Guide to the Human Genome
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Search of human proteins with 116686136

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116686136 C1q and tumor necrosis factor related protein 8
[Homo sapiens]
         (252 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116686136 C1q and tumor necrosis factor related protein 8 [Ho...   526   e-150
gi|32967300 C1q and tumor necrosis factor related protein 6 [Hom...   245   3e-65
gi|32967294 C1q and tumor necrosis factor related protein 6 [Hom...   245   3e-65
gi|38372917 C1q and tumor necrosis factor related protein 1 isof...   233   9e-62
gi|13569944 C1q and tumor necrosis factor related protein 1 isof...   233   9e-62
gi|38372913 C1q and tumor necrosis factor related protein 1 [Hom...   227   9e-60
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ...    92   3e-19
gi|148233912 C1q and tumor necrosis factor related protein 4 [Ho...    92   6e-19
gi|4757760 adiponectin precursor [Homo sapiens]                        86   4e-17
gi|5729785 complement component 1, q subcomponent-like 1 [Homo s...    84   9e-17
gi|58801559 complement component 1, q subcomponent-like 3 [Homo ...    84   2e-16
gi|7705753 complement component 1, q subcomponent, A chain precu...    82   4e-16
gi|65301115 C1q and tumor necrosis factor related protein 9 [Hom...    82   4e-16
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho...    79   5e-15
gi|56786155 complement component 1, q subcomponent, C chain prec...    78   6e-15
gi|166235903 complement component 1, q subcomponent, C chain pre...    78   6e-15
gi|94818738 C1q and tumor necrosis factor related protein 2 [Hom...    77   1e-14
gi|14149712 C1q and tumor necrosis factor related protein 5 prec...    77   2e-14
gi|13569919 C1q and tumor necrosis factor related protein 3 isof...    75   4e-14
gi|62739183 C1q and tumor necrosis factor related protein 3 isof...    75   4e-14
gi|154937344 complement component 1, q subcomponent-like 2 [Homo...    72   4e-13
gi|122937273 hypothetical protein LOC131149 [Homo sapiens]             71   8e-13
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           70   1e-12
gi|13994280 C1q and tumor necrosis factor related protein 7 isof...    69   3e-12
gi|206597454 C1q and tumor necrosis factor related protein 7 iso...    69   3e-12
gi|206597452 C1q and tumor necrosis factor related protein 7 iso...    69   3e-12
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                67   1e-11
gi|87298828 complement component 1, q subcomponent, B chain prec...    62   6e-10
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]        62   6e-10
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]        62   6e-10

>gi|116686136 C1q and tumor necrosis factor related protein 8 [Homo
           sapiens]
          Length = 252

 Score =  526 bits (1354), Expect = e-150
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MAAPALLLLALLLPVGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVR 60
           MAAPALLLLALLLPVGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVR
Sbjct: 1   MAAPALLLLALLLPVGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVR 60

Query: 61  PTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFS 120
           PTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFS
Sbjct: 61  PTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFS 120

Query: 121 VGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYL 180
           VGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYL
Sbjct: 121 VGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYL 180

Query: 181 HIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYIT 240
           HIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYIT
Sbjct: 181 HIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYIT 240

Query: 241 FSGHLVKPAAEL 252
           FSGHLVKPAAEL
Sbjct: 241 FSGHLVKPAAEL 252


>gi|32967300 C1q and tumor necrosis factor related protein 6 [Homo
           sapiens]
          Length = 278

 Score =  245 bits (625), Expect = 3e-65
 Identities = 121/222 (54%), Positives = 152/222 (68%), Gaps = 3/222 (1%)

Query: 26  CVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSG 85
           C  CC    P  P A VS            LP +RP I+I ILKG+KG+ G  G  G  G
Sbjct: 56  CQRCCDSEDPLDP-AHVSSAS--SSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMG 112

Query: 86  KEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHSSDHFQAVPFDTELVNL 145
           +EGP G  G QG +G KG++G PGA C++ + AFSVGR+  LHS + FQ + F+   VNL
Sbjct: 113 REGPQGEPGPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNL 172

Query: 146 DGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQ 205
           DG FD+A G+F   + G+YF SLNVH+WNYKETY+HIM N++ A +LYAQPSERS+MQ+Q
Sbjct: 173 DGCFDMATGQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQ 232

Query: 206 SLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVK 247
           S+ML LA GD VWVR+F+R R+NAIY    D YITFSGHL+K
Sbjct: 233 SVMLDLAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIK 274


>gi|32967294 C1q and tumor necrosis factor related protein 6 [Homo
           sapiens]
          Length = 278

 Score =  245 bits (625), Expect = 3e-65
 Identities = 121/222 (54%), Positives = 152/222 (68%), Gaps = 3/222 (1%)

