG------PRGDKGETGEQGDRGIKGH 1110
Query: 551 --------PPGPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
PPGPP P + A G A R PG +G P
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGA------------SGPAGPRGPPGSAGAP 1150
Score = 35.8 bits (81), Expect = 0.11
Identities = 41/139 (29%), Positives = 45/139 (32%), Gaps = 9/139 (6%)
Query: 462 GPGAGRVPSGGRRGVGNPERWG--GEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRT 519
GP P G R G P R G G+ P P P P P P +
Sbjct: 112 GPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPG---PPGPPGPPGLGGNFAPQLSYGYD 168
Query: 520 E--LGGRVGKGPGAP--PSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLR 575
E GG GP P P LPGP P PPG P P A +
Sbjct: 169 EKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGK 228
Query: 576 DPGGGSARIRSRPGRSGGP 594
+ G A RPG G P
Sbjct: 229 NGDDGEAGKPGRPGERGPP 247
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 51.6 bits (122), Expect = 2e-06
Identities = 35/88 (39%), Positives = 39/88 (44%), Gaps = 24/88 (27%)
Query: 522 GGRVGKGPGAPPSALPGPRPRPDSLSPGE---PPGPPTPPP------------ARALPAA 566
GGR G+ PGA P+ PGP P P P + PP PP PPP A ALP
Sbjct: 7 GGRPGESPGATPA--PGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPE 64
Query: 567 VASARCSLRDPGGGSARIRSRPGRSGGP 594
A D GG R+RSR G P
Sbjct: 65 AA-------DEGGPRGRLRSRDSSCGRP 85
Score = 33.1 bits (74), Expect = 0.74
Identities = 32/95 (33%), Positives = 36/95 (37%), Gaps = 31/95 (32%)
Query: 517 QRTELGGRVGKGPGAPP-----SALPG-------------PRPRPDSLSPGE-------P 551
Q+ ELG RVG P PP SA+ RP L+ G P
Sbjct: 703 QQAELGQRVGLFPPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGPLALGSPRLVRRPP 762
Query: 552 PGP------PTPPPARALPAAVASARCSLRDPGGG 580
PGP P PPP + P A AS R P GG
Sbjct: 763 PGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGG 797
Score = 31.6 bits (70), Expect = 2.2
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 463 PGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVL----LPELPAVDPARDTRREPDAAAQR 518
P G P+ G P G A+PR R LP P PA RR A+
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPL 820
Query: 519 TELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPA 565
+ P P A PGP S P PTP A P+
Sbjct: 821 S------ASQPSLPHGA-PGPAASTRPASSSTPRLGPTPAARAAAPS 860
Score = 30.0 bits (66), Expect = 6.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 525 VGKGPGAPPSALPGPRPRPDSLSPGEPPGP--PTPPPARALPAA 566
V + P P A P P P + PG P P P P LPAA
Sbjct: 758 VRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAA 801
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 50.4 bits (119), Expect = 4e-06
Identities = 147/638 (23%), Positives = 189/638 (29%), Gaps = 103/638 (16%)
Query: 8 PQPAGSTSTDILYGLCGHLLDAGDEG--GQAGHP-VVGDTGQFERGCARRHRSPRGHRHA 64
P P G+ GL G AG +G G G P G G R P G +
Sbjct: 330 PGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGS 389
Query: 65 V--PGPR-LQRALGGQAWAGRRQLHGFMLYSGQQRD----GHRGGHDVGGRGGGGRLQLV 117
PGP L+ + G + G G M G + G RG + GR G L
Sbjct: 390 AGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGP 449
Query: 118 AGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAGRHGEPAR 177
G G G + +G VG ++ G AG GEP
Sbjct: 450 RGLPG-SPGNIGPAGKEGPVGLPGIDGRPGPIGP-----------------AGARGEPGN 491
Query: 178 VAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEVEAAGGQHRPVGLEGLALDHDGHIAVEA 237
+ G G A A + G P G +G
Sbjct: 492 IGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQG------------- 538
