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Search of human proteins with 239746239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 297 2e-81
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 44 6e-05
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 43 1e-04
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 43 1e-04
gi|122937424 one cut homeobox 3 [Homo sapiens] 43 1e-04
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 42 2e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 42 2e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 42 2e-04
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 42 2e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 41 4e-04
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 40 5e-04
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 40 5e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 40 9e-04
gi|119395716 forkhead box C1 [Homo sapiens] 40 9e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 40 9e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 9e-04
gi|118498339 EMI domain containing 2 [Homo sapiens] 40 9e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.001
gi|239757315 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239751820 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo ... 39 0.002
gi|119943102 CREB binding protein isoform b [Homo sapiens] 39 0.002
gi|119943104 CREB binding protein isoform a [Homo sapiens] 39 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 39 0.002
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS
Sbjct: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
Query: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG
Sbjct: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
Query: 121 VGSARLARRVWREQGAACCGVRGP 144
VGSARLARRVWREQGAACCGVRGP
Sbjct: 121 VGSARLARRVWREQGAACCGVRGP 144
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS
Sbjct: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
Query: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG
Sbjct: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
Query: 121 VGSARLARRVWREQGAACCGVRGP 144
VGSARLARRVWREQGAACCGVRGP
Sbjct: 121 VGSARLARRVWREQGAACCGVRGP 144
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS
Sbjct: 1 MVSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAAS 60
Query: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG
Sbjct: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
Query: 121 VGSARLARRVWREQGAACCGVRGP 144
VGSARLARRVWREQGAACCGVRGP
Sbjct: 121 VGSARLARRVWREQGAACCGVRGP 144
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 43.5 bits (101), Expect = 6e-05
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 33 RAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGAPACR 92
R + P PT++ P ++R G +P +A G P +P AP P++P PA R
Sbjct: 88 RRLPPRPTRSPAPLARRPGKPPRRPKGAA-------GHPSAPPAAAPAAPAQP---PAPR 137
Query: 93 RHRLLSRRAAQSTNRGQAGGGRRAHG--------GGVGSARLARRVWREQGAACCG 140
LS R QS + G GR A GG+ AR ARR AA G
Sbjct: 138 PESQLSDRP-QSWEQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTG 192
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 42.7 bits (99), Expect = 1e-04
Identities = 42/140 (30%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 23 PPGGLHSERPRAVRPEPTQASQPASQRG-----GATVTKPAASARSAAAATGFPCSPGPR 77
PP H V P P + P+ Q GA +AR A +T P PGP
Sbjct: 268 PPTSPHQPPRLPVTPVPQSVALPSLQSARPAAAGAAPRLSPQAARCTALSTEKPDRPGPP 327
Query: 78 APPPPSRPMGAPACR-----RHRLLSRRAAQSTNRGQAGGGRRAHGGGVGSAR----LAR 128
PP P+ AP R HR L R +S+ +A RR+ + S R AR
Sbjct: 328 RRPPAPTPVSAPTLRSAPLDAHR-LRERLPESSVGPRAEPARRSRNAAMVSPRHQPGKAR 386
