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Search of human proteins with 239746417
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746417 PREDICTED: hypothetical protein XP_002344207 [Homo
sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751932 PREDICTED: hypothetical protein XP_002348042 [Homo ... 276 3e-75
gi|239746417 PREDICTED: hypothetical protein XP_002344207 [Homo ... 276 3e-75
gi|4508001 zinc finger protein 165 [Homo sapiens] 30 0.54
gi|16418461 mitochondrial topoisomerase I [Homo sapiens] 30 0.70
gi|239755724 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 28 2.7
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 28 2.7
gi|239751469 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens] 27 3.5
gi|64368472 cytochrome P450, family 2, subfamily W, polypeptide ... 27 3.5
gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo sapi... 27 6.0
gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo sapi... 27 6.0
gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens] 27 6.0
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 27 6.0
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 27 6.0
gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Ho... 27 6.0
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 27 6.0
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 27 6.0
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 27 6.0
gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo sapi... 27 6.0
gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens] 26 7.8
gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens] 26 7.8
>gi|239751932 PREDICTED: hypothetical protein XP_002348042 [Homo
sapiens]
Length = 131
Score = 276 bits (706), Expect = 3e-75
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG 60
MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG
Sbjct: 1 MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG 60
Query: 61 AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH 120
AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH
Sbjct: 61 AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH 120
Query: 121 HPACAIVWLHY 131
HPACAIVWLHY
Sbjct: 121 HPACAIVWLHY 131
>gi|239746417 PREDICTED: hypothetical protein XP_002344207 [Homo
sapiens]
Length = 131
Score = 276 bits (706), Expect = 3e-75
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG 60
MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG
Sbjct: 1 MPFWRLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSG 60
Query: 61 AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH 120
AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH
Sbjct: 61 AVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLPLSGGYRKADVAH 120
Query: 121 HPACAIVWLHY 131
HPACAIVWLHY
Sbjct: 121 HPACAIVWLHY 131
>gi|4508001 zinc finger protein 165 [Homo sapiens]
Length = 485
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 58 SSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSL 90
S+G VKRQ W KE G RL+ +D+G G +
Sbjct: 229 SAGRVKRQ---WEKESGESQRLSSAQDEGFGKI 258
>gi|16418461 mitochondrial topoisomerase I [Homo sapiens]
Length = 601
Score = 29.6 bits (65), Expect = 0.70
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 40 LGNVPRLAARKPGLGVPGSSGAVKRQGQKWVKE 72
LG VPR A + GVPGS K G +W KE
Sbjct: 16 LGEVPRRPASR---GVPGSRRTQKGSGARWEKE 45
>gi|239755724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 481
Score = 29.3 bits (64), Expect = 0.92
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 36 WVKELGNVPRLAARKPGLGVPGSSGAVKR----QGQKWVKELGNIPRLA----VGRDQGL 87
W+ L + R+ G GS+G V+R Q + V++ + P++A G + G
Sbjct: 30 WLPRLDRRVTICERRAGGHATGSTGPVRRGRDPQALQGVRQ--SPPQVATAAGAGHESGE 87
Query: 88 GSLDPGSATELLCDCSVPLLPLSGGYRKADVAHHPACA 125
G++ LLCD +V LL L +R A P C+
Sbjct: 88 GAVFVQVKERLLCD-AVQLLQLLFNFRVMLTALTPICS 124
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 5 RLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSGAVKR 64
R + L+ GG + T+P+ + Q KW R RK LG PG SG++ R
Sbjct: 866 RAESLARGGGEGSMATRPSNANHL-SPQALKW--------REYRRKNPLGPPGLSGSLDR 916
Query: 65 QGQK 68
+ Q+
Sbjct: 917 RSQE 920
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 5 RLDKLSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLGVPGSSGAVKR 64
R + L+ GG + T+P+ + Q KW R RK LG PG SG++ R
Sbjct: 866 RAESLARGGGEGSMATRPSNANHL-SPQALKW--------REYRRKNPLGPPGLSGSLDR 916
Query: 65 QGQK 68
+ Q+
Sbjct: 917 RSQE 920