Query: 238 QQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCP 297
VQ + G Q L A +G L G LP A G P
Sbjct: 539 -----VQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGP 593
Query: 298 LRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVS 357
G++ P P R P G +G + P + P L G +
Sbjct: 594 ---PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGP--SGPSGLPGERGAA 648
Query: 358 PQAGARVGEAREAVTTHERAHLDREGE--------------ARARLGQAAAQMRREGWGA 403
G + GE E E + R+G A G+A A G
Sbjct: 649 GIPGGK-GEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGP 707
Query: 404 RAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRG--RGW 461
R G RG G GP + PA GAA + G+R + VG G
Sbjct: 708 RGSPGERGEVGPAGPNGFAGPA-----GAAGQPGAKGERGAKGPKGENGVVGPTGPVGAA 762
Query: 462 GPGAGRVPSG--GRRGVGNPERW------GGEAAAPRPSRVLLPELPAVDPARDTRREPD 513
GP P G G RG G P G P PS + P P ++ R P
Sbjct: 763 GPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGP- 821
Query: 514 AAAQRTELG--GRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTP------PPARALPA 565
R + G GR G+ P G + PPG P P P LP
Sbjct: 822 ----RGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPG 877
Query: 566 A-----VASARCSLRDPG----GGSARIRSRPGRSGGP 594
+ + ++ +PG G R PG G P
Sbjct: 878 SRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP 915
Score = 47.0 bits (110), Expect = 5e-05
Identities = 70/274 (25%), Positives = 91/274 (33%), Gaps = 53/274 (19%)
Query: 347 PQSLAEGLGVSPQAGAR--VGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGAR 404
P+ + +G + GAR VGE A + E + +GE G A Q G
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGN---KGEP----GSAGPQGPPGPSGEE 378
Query: 405 AKLGGRGVCGKCGP----GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
K G G G GP G P R PGA RA + G R + G G
Sbjct: 379 GKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDA 438
Query: 461 WGPG-------------AGRVPSGGRRGV-------GNPERWGGEAAAPRPSRVLL--PE 498
PG G + G+ G G P G A P + P+
Sbjct: 439 GRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPK 498
Query: 499 LPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP 558
P DP ++ + A G R GP A P P+ GE GPP PP
Sbjct: 499 GPTGDPGKNGDKGHAGLA-----GARGAPGPDGNNGAQGPPGPQGVQGGKGE-QGPPGPP 552
Query: 559 PARALPAAVASARCSLRDPGGGSARIRSRPGRSG 592
+ LP P G + + +PG G
Sbjct: 553 GFQGLPG-----------PSGPAGEV-GKPGERG 574
Score = 43.5 bits (101), Expect = 5e-04
Identities = 61/222 (27%), Positives = 70/222 (31%), Gaps = 35/222 (15%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
GA G RG G GP GP PG G+ A G RG
Sbjct: 226 GAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEV 285
Query: 461 WGPG-AGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRT 519
PG +G V G G G + AA P P LP P AA T
Sbjct: 286 GLPGLSGPVGPPGNPGANGLT--GAKGAAGLPGVAGAPGLPGPRGIPG----PVGAAGAT 339
Query: 520 ELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPP------------------GPPTPPPAR 561
G VG+ A G + P S P PP GPP PP R
Sbjct: 340 GARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLR 399
Query: 562 ALPAA----VASARCSLRDPGG-----GSARIRSRPGRSGGP 594
P + A R + P G G A +R G +G P
Sbjct: 400 GSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRP 441
Score = 42.0 bits (97), Expect = 0.002
Identities = 82/338 (24%), Positives = 105/338 (31%), Gaps = 62/338 (18%)
Query: 272 GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAG 331
GS+ G+ P AA G P ++G P P P ++ R P G +G
Sbjct: 775 GSRGDGGPPGMTGFPGAAGRTGPPGPSGISG------PPGPPGPAGKEGLRGPRGDQGPV 828