Query: 129 R--VWREQGAAC--CGVRGP 144
R +W E C C + P
Sbjct: 387 REGLWEEAVGTCGHCTLHSP 406
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 42.7 bits (99), Expect = 1e-04
Identities = 41/114 (35%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 16 PAPLARLPPGGLHSE-RPRAVRPE-PTQASQPASQRGGATVTKPAASARSAAAATGFPCS 73
PAPL PPG L S RP RP + PA++ +P R GFP +
Sbjct: 56 PAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR---CLPLRPHRPTRRHRRPGGFPLA 112
Query: 74 PGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQ--AGGGRRAHGGGVGSAR 125
G +P P RP AP L+ AA R Q G G R+H GG GS R
Sbjct: 113 WG--SPQPAPRP--APGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPR 162
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 42.7 bits (99), Expect = 1e-04
Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 47/165 (28%)
Query: 26 GLHSERPRAVRPEPTQASQP--------ASQRGGATVTKPAASARSAAA----------- 66
G H P A P P A P AS G T+ + +A ++
Sbjct: 135 GAHGGHPHA-HPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELP 193
Query: 67 ATGFPCSPGPRA------------PPPPSRPMGA---------------PACRRHRLLSR 99
A G P SP P A PPPP P+ A A H L
Sbjct: 194 AMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAAFEPHAALLG 253
Query: 100 RAAQSTNRGQAGGGRRAHGGGVGSARLARRVWREQGAACCGVRGP 144
RA + RG GGG GG GS A + G A G GP
Sbjct: 254 RAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGP 298
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 42.0 bits (97), Expect = 2e-04
Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 15 LPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSP 74
+PAP + PP + + P P P + P + V PA + A A P +
Sbjct: 130 VPAPASTPPPVPVLAPAPA---PAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAA 186
Query: 75 GPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGG---GRRAHGGGVGSARLARRVW 131
AP P P APA A Q N+GQ G + H G G
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAA 246
Query: 132 REQGAACCGVRGP 144
GAA + GP
Sbjct: 247 SANGAAIKKLSGP 259
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 42.0 bits (97), Expect = 2e-04
Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 15 LPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSP 74
+PAP + PP + + P P P + P + V PA + A A P +
Sbjct: 130 VPAPASTPPPVPVLAPAPA---PAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAA 186
Query: 75 GPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGG---GRRAHGGGVGSARLARRVW 131
AP P P APA A Q N+GQ G + H G G
Sbjct: 187 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAA 246
Query: 132 REQGAACCGVRGP 144
GAA + GP
Sbjct: 247 SANGAAIKKLSGP 259
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 42.0 bits (97), Expect = 2e-04
Identities = 36/133 (27%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Query: 15 LPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSP 74
+PAP + PP + + P P P + P + V PA + A A P +
Sbjct: 141 VPAPASTPPPVPVLAPAPA---PAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAA 197
Query: 75 GPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGG---GRRAHGGGVGSARLARRVW 131
AP P P APA A Q N+GQ G + H G G
Sbjct: 198 PAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQLHSGISGRPAAGTAAA 257
Query: 132 REQGAACCGVRGP 144
GAA + GP
Sbjct: 258 SANGAAIKKLSGP 270
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 42.0 bits (97), Expect = 2e-04
Identities = 45/144 (31%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 13 SSLPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRG-GATVTKPAASARSAAAATG-F 70
+ +P RL P + R R + E A Q R GA PA + AA TG
Sbjct: 114 AGIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPR 173
