Guide to the Human Genome
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Name: LOC100289417 Sequence: fasta or formatted (106aa) NCBI GI: 239744657
Description:

PREDICTED: hypothetical protein XP_002343217

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          5           2
 C cysteine            0.9          1           1
 D aspartate           6.6          7           2
 E glutamate          12.3         13           2
 F phenylalanine       0.9          1           1
 G glycine             9.4         10           2
 H histidine           0.0          0           0
 I isoleucine          5.7          6           1
 K lysine              7.5          8           1
 L leucine             2.8          3           1
 M methionine          1.9          2           1
 N asparagine          2.8          3           1
 P proline             8.5          9           1
 Q glutamine          11.3         12           2
 R arginine            3.8          4           1
 S serine              5.7          6           1
 T threonine           4.7          5           1
 V valine              7.5          8           3
 W tryptophan          0.9          1           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343217 
LOC100292840          1.000   PREDICTED: similar to XAGE-3 protein 
LOC100289968          1.000   PREDICTED: hypothetical protein XP_002347379 
PAGE3                 0.285   P antigen family, member 3 (prostate associated) [Ho...
XAGE3                 0.275   XAGE-3 protein 
XAGE3                 0.275   XAGE-3 protein 
XAGE5                 0.254   X antigen family, member 5 
PAGE5                 0.233   P antigen family, member 5 isoform 1 
PAGE5                 0.228   P antigen family, member 5 isoform 2 
PAGE2B                0.223   P antigen family, member 2B 
PAGE2                 0.218   P antigen family, member 2 
XAGE2B                0.161   X antigen family, member 2-like 
XAGE2                 0.161   XAGE-2 protein 
PAGE1                 0.150   P antigen family, member 1 
GAGE10                0.135   G antigen 10 
PIWIL1                0.124   piwi-like 1 
PAGE4                 0.114   G antigen, family C, 1 
GAGE2D                0.104   G antigen 2D 
GAGE8                 0.104   G antigen 8 
GAGE13                0.104   G antigen 13 
GAGE2E                0.104   G antigen 2E 
GAGE6                 0.104   G antigen 6 
GAGE5                 0.104   G antigen 5 
GAGE4                 0.104   G antigen 4 
GAGE1                 0.104   G antigen 1 isoform 2 
GAGE1                 0.104   G antigen 1 isoform 1 
GAGE12J               0.104   G antigen 12J 
GAGE2A                0.093   G antigen 2A 
GAGE2B                0.093   G antigen 2B 
GAGE2C                0.093   G antigen 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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