Query: 332 SRFKRLHDESPRPNF--------------------PQSLAEGLGVSPQAGARVGEAREAV 371
R + P P F PQ L G+ G+R V
Sbjct: 829 GRTGEVGAVGP-PGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGV 887
Query: 372 T--THERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGP----GPWDDPA 425
E L G AR G A GA + G G G GP G
Sbjct: 888 AGAVGEPGPLGIAGPPGAR-GPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKG 946
Query: 426 RRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSG--GRRGVGNPERWG 483
R PG AG + G+RG GP P+G G RG P+
Sbjct: 947 ERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGET-GPSGPVGPAGAVGPRGPSGPQGIR 1005
Query: 484 GEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELG--GRVG----KGPGAP----- 532
G+ P LP + + P A + G G VG +GP P
Sbjct: 1006 GDKGEPGEKGPR--GLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAG 1063
Query: 533 ------------PSALPGPRPRPDSLSPGEPPGPPTPP 558
P+ + GP+ P PPGPP PP
Sbjct: 1064 KDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPP 1101
Score = 37.4 bits (85), Expect = 0.039
Identities = 61/221 (27%), Positives = 69/221 (31%), Gaps = 37/221 (16%)
Query: 355 GVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCG 414
G + AGAR G A E H + G R G Q R G G +G+ G
Sbjct: 124 GQTGPAGAR-GPAGPPGKAGEDGHPGKPGRPGER-GVVGPQGARGFPGTPGLPGFKGIRG 181
Query: 415 KCG----PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPG-AGRVP 469
G G P + PGA GQ R G RGR PG AG
Sbjct: 182 HNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLP------GERGRVGAPGPAGARG 235
Query: 470 SGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGP 529
S G G P G A P P A + E+G GP
Sbjct: 236 SDGSVGPVGPAGPIGSAGPPG--------------------FPGAPGPKGEIGAVGNAGP 275
Query: 530 GAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASA 570
P GPR P GPP P A L A +A
Sbjct: 276 AGPA----GPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAA 312
Score = 35.8 bits (81), Expect = 0.11
Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 462 GPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTEL 521
GP R P G R G P R G + P P P P + L
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPG----PPGPPGPPGLGGNFAAQYDGKGVGL 88
Query: 522 G-GRVG-KGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSLRDPGG 579
G G +G GP PP A P P+ GEP P PA A R P G
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGA------------RGPAG 136
Query: 580 --GSARIRSRPGRSGGP 594
G A PG+ G P
Sbjct: 137 PPGKAGEDGHPGKPGRP 153
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 50.4 bits (119), Expect = 4e-06
Identities = 88/332 (26%), Positives = 106/332 (31%), Gaps = 59/332 (17%)
Query: 286 PSAAAAAGRHCPLRLAGQAPRTQ-PACPAAP-RMQQTEREPWGGEGAGSRFKR----LHD 339
P A G RL Q R P AP + R P + +GS +R L
Sbjct: 37 PPHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRL 96
Query: 340 ESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
SP + P+ P+AG R AV T R R+G R G +R
Sbjct: 97 ASPAGDLPRR------PRPRAGGGRHSPRPAVGTIFRG--GRKGRLREGRGAVRGSGKRR 148
Query: 400 GWG-----ARAKLGGRGVC--GKCGPGPWDDPARRR----NPGAAARAKLAGQRAGRARA 448
GWG R++L G G G P W R PG A L G G
Sbjct: 149 GWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGG---- 204
Query: 449 RTGSQVGSRGRGWGPGAGRVPSGGR------RGVGNPERWGGEAAAPRPSRVLLPELPAV 502
S+ G G P R P GR R +G+ ER G AA R ++ P
Sbjct: 205 ---SEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPH---- 257
Query: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARA 562
AA R GR GA S RP