Query: 71 PCSPGPRAPPP-----------PSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGG 119
SPG R P P P+ P PA RR R RG+ R+ H
Sbjct: 174 HASPGARRPAPGARRSRPRLLRPASPPPRPAPRRRSTAPRHEGGRPGRGRT--RRQPHLA 231
Query: 120 GVGSARL-------ARRVWREQGA 136
G G ARL R+ R QGA
Sbjct: 232 GAGCARLELEGARMGERLHRRQGA 255
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 42.0 bits (97), Expect = 2e-04
Identities = 46/150 (30%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 2 VSTLSCQKIFTSSLPAPLARLPPG------------GLHSER-PRAVRPEPTQASQPASQ 48
+STLS + +SSL + PG GL + + R P +A+Q ++
Sbjct: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
Query: 49 RGGATVTKPAASARSAAAATGFPCSPGPRAPP-PPSRPMG--APACRRHRLLSRRAAQST 105
RGG +PA AR AA G G RA P P S P G PA RR R AQ+
Sbjct: 61 RGGGARERPAEGARGPRAARG-----GARAAPMPSSAPRGPTEPALRRPSSAERPLAQAP 115
Query: 106 NRGQAGGGRRAHGGGVGSARLARRVWREQG 135
+ + G RA G +R + + +G
Sbjct: 116 SSSASVG--RAPGAMASPSRSSEATGKPRG 143
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 21 RLPPGGLHS--ERPRAVRPEPTQAS----------QPASQRGGATVTKPAASARSAAAAT 68
R PGG R +VR P AS +P+ +R G T PAA +R+ A++
Sbjct: 269 RTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSW 328
Query: 69 GFPCSPGPRAPPPPSRPMGAPACRRHRLLSRR---AAQSTNRGQAGGGRR 115
+P P APP P +PA RL+ + AQ+ RG G R
Sbjct: 329 ESEAAPEPAAPPAAPSPPDSPA--EGRLVKAQYIPGAQAATRGLPGRAAR 376
Score = 32.0 bits (71), Expect = 0.18
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG 75
PA L+R SE P S P S G V K + AA G P
Sbjct: 317 PAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLV-KAQYIPGAQAATRGLPGRAA 375
Query: 76 PRAPPPPSRPMG---APACRRHRLLSRRAAQSTNRGQAGGGR 114
R PPP +R +P R R RR + G+ G R
Sbjct: 376 RRKPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPR 417
Score = 30.8 bits (68), Expect = 0.41
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 13 SSLPAPLARLPPGGLHSERPRAVR--PEPTQASQPAS--QRGGATVTKPAASARSA---A 65
S++P+ + P RP R P PT A+Q A +R +T AA R A
Sbjct: 435 SAVPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRA 494
Query: 66 AATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGGVGSA 124
A P PGP P R + A + R RG AGG GGG G +
Sbjct: 495 PAARVP-GPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGG----VGGGYGES 548
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 40.8 bits (94), Expect = 4e-04
Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 26 GLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPR---APPPP 82
G RP++ P P + + PA Q G T P A R A G P R A PPP
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGP---TAPPARVREPGRAEGASREPRLRSRAARPPP 244
Query: 83 SRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGGVG-----------SARLARRVW 131
+ GA + + R + G+ RA GGG G +R + W
Sbjct: 245 APGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAW 304
Query: 132 REQGAACCGVR 142
G A G+R
Sbjct: 305 GLSGCATVGLR 315
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 40.4 bits (93), Expect = 5e-04
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 4 TLSCQKIFTSSLP---APLARLPPGGLHSERPRAVR----PEPTQASQPASQRGGATVTK 56
TLSC+ + ++S + +A L E A P+P+ + +S+ GGA V +
Sbjct: 41 TLSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVAR 100
Query: 57 PAASARSAAAATGFPCSPGPRAPPPPSRPMGAPACRR-------------HRLLSRRAAQ 103
P AA+ PGP APPP AP+ LL +
Sbjct: 101 P----EPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGR 156
Query: 104 STNRGQAGGGRRAHGGGVGSA 124
RG+AG GR G +A
Sbjct: 157 GCARGRAGEGRAQCAGSPSTA 177
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 40.4 bits (93), Expect = 5e-04
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 4 TLSCQKIFTSSLP---APLARLPPGGLHSERPRAVR----PEPTQASQPASQRGGATVTK 56
