Guide to the Human Genome
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Name: LOC100287534 Sequence: fasta or formatted (173aa) NCBI GI: 239747104
Description:

PREDICTED: hypothetical protein XP_002344494

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         12           1
 C cysteine            4.0          7           1
 D aspartate           1.7          3           1
 E glutamate           1.7          3           1
 F phenylalanine       4.6          8           2
 G glycine             6.9         12           2
 H histidine           4.0          7           1
 I isoleucine          3.5          6           2
 K lysine              1.7          3           2
 L leucine             5.8         10           1
 M methionine          2.3          4           1
 N asparagine          2.9          5           1
 P proline            11.0         19           1
 Q glutamine           2.3          4           1
 R arginine            6.4         11           2
 S serine             12.7         22           2
 T threonine           6.9         12           2
 V valine              9.8         17           3
 W tryptophan          2.9          5           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344494 
KIR2DL4               0.696   killer cell immunoglobulin-like receptor, two domai...
KIR2DL4               0.696   killer cell immunoglobulin-like receptor, two domai...
KIR2DL4               0.696   killer cell immunoglobulin-like receptor, two domai...
KIR2DL5B              0.504   killer cell immunoglobulin-like receptor, two domain...
KIR2DL5A              0.504   killer cell immunoglobulin-like receptor, two domain...
KIR3DL3               0.464   killer cell immunoglobulin-like receptor, three doma...
KIR3DP1               0.452   killer-cell Ig-like receptor 
KIR3DL2               0.426   killer cell immunoglobulin-like receptor, three dom...
KIR3DL1               0.426   killer cell immunoglobulin-like receptor, three dom...
KIR3DS1               0.417   killer cell immunoglobulin-like receptor, three dom...
KIR2DL3               0.171   killer cell immunoglobulin-like receptor, two domain...
GP6                   0.171   glycoprotein VI (platelet) isoform 1 
GP6                   0.171   glycoprotein VI (platelet) isoform 2 
KIR2DS4               0.165   killer cell immunoglobulin-like receptor, two domai...
KIR2DL2               0.162   killer cell immunoglobulin-like receptor, two domai...
KIR2DS2               0.162   killer cell immunoglobulin-like receptor, two domains...
KIR2DL3               0.157   killer cell immunoglobulin-like receptor, two domain...
KIR2DS3               0.154   killer cell immunoglobulin-like receptor, two domains...
KIR2DS1               0.151   killer cell immunoglobulin-like receptor, two domains...
KIR2DS5               0.151   killer cell immunoglobulin-like receptor, two domai...
LILRB3                0.145   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.145   leukocyte immunoglobulin-like receptor, subfamily B...
KIR2DL1               0.142   killer cell immunoglobulin-like receptor, two domai...
LILRA6                0.136   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.128   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.128   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRA5                0.116   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.116   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB2                0.116   leukocyte immunoglobulin-like receptor, subfamily B...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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