Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288293 Sequence: fasta or formatted (155aa) NCBI GI: 239747054
Description:

PREDICTED: hypothetical protein XP_002344264

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          3           1
 C cysteine            3.9          6           1
 D aspartate           0.6          1           1
 E glutamate          13.5         21           2
 F phenylalanine       0.0          0           0
 G glycine            11.0         17           1
 H histidine           0.6          1           1
 I isoleucine          2.6          4           1
 K lysine              8.4         13           2
 L leucine             3.9          6           1
 M methionine         11.6         18           1
 N asparagine         13.5         21           1
 P proline             2.6          4           1
 Q glutamine           0.6          1           1
 R arginine            5.8          9           1
 S serine              4.5          7           1
 T threonine           4.5          7           1
 V valine              4.5          7           1
 W tryptophan          3.9          6           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344264 
LOC100288363          0.827   PREDICTED: hypothetical protein XP_002344266 
LOC100288595          0.792   PREDICTED: hypothetical protein XP_002344273 
LOC100288561          0.792   PREDICTED: hypothetical protein XP_002344272 
LOC100288259          0.792   PREDICTED: hypothetical protein XP_002344263 
LOC100288085          0.792   PREDICTED: hypothetical protein XP_002344258 
LOC100288435          0.782   PREDICTED: hypothetical protein XP_002344268 
LOC100288499          0.141   PREDICTED: hypothetical protein XP_002344270 
LOC100288526          0.135   PREDICTED: hypothetical protein XP_002344271 
LOC100288329          0.135   PREDICTED: hypothetical protein XP_002344265 
LOC100288188          0.135   PREDICTED: hypothetical protein XP_002344261 
LOC100288124          0.135   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.135   PREDICTED: hypothetical protein XP_002344256 
LOC100288402          0.131   PREDICTED: hypothetical protein XP_002344267 
LOC100288157          0.131   PREDICTED: hypothetical protein XP_002344260 
LOC100288468          0.128   PREDICTED: hypothetical protein XP_002344269 
LOC100288220          0.128   PREDICTED: hypothetical protein XP_002344262 
LOC100288053          0.128   PREDICTED: hypothetical protein XP_002344257 
CSTF2                 0.067   cleavage stimulation factor subunit 2 
CSTF2T                0.051   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
LARP1B                0.035   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.035   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.035   La ribonucleoprotein domain family member 2 isoform ...
ADAMTS6               0.022   ADAM metallopeptidase with thrombospondin type 1 mot...
FAM113B               0.019   hypothetical protein LOC91523 
LOC100290395          0.016   PREDICTED: hypothetical protein XP_002346998 
LOC642424             0.016   PREDICTED: similar to hCG1742442 
QRICH2                0.013   glutamine rich 2 
MIOS                  0.013   missing oocyte, meiosis regulator, homolog 
ENAH                  0.010   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press