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Search of human proteins with 116875840
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens] 614 e-176
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens] 614 e-176
gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo ... 39 0.006
gi|33286444 mastermind-like 2 [Homo sapiens] 39 0.008
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa... 39 0.008
gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens] 38 0.010
gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens] 38 0.010
gi|150417971 supervillin isoform 1 [Homo sapiens] 38 0.010
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 38 0.010
gi|4503381 down-regulator of transcription 1 [Homo sapiens] 38 0.013
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193794828 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
gi|193788526 calcium channel, voltage-dependent, L type, alpha 1... 37 0.017
>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 614 bits (1584), Expect = e-176
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ
Sbjct: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
Query: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR
Sbjct: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
Query: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF
Sbjct: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
Query: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV
Sbjct: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
Query: 301 YTSLQWASLQ 310
YTSLQWASLQ
Sbjct: 301 YTSLQWASLQ 310
>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 614 bits (1584), Expect = e-176
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1 MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
Query: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ
Sbjct: 61 AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
Query: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR
Sbjct: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
Query: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF
Sbjct: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
Query: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV
Sbjct: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
Query: 301 YTSLQWASLQ 310
YTSLQWASLQ
Sbjct: 301 YTSLQWASLQ 310
>gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo
sapiens]
Length = 142
Score = 38.9 bits (89), Expect = 0.006
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 30 GRTVGALPRGPRQNSRLGLPLLLMPEEARL-LAEIGAVTLVSAPRPDSRHHSLALTSFKR 88
G + G +N R+ L P R LA + T P + HS+A TS ++
Sbjct: 5 GHSRGFSSASSPENDRILLSTFPYPHSKRENLAGLTNSTSSVKEEPPTLRHSMAGTSARK 64
Query: 89 QQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKED 148
Q +E+ + RE +R+E EK EG+ +K++ ++ +E + +E+
Sbjct: 65 SQR---REEKRREEKRREEKRRE--EKRREGKRREKEEEKEEEEEEEEEEEEEEEEEEEE 119
Query: 149 ETSDGQASGEQE 160
E S A+ E+E
Sbjct: 120 EVSFSLATRERE 131
Score = 31.6 bits (70), Expect = 0.94
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 54 PEEARLLAEIGAVTLVSAPRPDSRHHSLA----LTSFKRQQEESFQEQSALAAEARETRR 109
PE R+L L + P P S+ +LA TS +++ + + A AR+++R
Sbjct: 16 PENDRIL-------LSTFPYPHSKRENLAGLTNSTSSVKEEPPTLRHSMA-GTSARKSQR 67
Query: 110 QELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE 161
+E + + + K+++ ++ G +E + +E+E + + E+EE
Sbjct: 68 REEKRREEKRREEKRREEKRREGKRREKEEEKEEEEEEEEEEEEEEEEEEEE 119
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 74 PDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGA 133
P SL + ++QQ++ Q+Q + ++ ++Q+ ++ + + Q+ +Q +
Sbjct: 576 PSQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSS 635
Query: 134 SSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPRSALLVQ 186
S+Q+ Q ++ + Q +Q++ P SSQ S PL RS L +Q
Sbjct: 636 ISAQQQQQQQQQQQQQQQQQQQQQQQQQQQP-SSQPAQSLPSQPLLRSPLPLQ 687
>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
sapiens]
Length = 184
Score = 38.5 bits (88), Expect = 0.008
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 87 KRQQEESFQ---EQSALAAEARETRRQELLEKITEGQA-AKKQKLEQASGASSSQEAGSS 142
K++ + FQ E++ +AAE + +R++ +K+ E + AKK KLEQ ++ G
Sbjct: 102 KQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQ------KKQEGPG 155
