Search of human proteins with 239745050

Search of human proteins with 239745050

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo
sapiens]
         (50 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756227 PREDICTED: hypothetical protein [Homo sapiens]           115   6e-27
gi|239752641 PREDICTED: hypothetical protein [Homo sapiens]           115   6e-27
gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo ...   115   6e-27
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ...   106   5e-24
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ...    97   2e-21
gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]            93   4e-20
gi|239757732 PREDICTED: similar to KIAA1654 protein [Homo sapiens]     26   5.9  
gi|171543895 ataxin 2 [Homo sapiens]                                   26   5.9  

>gi|239756227 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 50

 Score =  115 bits (289), Expect = 6e-27
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
          MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA
Sbjct: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50


>gi|239752641 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 50

 Score =  115 bits (289), Expect = 6e-27
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
          MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA
Sbjct: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50


>gi|239745050 PREDICTED: hypothetical protein XP_002343356 [Homo
          sapiens]
          Length = 50

 Score =  115 bits (289), Expect = 6e-27
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
          MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA
Sbjct: 1  MWPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50


>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
           sapiens]
          Length = 138

 Score =  106 bits (264), Expect = 5e-24
 Identities = 47/49 (95%), Positives = 47/49 (95%)

Query: 2   WPGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
           WPGREGHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 90  WPGREGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 138


>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
          sapiens]
          Length = 80

 Score = 97.4 bits (241), Expect = 2e-21
 Identities = 44/48 (91%), Positives = 44/48 (91%)

Query: 3  PGREGHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
          PG  GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 33 PGATGHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 80


>gi|239756961 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score = 93.2 bits (230), Expect = 4e-20
 Identities = 42/44 (95%), Positives = 42/44 (95%)

Query: 7   GHADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFPGPGTPSA 50
           GHADGNIPAGPGLCSPQLLL G QLFWAPEVLRSPFPGPGTPSA
Sbjct: 62  GHADGNIPAGPGLCSPQLLLPGGQLFWAPEVLRSPFPGPGTPSA 105


>gi|239757732 PREDICTED: similar to KIAA1654 protein [Homo
          sapiens]
          Length = 110

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 9  ADGNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFP 43
          A+G  PA  G CS  LLL  W L   P     P P
Sbjct: 36 AEGGEPAQEGPCSSDLLL--WSLLATPPAQGRPSP 68


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 11  GNIPAGPGLCSPQLLLLGWQLFWAPEVLRSPFP 43
           GN P+GP L SPQ  ++  +    P    SP P
Sbjct: 699 GNTPSGPVLASPQAGIIPTEAVAMPIPAASPTP 731


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.145    0.530 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,439,387
Number of Sequences: 37866
Number of extensions: 170831
Number of successful extensions: 344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 8
length of query: 50
length of database: 18,247,518
effective HSP length: 24
effective length of query: 26
effective length of database: 17,338,734
effective search space: 450807084
effective search space used: 450807084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.