TLSC+ + ++S + +A L E A P+P+ + +S+ GGA V +
Sbjct: 41 TLSCRWLSSASFSVASSSMALLSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVAR 100
Query: 57 PAASARSAAAATGFPCSPGPRAPPPPSRPMGAPACRR-------------HRLLSRRAAQ 103
P AA+ PGP APPP AP+ LL +
Sbjct: 101 P----EPGRAASPGSMVPGPPAPPPSGDQQPAPSAGSGSTADLPEWPWPLQLLLLLAPGR 156
Query: 104 STNRGQAGGGRRAHGGGVGSA 124
RG+AG GR G +A
Sbjct: 157 GCARGRAGEGRAQCAGSPSTA 177
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 39.7 bits (91), Expect = 9e-04
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 8 QKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQAS---QPASQRGGATVTKPAASARSA 64
+K S P LAR G+ P+A +Q S +P ++ GG + +PA+ +
Sbjct: 3672 RKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQPASGQLQS 3731
Query: 65 AAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGGVG 122
AT P PS P +PA RL +R A+S +G G + G +G
Sbjct: 3732 ETAT---------TPAKPSFPSRSPA--PERLPARAQAKSCTKGPREAGEQGPHGSLG 3778
Score = 27.3 bits (59), Expect = 4.5
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 57 PAASARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRA 116
P R A G P PR P + P + RR RL R+ + R+A
Sbjct: 991 PPRPRRPRTQAPGSRADPAPRVPRAAALPEETRSSRRRRLPPRKDPRK---------RKA 1041
Query: 117 HGGGVGSARLARRV 130
GG G + + V
Sbjct: 1042 RGGAWGKELILKIV 1055
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 39.7 bits (91), Expect = 9e-04
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 23 PPGGLHSERPRAVR------PEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG- 75
PPG L S RP ++ P P ++ P G +V S R + + S G
Sbjct: 273 PPGSLPSARPLSLDGADSAPPPPAPSAPPPHHSQGFSVDNIMTSLRGSPQSAAAELSSGL 332
Query: 76 -------PRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGGVGSA 124
RA P +GA + + L S +Q+++ G +GGG GGG G+A
Sbjct: 333 LASAAASSRAGIAPPLALGAYSPGQSSLYSSPCSQTSSAGSSGGG----GGGAGAA 384
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 39.7 bits (91), Expect = 9e-04
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 23 PPGGLHSERPRAVRPEPTQA-SQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPP 81
PP G S P+ + P PT A QPASQ T + S R A G P + P A P
Sbjct: 498 PPAG--SPLPQRL-PSPTSAPQQPASQAAPPTQGQGRQS-RPVAGGPGAPPAARPPASPS 553
Query: 82 PSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRR 115
P R G P R +S A + GG +R
Sbjct: 554 PQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQR 587
Score = 35.4 bits (80), Expect = 0.017
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG 75
P + PPGG + P P P ++ ASQ G T P + + + G P
Sbjct: 574 PPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPK 633
Query: 76 PRAPPPPSRPMGAPA 90
P+ PS+ + PA
Sbjct: 634 PQLAQKPSQDVPPPA 648
Score = 31.6 bits (70), Expect = 0.24
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 19 LARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRA 78
+A LP G + + P P A P + G T T +S + AA+ P A
Sbjct: 14 MANLPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAAS--------PAA 65
Query: 79 PPPPSRPMGAPACRRHRLLSR--RAAQSTNRGQAGGGRRAHGGGVGSARLARRV 130
P P S G + + AA +T Q GGG GG G A RV
Sbjct: 66 PSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGG----SGGAGRGGAASRV 115
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 39.7 bits (91), Expect = 9e-04
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 23 PPGGLHSERPRAVRPEPTQA-SQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPP 81
PP G S P+ + P PT A QPASQ T + S R A G P + P A P
Sbjct: 498 PPAG--SPLPQRL-PSPTSAPQQPASQAAPPTQGQGRQS-RPVAGGPGAPPAARPPASPS 553
Query: 82 PSRPMGAPACRRHRLLSRRAAQSTNRGQAGGGRR 115
P R G P R +S A + GG +R