Sbjct: 258 ------------AAVRNSSRGR-----GAATSVSAAARPTRGGARGHRRADGRARGGCAQ 300
Query: 563 LPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
L A SA L+D G + P RSG P
Sbjct: 301 LRAGTPSAPGGLQDCRGRQGEENAHPFRSGAP 332
Score = 35.8 bits (81), Expect = 0.11
Identities = 78/302 (25%), Positives = 98/302 (32%), Gaps = 62/302 (20%)
Query: 262 RHGGRAAAGL---GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQ 318
RH R A G G ++G G A +G+ L Q R++ A APR
Sbjct: 115 RHSPRPAVGTIFRGGRKGRLREGR----GAVRGSGKRRGWGLRPQRVRSRLAGLGAPRGG 170
Query: 319 QTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARV----GEAREAVTTH 374
WGG+GA +RL P +L G G S G AR+ +
Sbjct: 171 AAAPRGWGGQGA----ERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRARQPPSGR 226
Query: 375 ERAHLDR-EGEARARLGQAA----AQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRN 429
R R G A G+AA Q+ R R GRG +
Sbjct: 227 PRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA--------------TS 272
Query: 430 PGAAARAKLAGQRAGR---ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERW-GGE 485
AAAR G R R RAR G G PG G GR+G N + G
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPG-GLQDCRGRQGEENAHPFRSGA 331
Query: 486 AAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDS 545
+P P A R+ L ++ P PP P P P
Sbjct: 332 PFSPHPH-----------------------ASRSTLAAQLLPLPQPPPPPKLAPPPLPPW 368
Query: 546 LS 547
LS
Sbjct: 369 LS 370
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 50.4 bits (119), Expect = 4e-06
Identities = 71/241 (29%), Positives = 89/241 (36%), Gaps = 47/241 (19%)
Query: 378 HLDREGEARARLGQAAAQMRREG--WGARAKLGGRGVCGKCGP----------------- 418
H D++ + RA + Q +++R+G W + LG G P
Sbjct: 13 HSDKDRDFRAVVPQVN-ELQRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGA 71
Query: 419 -GPWDDPARRRNPGAAARA-KLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGG--RR 474
GP PAR G ARA + AG+RAG A G + GRG R P+ G R
Sbjct: 72 GGPLCFPARSAAWGPPARASRAAGRRAGPA----GPPCRAPGRGRAAATRRSPAPGTARG 127
Query: 475 GVGNPERWGGEAAAPR------PSRVLLPELPAVD---PARDTRREPDAAAQRTELGGR- 524
ER GG AA P+R L P +R RR AA R+ R
Sbjct: 128 SPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRR 187
Query: 525 --VGKGPGAPPSALPGPRPRPDSLSPGEPPG-----PPTPPPARALPAAVASARCSLRDP 577
GPGAP PG P + PP P PP PAA + DP
Sbjct: 188 WAAMPGPGAPRPGAPG--TWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 245
Query: 578 G 578
G
Sbjct: 246 G 246
Score = 33.1 bits (74), Expect = 0.74
Identities = 58/211 (27%), Positives = 68/211 (32%), Gaps = 22/211 (10%)
Query: 268 AAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGG 327
AA GSQ G + P+ +AA G P R + A R A PA P R P G
Sbjct: 60 AASAGSQEHPGAGGPLCFPARSAAWGP--PARASRAAGRR--AGPAGPPC----RAPGRG 111
Query: 328 EGAGSRFKRLHDESPRPNFPQSL------AEGLGVSPQAGARVGEAREAVTTHERAHLDR 381
A +R SP P + A G + AG R AR L
Sbjct: 112 RAAATR------RSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGA 165
Query: 382 EGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAAR--AKLA 439
A R G AA A + G G PG W P AAA A
Sbjct: 166 GSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPP 225
Query: 440 GQRAGRARARTGSQVGSRGRGWGPGAGRVPS 470
AG A V + G PG P+
Sbjct: 226 PAVAGAPAAAFRGWVAAPDPGCTPGTENAPA 256
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 50.4 bits (119), Expect = 4e-06
Identities = 79/297 (26%), Positives = 105/297 (35%), Gaps = 74/297 (24%)
Query: 298 LRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAE-GLGV 356
LR P PA P+ R P G R RP P +L E GL V
