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Search of human proteins with 239747878
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747878 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747878 PREDICTED: hypothetical protein isoform 2 [Homo sap... 318 1e-87
gi|239747880 PREDICTED: hypothetical protein isoform 1 [Homo sap... 174 3e-44
gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens] 140 3e-34
gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens] 91 4e-19
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 28 2.8
gi|215490102 spinster homolog 1 isoform 3 [Homo sapiens] 27 4.8
gi|215490100 spinster homolog 1 isoform 2 [Homo sapiens] 27 4.8
gi|215490098 spinster homolog 1 isoform 4 [Homo sapiens] 27 4.8
gi|215490096 spinster homolog 1 isoform 1 [Homo sapiens] 27 4.8
gi|14042968 spinster homolog 1 isoform 1 [Homo sapiens] 27 4.8
gi|94967014 olfactory receptor, family 4, subfamily A, member 5 ... 27 6.2
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 27 8.2
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 27 8.2
>gi|239747878 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 148
Score = 318 bits (814), Expect = 1e-87
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MAVGDLIPIPGDTAVNLPLAVGWCVCCSSQVPKSVLVYHCTSGNLNPCNRGKMGFQVLAT 60
MAVGDLIPIPGDTAVNLPLAVGWCVCCSSQVPKSVLVYHCTSGNLNPCNRGKMGFQVLAT
Sbjct: 1 MAVGDLIPIPGDTAVNLPLAVGWCVCCSSQVPKSVLVYHCTSGNLNPCNRGKMGFQVLAT 60
Query: 61 FEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPRQGQDGSKS 120
FEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPRQGQDGSKS
Sbjct: 61 FEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPRQGQDGSKS 120
Query: 121 NQPPLQPATSCWQDLFLHPVKSQGGTRA 148
NQPPLQPATSCWQDLFLHPVKSQGGTRA
Sbjct: 121 NQPPLQPATSCWQDLFLHPVKSQGGTRA 148
>gi|239747880 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 113
Score = 174 bits (440), Expect = 3e-44
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 32 PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI 91
PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI
Sbjct: 15 PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI 74
Query: 92 SQQAPAIIYDFYLWLTGRKP 111
SQQAPAIIYDFYLWLTGRKP
Sbjct: 75 SQQAPAIIYDFYLWLTGRKP 94
>gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]
Length = 515
Score = 140 bits (354), Expect = 3e-34
Identities = 74/112 (66%), Positives = 84/112 (75%), Gaps = 5/112 (4%)
Query: 1 MAVGDLIPIPGDTAVNLPLAVGWCVCCSSQVPKSVLVYHCTSGNLNPCNRGKMGFQVLAT 60
MAV D+IP+ DT VNL LAVGW PKS LVYH TSGN+NPCN KMG QVLAT
Sbjct: 270 MAVADVIPV--DTVVNLMLAVGWYTAVHR--PKSTLVYHITSGNMNPCNWHKMGVQVLAT 325
Query: 61 FEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPR 112
FE IPFER RP A+FT+++F +QYWNA+S +APAIIYD YL LTGRKPR
Sbjct: 326 FE-KIPFERPFRRPNANFTSNSFTSQYWNAVSHRAPAIIYDCYLRLTGRKPR 376
>gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]
Length = 515
Score = 90.9 bits (224), Expect = 4e-19
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 2 AVGDLIPIPGDTAVNLPLAVGWCVCCSSQVPKSVLVYHCTSGNLNPCNRGKMGFQVLATF 61
A+ DL+P+ D VN+ LA W + P++++VY+CT+G+ NP + G++ + V++TF
Sbjct: 271 ALADLVPV--DVVVNMSLAAAWYSGVNR--PRNIMVYNCTTGSTNPFHWGEVEYHVISTF 326
Query: 62 EIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPR 112
+ P E+A RP + T+++ YW A+S +APA +YD YL +TGR PR
Sbjct: 327 KRN-PLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDIYLRMTGRSPR 376
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 28.1 bits (61), Expect = 2.8
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 109 RKPRQG-QDGSKSNQPPLQPATSCW 132
RKPR G QDG + +QPP PA+ W
Sbjct: 1178 RKPRPGQQDGKEGSQPP--PASGYW 1200
>gi|215490102 spinster homolog 1 isoform 3 [Homo sapiens]
Length = 476
Score = 27.3 bits (59), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 LWLTGRKPRQGQDGSKSNQPPLQPATSCWQDL 135
L+L R+P +G S+ PPL P TS W DL
Sbjct: 234 LFLVVREPPRGAVERHSDLPPLNP-TSWWADL 264
>gi|215490100 spinster homolog 1 isoform 2 [Homo sapiens]
Length = 455
Score = 27.3 bits (59), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 LWLTGRKPRQGQDGSKSNQPPLQPATSCWQDL 135
L+L R+P +G S+ PPL P TS W DL
Sbjct: 161 LFLVVREPPRGAVERHSDLPPLNP-TSWWADL 191
>gi|215490098 spinster homolog 1 isoform 4 [Homo sapiens]
Length = 454
Score = 27.3 bits (59), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 LWLTGRKPRQGQDGSKSNQPPLQPATSCWQDL 135
L+L R+P +G S+ PPL P TS W DL
Sbjct: 212 LFLVVREPPRGAVERHSDLPPLNP-TSWWADL 242
>gi|215490096 spinster homolog 1 isoform 1 [Homo sapiens]
Length = 528
Score = 27.3 bits (59), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 LWLTGRKPRQGQDGSKSNQPPLQPATSCWQDL 135
L+L R+P +G S+ PPL P TS W DL
Sbjct: 234 LFLVVREPPRGAVERHSDLPPLNP-TSWWADL 264
>gi|14042968 spinster homolog 1 isoform 1 [Homo sapiens]
Length = 528
Score = 27.3 bits (59), Expect = 4.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 104 LWLTGRKPRQGQDGSKSNQPPLQPATSCWQDL 135
L+L R+P +G S+ PPL P TS W DL
Sbjct: 234 LFLVVREPPRGAVERHSDLPPLNP-TSWWADL 264
>gi|94967014 olfactory receptor, family 4, subfamily A, member 5
[Homo sapiens]
Length = 315
Score = 26.9 bits (58), Expect = 6.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 45 LNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIY 100
L+ C+ G V+ F +P F RP ++F T F T ++ I+ +IY
Sbjct: 234 LSTCSSGST---VVVLFFVPCIF--IYVRPVSNFPTDKFMTVFYTIITHMLSPLIY 284
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 26.6 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 108 GRKPRQGQDGSKSNQPPLQPATSCWQD 134
GR P D + PPL CW+D
Sbjct: 147 GRLPGDDDDNDEEQPPPLPLTGRCWRD 173
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 26.6 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 108 GRKPRQGQDGSKSNQPPLQPATSCWQD 134
GR P D + PPL CW+D
Sbjct: 147 GRLPGDDDDNDEEQPPPLPLTGRCWRD 173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,463,182
Number of Sequences: 37866
Number of extensions: 286255
Number of successful extensions: 557
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.