Sbjct: 554 PQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQR 587
Score = 35.4 bits (80), Expect = 0.017
Identities = 21/75 (28%), Positives = 31/75 (41%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG 75
P + PPGG + P P P ++ ASQ G T P + + + G P
Sbjct: 574 PPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAGRPK 633
Query: 76 PRAPPPPSRPMGAPA 90
P+ PS+ + PA
Sbjct: 634 PQLAQKPSQDVPPPA 648
Score = 31.6 bits (70), Expect = 0.24
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 19 LARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRA 78
+A LP G + + P P A P + G T T +S + AA+ P A
Sbjct: 14 MANLPNGYMTDLQRPQPPPPPPGAHSPGATPGPGTATAERSSGVAPAAS--------PAA 65
Query: 79 PPPPSRPMGAPACRRHRLLSR--RAAQSTNRGQAGGGRRAHGGGVGSARLARRV 130
P P S G + + AA +T Q GGG GG G A RV
Sbjct: 66 PSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGG----SGGAGRGGAASRV 115
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 39.7 bits (91), Expect = 9e-04
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG 75
P P P G L+S +P PT S+ A V A G P PG
Sbjct: 262 PGPSPNSPQGALYSLQP------PTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPG 315
Query: 76 PRAPPPPSRPMGAPACRRHRLLSRRAAQSTNRGQAG-GGRRAHGGGVGSARLARRVWREQ 134
PR PP P G+ R + + +G+ G A G GV R A ++ E+
Sbjct: 316 PRGPPGPPGTPGSQGLAGERGTVGPSGEPGVKGEEGEKAATAEGEGVQQLREALKILAER 375
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.001
Identities = 28/72 (38%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 23 PPGGLHSERPRAVR-----PEPTQASQPASQRG--GATVTKPAASARSAAAATGFPCSPG 75
P G SE P+ VR P P A+ PA G G K A A A A GFP + G
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARG 416
Query: 76 PRAPPPPSRPMG 87
P P P P G
Sbjct: 417 PSGPQGPGGPPG 428
Score = 31.2 bits (69), Expect = 0.31
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 37 PEPTQASQPASQRG--GATVTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGAP 89
P P + P G GA K A + ATGFP + G PP PS G P
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Score = 30.0 bits (66), Expect = 0.70
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 23 PPGGLHSERPRAVR--PEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPP 80
PPG E R R P PT P +RGG + GFP + G P
Sbjct: 459 PPGPAGEEGKRGARGEPGPTGLPGPPGERGGP-------------GSRGFPGADGVAGPK 505
Query: 81 PPSRPMGAP 89
P+ G+P
Sbjct: 506 GPAGERGSP 514
Score = 29.6 bits (65), Expect = 0.91
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 39 PTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGA 88
P +A +P Q + P S A GFP G + PP P+ P GA
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSG--ARGERGFPGERGVQGPPGPAGPRGA 699
Score = 28.5 bits (62), Expect = 2.0
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 14 SLPAPLARLPPGGLH----SERPRAVRPEPTQASQPASQRGGATVTKPAASARSAA-AAT 68
S+P P+ P GL + P+ + P + +P + P ++
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEA 235
Query: 69 GFPCSPGPRAPPPPS------RPMGAPACRRHRLLSRRAAQSTNRGQAG 111
G P PG R PP P G P + HR S + G AG
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Score = 27.7 bits (60), Expect = 3.5
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 21 RLPPGGLHSERPRAVRPEPTQASQPASQRG--GATVTKPAASARSAAAATGFPCSPGPRA 78
++ P GL ER R P P A RG GAT A GFP + G +
Sbjct: 300 QMGPRGLPGERGRPGAPGP------AGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG 353
Query: 79 PPPPSRPMGA 88
P P G+
Sbjct: 354 EAGPQGPRGS 363
Score = 27.7 bits (60), Expect = 3.5
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 24 PGGLHSER-PRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPP 82
P G ER P P A P G + + A A + G P + G R P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPP-----GESGREGAPGAEGSPGRDGSPGAKGDRGETGP 1041