Query: 143 QAAKEDETSDGQASG-EQEEAGPS 165
Q ++ +S +ASG E+EE PS
Sbjct: 156 QPKEQGSSSSAEASGTEEEEEVPS 179
>gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]
Length = 1256
Score = 38.1 bits (87), Expect = 0.010
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 44 SRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAE 103
SR G+ + P+ + EIG + V+ P D S QE F E S +
Sbjct: 688 SRSGVEIPRTPQ-LYVAHEIGTIKTVTPPE-DRDSESGVAGGQGTLQEPGFGEASEAISV 745
Query: 104 ARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE-A 162
+R + LL K +L AS ++ + E + SDG S E
Sbjct: 746 SRNRQPIPLLMNKENSTKTSKVELTLASPYMKQEKEEEKEGFSESDFSDGNTSSNAESWR 805
Query: 163 GPSSSQAGPSNGVAPLPRSA 182
PSSS+ PS + L RSA
Sbjct: 806 NPSSSEEEPSPVLKTLERSA 825
>gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]
Length = 1272
Score = 38.1 bits (87), Expect = 0.010
Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 44 SRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAE 103
SR G+ + P+ + EIG + V+ P D S QE F E S +
Sbjct: 688 SRSGVEIPRTPQ-LYVAHEIGTIKTVTPPE-DRDSESGVAGGQGTLQEPGFGEASEAISV 745
Query: 104 ARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE-A 162
+R + LL K +L AS ++ + E + SDG S E
Sbjct: 746 SRNRQPIPLLMNKENSTKTSKVELTLASPYMKQEKEEEKEGFSESDFSDGNTSSNAESWR 805
Query: 163 GPSSSQAGPSNGVAPLPRSA 182
PSSS+ PS + L RSA
Sbjct: 806 NPSSSEEEPSPVLKTLERSA 825
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 38.1 bits (87), Expect = 0.010
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 88 RQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKE 147
R+ E+SF EQ+ +R T ++ L ++ + + E+ A++ Q + +A +
Sbjct: 308 REMEKSFDEQNVPKRRSRNTAVEQRLRRLQDRSLTQPITTEEVVIAATLQASAHQKALAK 367
Query: 148 DETSDGQASGEQEEAGPSS 166
D+T++G+ EQ E S+
Sbjct: 368 DQTNEGKELAEQGEPDSST 386
>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
sapiens]
Length = 1101
Score = 38.1 bits (87), Expect = 0.010
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 22/149 (14%)
Query: 73 RPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQE---LLEKITEGQAAK---KQK 126
R + A R E+ QE + ++QE + E +GQ K + +
Sbjct: 752 REEDEQREEAQVEAGRDLEQGAQEDQVAEEKWEVVQKQEAEGVREDEDKGQREKGYHEAR 811
Query: 127 LEQASGASS-----SQEAGSSQAAKEDETSDGQASGEQEEAG--PSSSQAGPSNGVAPL- 178
+Q G S + E G+ + +KE E+ DG+A G+Q G +GVA L
Sbjct: 812 KDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLE 871
Query: 179 --------PRSALLVQLATARPRPVKARP 199
P S+ + ++A P+P + P
Sbjct: 872 VDCAKEGNPHSSEMEEVAPQPPQPEEMEP 900
>gi|4503381 down-regulator of transcription 1 [Homo sapiens]
Length = 176
Score = 37.7 bits (86), Expect = 0.013
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 77 RHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSS 136
R S L + +EE ++Q L A+AR+ + + ++ + Q A +Q A+ AS+S
Sbjct: 102 RKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASAS 161
Query: 137 QEAGSSQAAKEDE 149
+AGSSQ ++D+
Sbjct: 162 NQAGSSQDEEDDD 174
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 758 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 815
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 816 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 857
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 10 [Homo sapiens]
Length = 2155
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 9 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 8 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193794828 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 7 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
>gi|193788526 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 6 [Homo sapiens]
Length = 2158
Score = 37.4 bits (85), Expect = 0.017
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 82 ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
+LTS ++++EE +E+ LA A ++QEL+EK G+ +K++K+E S + + +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818
Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
++ +D E D E G + P V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,398,124
Number of Sequences: 37866
Number of extensions: 610609
Number of successful extensions: 5235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 4014
Number of HSP's gapped (non-prelim): 1262
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.