Sbjct: 3 LRPRRPPPLAPPAPPSPASPDPEPRTPGDAPGTPPR---------RPASPSALGELGLPV 53
Query: 357 SPQAGARVG------------------------EAREAVTTHERAHLDREGEARARLGQA 392
SP + R + R+A+ T+ R A+ ++ +
Sbjct: 54 SPGSAQRTPWSARETELLLGTLLQPAVWRALLLDRRQALPTYRRVSA---ALAQQQVRRT 110
Query: 393 AAQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGS 452
AQ RR + K R G+ PGP+D+ R KL G R R
Sbjct: 111 PAQCRRRYKFLKDKF--REAHGQ-PPGPFDEQIR----------KLMGLLGDNGRKRP-- 155
Query: 453 QVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREP 512
R PG+GR P RR V N A AP PS P+ + ARD +P
Sbjct: 156 ------RRRSPGSGR-PQRARRPVPN-------AHAPAPSE---PDATPLPTARDRDADP 198
Query: 513 DAAAQRTELGGR---VGKGPGAPPSALPGPRPR--PDSLSPGEPPGPPTPPPARALP 564
+ + + PG+PP+ P P+ +P PG P PPPAR P
Sbjct: 199 TWTLRFSPSPPKSADASPAPGSPPAPAPTALATCIPEDRAPVRGPGSPPPPPAREDP 255
Score = 34.7 bits (78), Expect = 0.25
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 529 PGAPPS-ALPGPRPRPDSLSPGEPPGPPTPPPA---RALPAAVASAR 571
P APPS A P P PR +PG PP P P A LP + SA+
Sbjct: 13 PPAPPSPASPDPEPRTPGDAPGTPPRRPASPSALGELGLPVSPGSAQ 59
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 50.1 bits (118), Expect = 6e-06
Identities = 88/332 (26%), Positives = 106/332 (31%), Gaps = 59/332 (17%)
Query: 286 PSAAAAAGRHCPLRLAGQAPRTQ-PACPAAP-RMQQTEREPWGGEGAGSRFKR----LHD 339
P A G RL Q R P AP + R P + +GS +R L
Sbjct: 37 PPHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRL 96
Query: 340 ESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
SP + P+ P+AG R AV T R R+G R G +R
Sbjct: 97 ASPAGDLPRR------PRPRAGGGRHSPRPAVGTIFRG--GRKGRLREGRGALRGSGKRR 148
Query: 400 GWG-----ARAKLGGRGVC--GKCGPGPWDDPARRR----NPGAAARAKLAGQRAGRARA 448
GWG R++L G G G P W R PG A L G G
Sbjct: 149 GWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGG---- 204
Query: 449 RTGSQVGSRGRGWGPGAGRVPSGGR------RGVGNPERWGGEAAAPRPSRVLLPELPAV 502
S+ G G P R P GR R +G+ ER G AA R ++ P
Sbjct: 205 ---SEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPH---- 257
Query: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARA 562
AA R GR GA S RP
Sbjct: 258 ------------AAVRNSSRGR-----GAATSVSAAARPTRGGARGHRRADGRARGGCAQ 300
Query: 563 LPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
L A SA L+D G + P RSG P
Sbjct: 301 LRAGTPSAPGGLQDCRGRQGEENAHPFRSGAP 332
Score = 35.4 bits (80), Expect = 0.15
Identities = 78/302 (25%), Positives = 98/302 (32%), Gaps = 62/302 (20%)
Query: 262 RHGGRAAAGL---GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQ 318
RH R A G G ++G G A +G+ L Q R++ A APR
Sbjct: 115 RHSPRPAVGTIFRGGRKGRLREGR----GALRGSGKRRGWGLRPQRVRSRLAGLGAPRGG 170
Query: 319 QTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARV----GEAREAVTTH 374
WGG+GA +RL P +L G G S G AR+ +
Sbjct: 171 AAAPRGWGGQGA----ERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRARQPPSGR 226
Query: 375 ERAHLDR-EGEARARLGQAA----AQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRN 429
R R G A G+AA Q+ R R GRG +
Sbjct: 227 PRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA--------------TS 272
Query: 430 PGAAARAKLAGQRAGR---ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERW-GGE 485
AAAR G R R RAR G G PG G GR+G N + G
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPG-GLQDCRGRQGEENAHPFRSGA 331
Query: 486 AAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDS 545
+P P A R+ L ++ P PP P P P
Sbjct: 332 PFSPHPH-----------------------ASRSTLAAQLLPLPQPPPPPKLAPPPLPPW 368
Query: 546 LS 547
LS
Sbjct: 369 LS 370
