Search of human proteins with 239748155

Search of human proteins with 239748155

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo
sapiens]
         (43 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]            94   2e-20
gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo ...    94   2e-20
gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo ...    94   2e-20

>gi|239753510 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 284

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1   MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43
           MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 242 MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 284


>gi|239748155 PREDICTED: hypothetical protein XP_002346540 [Homo
          sapiens]
          Length = 43

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43
          MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 1  MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43


>gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo
           sapiens]
          Length = 311

 Score = 94.0 bits (232), Expect = 2e-20
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1   MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 43
           MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP
Sbjct: 269 MSMMVLGLSRRKTMGHANLGGIKATWACQKSQSQSPPPGRHRP 311


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.128    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,027,370
Number of Sequences: 37866
Number of extensions: 50420
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 3
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.