Query: 83 SRPMGAPACRRHRLLSRRAAQSTNRGQAG-GGRRAHGGGVGS 123
+ P GAP A +S +RG+ G G G VG+
Sbjct: 1042 AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGA 1083
Score = 27.3 bits (59), Expect = 4.5
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 23 PPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGP---RAP 79
P G S P + P +A +P A A TG P SPGP P
Sbjct: 507 PAGERGSPGPAGPKGSPGEAGRPGE-----------AGLPGAKGLTGSPGSPGPDGKTGP 555
Query: 80 PPPSRPMGAP 89
P P+ G P
Sbjct: 556 PGPAGQDGRP 565
Score = 26.9 bits (58), Expect = 5.9
Identities = 31/128 (24%), Positives = 41/128 (32%), Gaps = 7/128 (5%)
Query: 23 PPG--GLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPP 80
PPG G R P P+ + P G A + R G P GP PP
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG-KEGGKGPRGETGPAGRPGEVGPPGPP 928
Query: 81 PPSRPMGAPACRRHRLLSRRAAQSTNRGQAG----GGRRAHGGGVGSARLARRVWREQGA 136
P+ G+P GQ G G+R G G + ++ +
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
Query: 137 ACCGVRGP 144
G RGP
Sbjct: 989 GASGERGP 996
Score = 26.6 bits (57), Expect = 7.7
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 15 LPAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSP 74
+P P + P G E P P + PA +RG + A + GF P
Sbjct: 600 VPGPPGAVGPAGKDGEAGAQGPPGP---AGPAGERG----------EQGPAGSPGFQGLP 646
Query: 75 GPRAPP 80
GP PP
Sbjct: 647 GPAGPP 652
>gi|239757315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/113 (35%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 18 PLARLPPGGLHSERPRAVRPEP-----TQASQPASQRGGATVT--KPAASARSAAAATGF 70
P ARLP + P RP P T P R V+ A RSA A
Sbjct: 16 PPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA---- 71
Query: 71 PCSPGPRAPPPPSR---PMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
P P P APP P+R P PA R H R + S+ R +GG RRA G
Sbjct: 72 PPQPPP-APPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWG 123
>gi|239751820 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/113 (35%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 18 PLARLPPGGLHSERPRAVRPEP-----TQASQPASQRGGATVT--KPAASARSAAAATGF 70
P ARLP + P RP P T P R V+ A RSA A
Sbjct: 16 PPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA---- 71
Query: 71 PCSPGPRAPPPPSR---PMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
P P P APP P+R P PA R H R + S+ R +GG RRA G
Sbjct: 72 PPQPPP-APPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWG 123
>gi|239746311 PREDICTED: hypothetical protein XP_002343692 [Homo
sapiens]
Length = 144
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/113 (35%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 18 PLARLPPGGLHSERPRAVRPEP-----TQASQPASQRGGATVT--KPAASARSAAAATGF 70
P ARLP + P RP P T P R V+ A RSA A
Sbjct: 16 PPARLPVTAAAAPAPTRGRPLPYRSCPTNWVSPLQYRSSEDVSYRPQKAGPRSAIA---- 71
Query: 71 PCSPGPRAPPPPSR---PMGAPACRRHRLLSRRAAQSTNRGQAGGGRRAHGGG 120
P P P APP P+R P PA R H R + S+ R +GG RRA G
Sbjct: 72 PPQPPP-APPVPARARSPQPGPASRCHSNALRSSIPSSARLASGGRRRARRWG 123
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 2 VSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPAS-QRGGATVTKPAAS 60
++T++ + + SLP+P + PPG + P+P QP+ A A +
Sbjct: 1831 MATMNTRNVPQQSLPSPTSA-PPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVART 1889
Query: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQ 103
+TG P S P APPPP++P A A R + R A Q
Sbjct: 1890 QPPTTVSTGKPTSQVP-APPPPAQPPPA-AVEAARQIEREAQQ 1930
Score = 29.6 bits (65), Expect = 0.91
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 3 STLSCQKIFTSSL-----PAPLARLPPGGLHSERPRAVRPEPTQASQPAS--QRGGATVT 55