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 50.1 bits (118), Expect = 6e-06
Identities = 88/332 (26%), Positives = 106/332 (31%), Gaps = 59/332 (17%)
Query: 286 PSAAAAAGRHCPLRLAGQAPRTQ-PACPAAP-RMQQTEREPWGGEGAGSRFKR----LHD 339
P A G RL Q R P AP + R P + +GS +R L
Sbjct: 37 PPHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRL 96
Query: 340 ESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARLGQAAAQMRRE 399
SP + P+ P+AG R AV T R R+G R G +R
Sbjct: 97 ASPAGDLPRR------PRPRAGGGRHSPRPAVGTIFRG--GRKGRLREGRGALRGSGKRR 148
Query: 400 GWG-----ARAKLGGRGVC--GKCGPGPWDDPARRR----NPGAAARAKLAGQRAGRARA 448
GWG R++L G G G P W R PG A L G G
Sbjct: 149 GWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGG---- 204
Query: 449 RTGSQVGSRGRGWGPGAGRVPSGGR------RGVGNPERWGGEAAAPRPSRVLLPELPAV 502
S+ G G P R P GR R +G+ ER G AA R ++ P
Sbjct: 205 ---SEGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPH---- 257
Query: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARA 562
AA R GR GA S RP
Sbjct: 258 ------------AAVRNSSRGR-----GAATSVSAAARPTRGGARGHRRADGRARGGCAQ 300
Query: 563 LPAAVASARCSLRDPGGGSARIRSRPGRSGGP 594
L A SA L+D G + P RSG P
Sbjct: 301 LRAGTPSAPGGLQDCRGRQGEENAHPFRSGAP 332
Score = 35.4 bits (80), Expect = 0.15
Identities = 78/302 (25%), Positives = 98/302 (32%), Gaps = 62/302 (20%)
Query: 262 RHGGRAAAGL---GSQRGAALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQ 318
RH R A G G ++G G A +G+ L Q R++ A APR
Sbjct: 115 RHSPRPAVGTIFRGGRKGRLREGR----GALRGSGKRRGWGLRPQRVRSRLAGLGAPRGG 170
Query: 319 QTEREPWGGEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARV----GEAREAVTTH 374
WGG+GA +RL P +L G G S G AR+ +
Sbjct: 171 AAAPRGWGGQGA----ERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRARQPPSGR 226
Query: 375 ERAHLDR-EGEARARLGQAA----AQMRREGWGARAKLGGRGVCGKCGPGPWDDPARRRN 429
R R G A G+AA Q+ R R GRG +
Sbjct: 227 PRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAA--------------TS 272
Query: 430 PGAAARAKLAGQRAGR---ARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERW-GGE 485
AAAR G R R RAR G G PG G GR+G N + G
Sbjct: 273 VSAAARPTRGGARGHRRADGRARGGCAQLRAGTPSAPG-GLQDCRGRQGEENAHPFRSGA 331
Query: 486 AAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDS 545
+P P A R+ L ++ P PP P P P
Sbjct: 332 PFSPHPH-----------------------ASRSTLAAQLLPLPQPPPPPKLAPPPLPPW 368
Query: 546 LS 547
LS
Sbjct: 369 LS 370
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 49.7 bits (117), Expect = 8e-06
Identities = 158/626 (25%), Positives = 204/626 (32%), Gaps = 94/626 (15%)
Query: 5 PRRPQPAGSTSTDILYG------LCGHLLDAGDEGGQAGHPVVGDTGQ-FERGCARRHRS 57
P P P GST + G + G +AG +G H + G G E G R
Sbjct: 449 PGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEG----KRG 504
Query: 58 PRGHRHAV--PGPRLQR-ALGGQAWAGRRQLHGFMLYSGQQ----RDGHRGGHDVGGRGG 110
PRG V PGP +R A G + + G L G G++ G +G GR G
Sbjct: 505 PRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPG 564
Query: 111 GGRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLAG 170
L G G GV G +G + G + Q G
Sbjct: 565 EPGLPGARGLTG-NPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGP--KG 621
Query: 171 RHGEPARVAEGQDLLEAGGRHGAGQLEGALA----VAAEQVAEVEAAGGQHRPVGLEGLA 226
G+P + E + G+ GA +G + V +A G P G +GL
Sbjct: 622 SSGDPGKPGEAGNA-GVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLP 680
Query: 227 LDHDGHIAVEAQQALLVQAAQHCVP----EVGDLDVQHLRHGGRAAAGLGSQRGAALAGL 282
G + + VP VG L G R G +RG G+
