Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287334 Sequence: fasta or formatted (90aa) NCBI GI: 239744709
Description:

PREDICTED: hypothetical protein XP_002343201

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         13           2
 C cysteine            1.1          1           1
 D aspartate           3.3          3           1
 E glutamate           5.6          5           1
 F phenylalanine       2.2          2           1
 G glycine             7.8          7           1
 H histidine           1.1          1           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine             5.6          5           1
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline            20.0         18           2
 Q glutamine           1.1          1           1
 R arginine           12.2         11           2
 S serine             10.0          9           1
 T threonine           7.8          7           2
 V valine              1.1          1           1
 W tryptophan          2.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343201 
LOC100292037          1.000   PREDICTED: hypothetical protein XP_002344729 
LOC100290821          1.000   PREDICTED: hypothetical protein XP_002347416 
EPN1                  0.072   epsin 1 isoform c 
EPN1                  0.072   epsin 1 isoform b 
EPN1                  0.072   epsin 1 isoform a 
LOC100292443          0.072   PREDICTED: hypothetical protein 
LOC100292589          0.072   PREDICTED: hypothetical protein 
LOC100290121          0.072   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.072   PREDICTED: hypothetical protein XP_002342721 
LOC389813             0.072   similar to CG15216-PA 
LOC100292934          0.066   PREDICTED: hypothetical protein 
LOC100287524          0.066   PREDICTED: hypothetical protein XP_002342307 
SYN3                  0.060   synapsin III isoform IIIg 
SYN3                  0.060   synapsin III isoform IIIa 
ZCCHC2                0.060   zinc finger, CCHC domain containing 2 
LOC100293941          0.060   PREDICTED: hypothetical protein 
LOC100290130          0.060   PREDICTED: hypothetical protein XP_002346833 
LOC100287611          0.060   PREDICTED: hypothetical protein XP_002342665 
SYN1                  0.054   synapsin I isoform Ia 
SYN1                  0.054   synapsin I isoform Ib 
THSD1                 0.054   thrombospondin type I domain-containing 1 isoform 2 ...
THSD1                 0.054   thrombospondin type I domain-containing 1 isoform 1 [...
LOC100128142          0.054   PREDICTED: hypothetical protein 
LOC100128142          0.054   PREDICTED: similar to RIKEN cDNA E130309D14 
FMNL1                 0.054   formin-like 1 
HCN2                  0.048   hyperpolarization activated cyclic nucleotide-gated...
LOC100292745          0.048   PREDICTED: hypothetical protein 
LOC100290074          0.048   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.048   PREDICTED: hypothetical protein XP_002342693 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press