S L C + S L PA A P H+ P P+P +QP++ G T T
Sbjct: 803 SQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPT 862
Query: 56 KPAASARSAAAATGFP---CSPGPRAPPPPSRPMGAPA 90
S SA P + + P P P+ P+
Sbjct: 863 PTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPS 900
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 38.9 bits (89), Expect = 0.002
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 2 VSTLSCQKIFTSSLPAPLARLPPGGLHSERPRAVRPEPTQASQPAS-QRGGATVTKPAAS 60
++T++ + + SLP+P + PPG + P+P QP+ A A +
Sbjct: 1869 MATMNTRNVPQQSLPSPTSA-PPGTPTQQPSTPQTPQPPAQPQPSPVSMSPAGFPSVART 1927
Query: 61 ARSAAAATGFPCSPGPRAPPPPSRPMGAPACRRHRLLSRRAAQ 103
+TG P S P APPPP++P A A R + R A Q
Sbjct: 1928 QPPTTVSTGKPTSQVP-APPPPAQPPPA-AVEAARQIEREAQQ 1968
Score = 29.6 bits (65), Expect = 0.91
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 3 STLSCQKIFTSSL-----PAPLARLPPGGLHSERPRAVRPEPTQASQPAS--QRGGATVT 55
S L C + S L PA A P H+ P P+P +QP++ G T T
Sbjct: 841 SQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPT 900
Query: 56 KPAASARSAAAATGFP---CSPGPRAPPPPSRPMGAPA 90
S SA P + + P P P+ P+
Sbjct: 901 PTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPS 938
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 42 ASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGAPA-CRRHRLLSRR 100
A++ R GAT P + R A AA P APPPP P+ A A R R +
Sbjct: 96 AARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAA 155
Query: 101 AAQSTNRGQAGGGRRA 116
A + G A G RA
Sbjct: 156 ATAPPSPGPAQPGPRA 171
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPG 75
PAP R P G + A P P PA A PA + R+AAAA P SPG
Sbjct: 109 PAP-PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAA----PARAPRAAAAAATAPPSPG 163
Query: 76 PRAPPPPSR---PMGAP 89
P P P ++ P+ AP
Sbjct: 164 PAQPGPRAQRAAPLAAP 180
Score = 33.1 bits (74), Expect = 0.083
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 17 APLARLPPG-GLHSERPRAVRPEPTQASQPASQRGGATVTKPAASARS---AAAATGFPC 72
A A PP G PRA R P A PA A V PA R+ A AA P
Sbjct: 153 AAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPA-VAPPAGPRRAPPPAVAAREPPL 211
Query: 73 SPGPRAPPPPSRPMGAP 89
P P+ P PP + P
Sbjct: 212 PPPPQPPAPPQQQQPPP 228
Score = 27.3 bits (59), Expect = 4.5
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 16 PAPLARLPPGGLHSERP-RAVRPEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSP 74
P P PP + + P RA R A+ P S G A A A AA P +P
Sbjct: 129 PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSP-GPAQPGPRAQRAAPLAAPPPAPAAP 187
Query: 75 GPRAPPPPSRPMGAPA 90
APP R PA
Sbjct: 188 PAVAPPAGPRRAPPPA 203
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQR------GGATVTKPAASARSAAAATG 69
PAP A PP ERP A R A+QP + GG + P A A
Sbjct: 50 PAPAAAHPPAP--RERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPA 107
Query: 70 FPCSPGPRAPPPPSRPMGAP 89
P +P P P P+RP P
Sbjct: 108 VPAAPSP--GPLPARPSSPP 125
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 38.5 bits (88), Expect = 0.002
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 16 PAPLARLPPGGLHSERPRAVRPEPTQASQPASQR------GGATVTKPAASARSAAAATG 69
PAP A PP ERP A R A+QP + GG + P A A
Sbjct: 50 PAPAAAHPPAP--RERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPA 107
Query: 70 FPCSPGPRAPPPPSRPMGAP 89
P +P P P P+RP P
Sbjct: 108 VPAAPSP--GPLPARPSSPP 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,814,036
Number of Sequences: 37866
Number of extensions: 494373
Number of successful extensions: 11052
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 1159
Number of HSP's that attempted gapping in prelim test: 6426
Number of HSP's gapped (non-prelim): 4815
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.