Sbjct: 681 ----GPPGPPGEGG---KPGDQGVPGDPGAVGPL-------GPRGERGNPGERGEP--GI 724
Query: 283 IYLPSAAAAAGRHCPLRLAGQ-APRTQPACPAAPRMQQTEREPWGGEGAGSRFKRLHDES 341
LP AG H P G P P P +Q E G +
Sbjct: 725 TGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPK-------G 777
Query: 342 PRPNFPQSLAEGLGVSPQAGAR-----VGEAREAVTTHERAHLDREGEARARLGQAAAQM 396
R + AEG + GAR +G A T E+ GE R G
Sbjct: 778 DRGGIGEKGAEG--TAGNDGARGLPGPLGPPGPAGPTGEK------GEPGPR-GLVGPPG 828
Query: 397 RREGWGARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVG 455
R G+R + G G G GP GP P + PG + AG + A G
Sbjct: 829 SRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLA---GSPG 885
Query: 456 SRGRGWGPGAGRVPSGGRRGVGNPERWG-----GEAAAPRPSRVLLPELPAVDPARDTRR 510
G PG GGR G P G G P P+ P P +P ++
Sbjct: 886 PHGPNGVPGL----KGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEG-- 939
Query: 511 EPDAAAQRTELGGRVG-KGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVAS 569
P GRVG +GP PP PG + P P GPP PA
Sbjct: 940 -PPGLRGDPGSHGRVGDRGPAGPPGG-PGDKGDPGEDGQPGPDGPPG-------PAGTTG 990
Query: 570 ARCSLRDPG-GGSARIRSRPGRSGGP 594
R + PG G + PG +G P
Sbjct: 991 QRGIVGMPGQRGERGMPGLPGPAGTP 1016
Score = 43.9 bits (102), Expect = 4e-04
Identities = 46/173 (26%), Positives = 55/173 (31%), Gaps = 17/173 (9%)
Query: 402 GARAKLGGRGVCGKCG-PGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
G+ ++G RG G G PG DP PG AG R Q G RG
Sbjct: 948 GSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMP 1007
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
PG P G P G+ P P P +P + D R
Sbjct: 1008 GLPGPAGTP-----GKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDG 1062
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGP-----------PTPPPARA 562
G G P+ LPG + P + P PG P PP RA
Sbjct: 1063 AVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRA 1115
Score = 42.7 bits (99), Expect = 0.001
Identities = 62/221 (28%), Positives = 73/221 (33%), Gaps = 33/221 (14%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRA-------RARTG-- 451
GA + G G+ GK GP GP P PG AG R R TG
Sbjct: 351 GAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPP 410
Query: 452 SQVGSRGRGWGPGAGRVPSG----GRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARD 507
VGS G G P G G P G +P P P+ P
Sbjct: 411 GPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPG-- 468
Query: 508 TRREPDAAAQRTELG--GRVG----KGPGAPPS--ALPGPRPRPDSLSPGEPPGPPTPPP 559
+P + E G G G +GP PP GPR P ++ P P G P
Sbjct: 469 ---DPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPG 525
Query: 560 ARALPAAVA----SARCSLRDPGGGSARIRSR--PGRSGGP 594
R P + R P G S S+ PGR G P
Sbjct: 526 NRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEP 566
Score = 42.4 bits (98), Expect = 0.001
Identities = 92/365 (25%), Positives = 116/365 (31%), Gaps = 57/365 (15%)
Query: 264 GGRAAAGLGSQRGAALAGLIYLPSAAAAAGRHCPLRLAG-QAPRTQ--PACPAAPRMQQ- 319
GG G G + GL+ P GR P G Q PR + P PR Q
Sbjct: 102 GGNTNFGRGRKGQKGEPGLV--PVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQG 159
Query: 320 TEREPWGGEGAGSRFKRLHDESPRPN-----FPQSLA---EGLGVSPQAGARVGEAREAV 371
+ EP G+ H P P+ F +A E G+ Q G G
Sbjct: 160 IDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVG 219
Query: 372 TTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCG-PGPWDDPARRRNP 430
+ ++G A G G +G RG G G PG +P R NP
Sbjct: 220 PRGPQGLQGQQGGA----GPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNP 275
Query: 431 GAAARAKLAGQRAGRARARTGSQVGSRG-RGWGPGAGRVPSGGRRGVGNPERWGGEAAAP 489