>gi|239751469 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.3 bits (59), Expect = 3.5
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVP 105
P +PGSSG + G + G +PR G + P TELL D S P
Sbjct: 37 PMSSIPGSSGCL---GVPFSAPEGCVPRPHAGLQATCPWISPSPPTELLQDLSNP 88
>gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]
Length = 1020
Score = 27.3 bits (59), Expect = 3.5
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + G + G K + G+ P A +G+G + G+ T ++ ++P+
Sbjct: 592 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPMSQ 651
Query: 109 LSGGYRKADVAH 120
++ KA V H
Sbjct: 652 VNPREAKACVVH 663
>gi|64368472 cytochrome P450, family 2, subfamily W, polypeptide 1
[Homo sapiens]
Length = 490
Score = 27.3 bits (59), Expect = 3.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 9 LSPGGVKRLRVTQPATGTGVVRSQCQKWVKELGNVPRLAARKPGLG 54
L PG RL Q T V + Q+++ L +VPR A LG
Sbjct: 330 LGPGRTPRLEDQQALPYTSAVLHEVQRFITLLPHVPRCTAADTQLG 375
>gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo
sapiens]
Length = 1023
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + G + G K + G+ P A +G+G + G+ T ++ ++P+
Sbjct: 595 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQ 654
Query: 109 LSGGYRKADVAH 120
++ KA V H
Sbjct: 655 VNPRDAKACVVH 666
>gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo
sapiens]
Length = 992
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + G + G K + G+ P A +G+G + G+ T ++ ++P+
Sbjct: 564 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQ 623
Query: 109 LSGGYRKADVAH 120
++ KA V H
Sbjct: 624 VNPRDAKACVVH 635
>gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens]
Length = 1023
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + G + G K + G+ P A +G+G + G+ T ++ ++P+
Sbjct: 595 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQ 654
Query: 109 LSGGYRKADVAH 120
++ KA V H
Sbjct: 655 VNPRDAKACVVH 666
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLP 108
PG G+PG S G++ +KE+ +A+ + LG+ PG T + +VP +P
Sbjct: 21 PGAGIPGKS------GEERLKEME--AEMALFEQEVLGAPVPGIPTAVPAVPTVPTVP 70
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 KLSPGGVKRLRVTQPATGTGVVRSQCQ 34
+L+ G ++ +R+ QP +GT VV+ Q Q
Sbjct: 208 QLNAGQLQYIRLAQPVSGTQVVQGQIQ 234
>gi|217272833 nuclear transcription factor Y, gamma isoform 4 [Homo
sapiens]
Length = 297
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 KLSPGGVKRLRVTQPATGTGVVRSQCQ 34
+L+ G ++ +R+ QP +GT VV+ Q Q
Sbjct: 204 QLNAGQLQYIRLAQPVSGTQVVQGQIQ 230
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 KLSPGGVKRLRVTQPATGTGVVRSQCQ 34
+L+ G ++ +R+ QP +GT VV+ Q Q
Sbjct: 242 QLNAGQLQYIRLAQPVSGTQVVQGQIQ 268
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 KLSPGGVKRLRVTQPATGTGVVRSQCQ 34
+L+ G ++ +R+ QP +GT VV+ Q Q
Sbjct: 242 QLNAGQLQYIRLAQPVSGTQVVQGQIQ 268
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 26.6 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 KLSPGGVKRLRVTQPATGTGVVRSQCQ 34
+L+ G ++ +R+ QP +GT VV+ Q Q
Sbjct: 242 QLNAGQLQYIRLAQPVSGTQVVQGQIQ 268
>gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo
sapiens]
Length = 1029
Score = 26.6 bits (57), Expect = 6.0
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + + G K + G+ P A +G+G + G+ T E+ +P+
Sbjct: 601 PRAAVPDAVSKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGTETAEEVAARLKIPISK 660
Query: 109 LSGGYRKADVAH 120
+ KA V H
Sbjct: 661 VDASAAKAIVVH 672
>gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens]
Length = 1013
Score = 26.2 bits (56), Expect = 7.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 51 PGLGVPGSSGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSAT--ELLCDCSVPLLP 108
P VP + G + G K + G+ P A +G+G + G+ T ++ ++P+
Sbjct: 585 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQ 644
Query: 109 LSGGYRKADVAH 120
++ KA V H
Sbjct: 645 VNPRDAKACVIH 656
>gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]
Length = 2432
Score = 26.2 bits (56), Expect = 7.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 59 SGAVKRQGQKWVKELGNIPRLAVGRDQGLGSLDPGSATELLCDCSVPLLP 108
S + K++ + WV EL + + A G+ + S S E + D S+P P
Sbjct: 1765 SDSKKKKRKNWVNELRSSFKQAFGKKKSPKSASSHSDIEEMTDSSLPSSP 1814
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,230,510
Number of Sequences: 37866
Number of extensions: 289255
Number of successful extensions: 667
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 22
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.