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Search of human proteins with 239745747
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745747 PREDICTED: hypothetical protein XP_002343544 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756762 PREDICTED: hypothetical protein XP_002345047 [Homo ... 214 2e-56
gi|239745747 PREDICTED: hypothetical protein XP_002343544 [Homo ... 214 2e-56
gi|164663768 hypothetical protein LOC339263 [Homo sapiens] 48 2e-06
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 30 0.41
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 30 0.41
gi|11321636 tryptase delta 1 [Homo sapiens] 30 0.41
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 29 0.70
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 28 1.2
gi|209862787 hypothetical protein LOC100191040 [Homo sapiens] 28 1.6
gi|4503811 fucosyltransferase 4 [Homo sapiens] 28 2.0
gi|239749721 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239743976 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|9789897 leukotriene B4 receptor 2 [Homo sapiens] 27 3.5
gi|239755208 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|19882241 immunoglobulin superfamily, DCC subclass, member 4 [... 27 3.5
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 27 4.6
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 27 4.6
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 27 4.6
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 26 7.8
gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo ... 26 7.8
gi|13775595 tryptase alpha/beta 1 precursor [Homo sapiens] 26 7.8
gi|68508970 tryptase beta 2 precursor [Homo sapiens] 26 7.8
gi|155029539 alpha accessory factor 132 [Homo sapiens] 26 7.8
>gi|239756762 PREDICTED: hypothetical protein XP_002345047 [Homo
sapiens]
Length = 99
Score = 214 bits (544), Expect = 2e-56
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR 60
MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR
Sbjct: 1 MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR 60
Query: 61 LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG 99
LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG
Sbjct: 61 LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG 99
>gi|239745747 PREDICTED: hypothetical protein XP_002343544 [Homo
sapiens]
Length = 99
Score = 214 bits (544), Expect = 2e-56
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR 60
MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR
Sbjct: 1 MQTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLR 60
Query: 61 LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG 99
LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG
Sbjct: 61 LHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPRSVQG 99
>gi|164663768 hypothetical protein LOC339263 [Homo sapiens]
Length = 221
Score = 47.8 bits (112), Expect = 2e-06
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 4 GSSACTCEDPYAPWGFTPFA-GSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLRLH 62
G TC+ PYAPW FTP + + R +W +++ P P P +
Sbjct: 17 GKLGRTCDHPYAPWSFTPSSRAPTAWVRPPCPVWASRLQEHS-PEPRRARAPPTRRAQAA 75
Query: 63 FCTPALHLRDHLGHFSILIKS 83
PAL LRDHL FSIL+ S
Sbjct: 76 LYAPALRLRDHLDRFSILMTS 96
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 2 QTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPL-GHKNT----GPSPGELAGLPP 56
+T +C +P +PW + LG L GP GH++ GPS G AGL P
Sbjct: 388 RTHPGEASCCNPGSPWSWDL---QGLLGGAQLCPHGPPPGHRSAPSFPGPSSGSSAGLEP 444
Query: 57 AVLRLHFCTPALHL 70
V H T L L
Sbjct: 445 RVQFSHKRTEGLSL 458
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 2 QTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPL-GHKNT----GPSPGELAGLPP 56
+T +C +P +PW + LG L GP GH++ GPS G AGL P
Sbjct: 388 RTHPGEASCCNPGSPWSWDL---QGLLGGAQLCPHGPPPGHRSAPSFPGPSSGSSAGLEP 444
Query: 57 AVLRLHFCTPALHL 70
V H T L L
Sbjct: 445 RVQFSHKRTEGLSL 458
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 2 QTGSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPL-GHKNT----GPSPGELAGLPP 56
+T +C +P +PW + LG L GP GH++ GPS G AGL P
Sbjct: 388 RTHPGEASCCNPGSPWSWDL---QGLLGGAQLCPHGPPPGHRSAPSFPGPSSGSSAGLEP 444
Query: 57 AVLRLHFCTPALHL 70
V H T L L
Sbjct: 445 RVQFSHKRTEGLSL 458
>gi|11321636 tryptase delta 1 [Homo sapiens]
Length = 242
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 36 WGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPR 95
WG + + P P L + V+ H C H H GH +++ + AGS +
Sbjct: 167 WGDVDNNVHLPPPYPLKEVEVPVVENHLCNAEYHTGLHTGHSFQIVRDD-MLCAGSENHD 225
Query: 96 SVQG 99
S QG
Sbjct: 226 SCQG 229
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 37 GPLGHKNTGPSPGELAGLPPAVLRLHF-CTPALHLRDHLGHFSILIKSPYFVAAGSSSP 94
