Guide to the Human Genome
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Name: LOC100290148 Sequence: fasta or formatted (152aa) NCBI GI: 239747987
Description:

PREDICTED: hypothetical protein XP_002346490

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         15           1
 C cysteine            2.6          4           1
 D aspartate           2.6          4           1
 E glutamate           5.3          8           2
 F phenylalanine       3.3          5           1
 G glycine            13.8         21           2
 H histidine           2.6          4           1
 I isoleucine          3.3          5           1
 K lysine              3.3          5           1
 L leucine             8.6         13           2
 M methionine          2.6          4           1
 N asparagine          1.3          2           1
 P proline             7.2         11           3
 Q glutamine           0.7          1           1
 R arginine            9.2         14           3
 S serine             11.8         18           2
 T threonine           3.3          5           1
 V valine              5.9          9           2
 W tryptophan          2.6          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346490 
LOC100292995          1.000   PREDICTED: hypothetical protein 
LOC284988             0.034   PREDICTED: hypothetical protein 
LBXCOR1               0.034   LBXCOR1 homolog 
CCDC9                 0.034   coiled-coil domain containing 9 
FAM20C                0.034   family with sequence similarity 20, member C 
LOC100130128          0.031   PREDICTED: hypothetical protein 
LOC100130128          0.031   PREDICTED: hypothetical protein 
LOC100130128          0.031   PREDICTED: hypothetical protein 
LOC100129098          0.031   PREDICTED: hypothetical protein 
LOC100129098          0.031   PREDICTED: hypothetical protein 
LOC100129098          0.031   PREDICTED: hypothetical protein 
ZNF469                0.031   zinc finger protein 469 
LOC284801             0.028   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.028   PREDICTED: hypothetical protein LOC284801 
LOC100290263          0.028   PREDICTED: hypothetical protein XP_002347916 
LOC284801             0.028   PREDICTED: hypothetical protein LOC284801 
PPP1R10               0.024   protein phosphatase 1, regulatory subunit 10 
LOC100288382          0.024   PREDICTED: hypothetical protein XP_002342213 
LOC100293375          0.024   PREDICTED: hypothetical protein 
LOC728431             0.024   PREDICTED: hypothetical protein 
LOC100129781          0.024   PREDICTED: hypothetical protein 
C10orf95              0.024   hypothetical protein LOC79946 
LOC100292934          0.024   PREDICTED: hypothetical protein 
LOC100288030          0.024   PREDICTED: hypothetical protein XP_002343812 
LOC100287104          0.024   PREDICTED: hypothetical protein XP_002343630 
RBMXL2                0.024   testes-specific heterogenous nuclear ribonucleoprot...
GAR1                  0.021   nucleolar protein family A, member 1 
GAR1                  0.021   nucleolar protein family A, member 1 
SPN                   0.021   sialophorin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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