G A G R G RG +G G V + G +G EA
Sbjct: 276 GEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKG---------EAGPT 326
Query: 490 RPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPG 549
P + P P P R P A + G GK P +PG P +PG
Sbjct: 327 GPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPG--NPG 384
Query: 550 -------------EPP-------GPPTPPPARALPAAVASARCSLRDPGGGSARIRSRPG 589
E P GPP P + LP A+ + D G+ PG
Sbjct: 385 MKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGT------DGTPGAKGPTGSPG 438
Query: 590 RSGGP 594
SG P
Sbjct: 439 TSGPP 443
Score = 40.0 bits (92), Expect = 0.006
Identities = 54/200 (27%), Positives = 64/200 (32%), Gaps = 24/200 (12%)
Query: 402 GARAKLGGRGVCGKCGP-GPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGRG 460
G+ ++G G G GP GP +P + PG L G R VG RG
Sbjct: 912 GSAGRVGPPGPAGAPGPAGPLGEPGKEGPPG------LRGDPGSHGR------VGDRGPA 959
Query: 461 WGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRTE 520
GP G G G P G A + + +P R P A +
Sbjct: 960 -GPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGK 1018
Query: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPA--AVASARCSLRDPG 578
+G G PP GP P S P PGP P P R DPG
Sbjct: 1019 VGPTGATGDKGPP----GPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPG 1074
Query: 579 ----GGSARIRSRPGRSGGP 594
GS PG G P
Sbjct: 1075 PAGLPGSQGAPGTPGPVGAP 1094
Score = 36.2 bits (82), Expect = 0.087
Identities = 100/419 (23%), Positives = 123/419 (29%), Gaps = 77/419 (18%)
Query: 215 GQHRPVGLEGLALDH--DGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLG 272
G++ P G G A DG V+ + Q P L HG GL
Sbjct: 837 GENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLK 896
Query: 273 SQRGA-ALAGLIYLPSAAAAAGRHCPLRLAGQAPRTQPACPAAPRMQQTEREPWGGEGAG 331
RG G P +A G P G PA P + + P G G
Sbjct: 897 GGRGTQGPPGATGFPGSAGRVGPPGPAGAPG---------PAGPLGEPGKEGPPGLRGDP 947
Query: 332 SRFKRLHDESPR--PNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEARARL 389
R+ D P P P + G Q G G A TT +R + G+
Sbjct: 948 GSHGRVGDRGPAGPPGGPGDKGDP-GEDGQPGPD-GPPGPAGTTGQRGIVGMPGQR---- 1001
Query: 390 GQAAAQMRREGWGARAKLGGRGVCGKCGP----------GPWDDPARRR---NPGAAARA 436
G+ G K+G G G GP GP +P N G R
Sbjct: 1002 GERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRD 1061
Query: 437 KLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPS-GGRRGVGNPERWGGEAAAPRPSRVL 495
G+R R GS+G PG P G+RG +P G P R
Sbjct: 1062 GAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRG--DP---GSRGPIGPPGRAG 1116
Query: 496 LPELPAVDPARDTRREPDAAAQRTELGGRVGKG----PGAP----------------PSA 535
LP R + + R + G R G PG P P
Sbjct: 1117 KRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRG 1176
Query: 536 LPGP------RPRPDSLSP----------GE--PPGPPTPPPARALPAAVASARCSLRD 576
PGP P L P GE P GPP P P +L D
Sbjct: 1177 PPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGD 1235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,598,304
Number of Sequences: 37866
Number of extensions: 2069986
Number of successful extensions: 28913
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 1653
Number of HSP's that attempted gapping in prelim test: 15378
Number of HSP's gapped (non-prelim): 9884
length of query: 594
length of database: 18,247,518
effective HSP length: 108
effective length of query: 486
effective length of database: 14,157,990
effective search space: 6880783140
effective search space used: 6880783140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.