GP SPG+ G PP + + CT H RD++ + SP + G +SP
Sbjct: 1212 GPFPTSRARGSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASP 1270
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 34 VLWGPLGHKNTGPSPGELAGLP 55
+LWGP GHK SP E LP
Sbjct: 454 LLWGPDGHKQGNQSPAERVLLP 475
>gi|209862787 hypothetical protein LOC100191040 [Homo sapiens]
Length = 353
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 45 GPSPGELAGLPPAVLRLHFCTPALHL 70
GP P GLP A RLH P L L
Sbjct: 109 GPPPAPAGGLPAAQSRLHVSAPDLRL 134
>gi|4503811 fucosyltransferase 4 [Homo sapiens]
Length = 530
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 8 CTCEDPYAPWGFTP----FAGSNSLGRGLLVLWGPLGHKNTGPSP 48
CT YA WG P + + S G+L+ W P G +++ P P
Sbjct: 163 CTALITYACWGQLPPLPWASPTPSRPVGVLLWWEPFGGRDSAPRP 207
>gi|239749721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 24 GSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPP 56
GS + G L GP + GP PG LA LPP
Sbjct: 332 GSRAAGTAALSAGGPGSQASGGPRPG-LAALPP 363
>gi|239743976 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 24 GSNSLGRGLLVLWGPLGHKNTGPSPGELAGLPP 56
GS + G L GP + GP PG LA LPP
Sbjct: 332 GSRAAGTAALSAGGPGSQASGGPRPG-LAALPP 363
>gi|9789897 leukotriene B4 receptor 2 [Homo sapiens]
Length = 389
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 25 SNSLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHLGHFSILIKSP 84
S + G L+L LG G LAG PA R T LHL L ++L+ +P
Sbjct: 50 SRATGTAFLLLAALLGLPGNGFVVWSLAGWRPARGRPLAATLVLHLA--LADGAVLLLTP 107
Query: 85 YFVA 88
FVA
Sbjct: 108 LFVA 111
>gi|239755208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 307
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 1 MQTGSSACTCEDPYAPWG-FTPFAGSNSLGRGLLVLWGPLGHKNTG--PSPGELAGLPPA 57
M +G C CE WG P G +L R L L LG +PGE+ L
Sbjct: 58 MASGGRGCDCETGVQEWGQGGPGGGHRALARTRLALLLGLGRAACPLLRAPGEVHPLLVH 117
Query: 58 VLRLH 62
L LH
Sbjct: 118 ALSLH 122
>gi|19882241 immunoglobulin superfamily, DCC subclass, member 4
[Homo sapiens]
Length = 1250
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 43 NTGPSPGELAGLPPAVLRLHFCTP 66
+T PS L+ L P+ +RLH+C P
Sbjct: 848 STPPSDLRLSPLTPSTVRLHWCPP 871
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 GSSACTCEDPYAPWGFTPFAGSNSLGRGLLVLWGPLGHKNTGPSP 48
GS +C C +P +TP + N L + V G H PSP
Sbjct: 398 GSESCNCTEPLCRTDWTPMSSENYLQKE--VDSGHCPHWAASPSP 440
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 36 WGPLGHKNTGPSPGELA 52
W P G K TGP PG A
Sbjct: 235 WLPRGRKGTGPGPGRAA 251
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 36 WGPLGHKNTGPSPGELA 52
W P G K TGP PG A
Sbjct: 300 WLPRGRKGTGPGPGRAA 316
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 36 WGPLGHKNTGPSPGELA 52
W P G K TGP PG A
Sbjct: 300 WLPRGRKGTGPGPGRAA 316
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 27 SLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHL 74
++G GLL L PL KN G G ++ L VL +H L+ HL
Sbjct: 55 NIGTGLLGL--PLAIKNAGLLVGPVSLLAIGVLTVHCMVILLNCAQHL 100
>gi|222446640 solute carrier family 36, member 3 isoform 2 [Homo
sapiens]
Length = 470
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 27 SLGRGLLVLWGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHL 74
++G GLL L PL KN G G ++ L VL +H L+ HL
Sbjct: 55 NIGTGLLGL--PLAIKNAGLLVGPVSLLAIGVLTVHCMVILLNCAQHL 100
>gi|13775595 tryptase alpha/beta 1 precursor [Homo sapiens]
Length = 275
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 36 WGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPR 95
WG + + P P L + ++ H C HL + G + I + AG++
Sbjct: 160 WGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGD-DVRIVRDDMLCAGNTRRD 218
Query: 96 SVQG 99
S QG
Sbjct: 219 SCQG 222
>gi|68508970 tryptase beta 2 precursor [Homo sapiens]
Length = 275
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 36 WGPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHLGHFSILIKSPYFVAAGSSSPR 95
WG + + P P L + ++ H C HL + G + I + AG++
Sbjct: 160 WGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGD-DVRIVRDDMLCAGNTRRD 218
Query: 96 SVQG 99
S QG
Sbjct: 219 SCQG 222
>gi|155029539 alpha accessory factor 132 [Homo sapiens]
Length = 1217
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 17 WGFTPFAGSNSLGRGLLVLW-GPLGHKNTGPSPGELAGLPPAVLRLHFCTPALHLRDHL 74
W + P A NS G G L LW P+ SPG + +P VL + L LR+ L
Sbjct: 163 WSYLPPARWNSSGEGHLELWDAPVPVFPLTISPGPVTPIP--VLYPESASCLLRLRNKL 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,864,384
Number of Sequences: 37866
Number of extensions: 237744
Number of successful extensions: 555
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 25
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.