Query: 26  CVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSG 85
           C  CC    P  P A VS            LP +RP I+I ILKG+KG+ G  G  G  G
Sbjct: 56  CQRCCDSEDPLDP-AHVSSAS--SSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMG 112

Query: 86  KEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHSSDHFQAVPFDTELVNL 145
           +EGP G  G QG +G KG++G PGA C++ + AFSVGR+  LHS + FQ + F+   VNL
Sbjct: 113 REGPQGEPGPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNL 172

Query: 146 DGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQ 205
           DG FD+A G+F   + G+YF SLNVH+WNYKETY+HIM N++ A +LYAQPSERS+MQ+Q
Sbjct: 173 DGCFDMATGQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQ 232

Query: 206 SLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVK 247
           S+ML LA GD VWVR+F+R R+NAIY    D YITFSGHL+K
Sbjct: 233 SVMLDLAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIK 274


>gi|38372917 C1q and tumor necrosis factor related protein 1 isoform
           1 [Homo sapiens]
          Length = 281

 Score =  233 bits (595), Expect = 9e-62
 Identities = 119/232 (51%), Positives = 148/232 (63%), Gaps = 18/232 (7%)

Query: 20  GLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRG 79
           GLP   C+ CC P     P   V                  P I+I ILKGEKG+ G RG
Sbjct: 67  GLPASRCLRCCDPGTSMYPATAV------------------PQINITILKGEKGDRGDRG 108

Query: 80  RAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHSSDHFQAVPFD 139
             G+ GK G  GARG  G +GQKG +G PG  C+  YAAFSVGR++ +HS+ ++Q V FD
Sbjct: 109 LQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSHYAAFSVGRKKPMHSNHYYQTVIFD 168

Query: 140 TELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSER 199
           TE VNL   F++  G+F C VPG+YF SLNVHTWN KETYLHIM N     +L+AQ  +R
Sbjct: 169 TEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYLHIMKNEEEVVILFAQVGDR 228

Query: 200 SVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKPAAE 251
           S+MQ+QSLML L   D VWVR+++ +R+NAI+ E  D YITFSG+LVK A E
Sbjct: 229 SIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATE 280


>gi|13569944 C1q and tumor necrosis factor related protein 1 isoform
           1 [Homo sapiens]
          Length = 281

 Score =  233 bits (595), Expect = 9e-62
 Identities = 119/232 (51%), Positives = 148/232 (63%), Gaps = 18/232 (7%)

Query: 20  GLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRG 79
           GLP   C+ CC P     P   V                  P I+I ILKGEKG+ G RG
Sbjct: 67  GLPASRCLRCCDPGTSMYPATAV------------------PQINITILKGEKGDRGDRG 108

Query: 80  RAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHSSDHFQAVPFD 139
             G+ GK G  GARG  G +GQKG +G PG  C+  YAAFSVGR++ +HS+ ++Q V FD
Sbjct: 109 LQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSHYAAFSVGRKKPMHSNHYYQTVIFD 168

Query: 140 TELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSER 199
           TE VNL   F++  G+F C VPG+YF SLNVHTWN KETYLHIM N     +L+AQ  +R
Sbjct: 169 TEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYLHIMKNEEEVVILFAQVGDR 228

Query: 200 SVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKPAAE 251
           S+MQ+QSLML L   D VWVR+++ +R+NAI+ E  D YITFSG+LVK A E
Sbjct: 229 SIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATE 280


>gi|38372913 C1q and tumor necrosis factor related protein 1 [Homo
           sapiens]
          Length = 199

 Score =  227 bits (578), Expect = 9e-60
 Identities = 110/191 (57%), Positives = 138/191 (72%)

Query: 61  PTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFS 120
           P I+I ILKGEKG+ G RG  G+ GK G  GARG  G +GQKG +G PG  C+  YAAFS
Sbjct: 8   PQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSHYAAFS 67

Query: 121 VGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYL 180
           VGR++ +HS+ ++Q V FDTE VNL   F++  G+F C VPG+YF SLNVHTWN KETYL
Sbjct: 68  VGRKKPMHSNHYYQTVIFDTEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQKETYL 127

Query: 181 HIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYIT 240
           HIM N     +L+AQ  +RS+MQ+QSLML L   D VWVR+++ +R+NAI+ E  D YIT
Sbjct: 128 HIMKNEEEVVILFAQVGDRSIMQSQSLMLELREQDQVWVRLYKGERENAIFSEELDTYIT 187

Query: 241 FSGHLVKPAAE 251
           FSG+LVK A E
Sbjct: 188 FSGYLVKHATE 198


>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
           sapiens]
          Length = 238

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG--------AACRRAYAAFSV 121
           G KGE G RG+AG  G  GPPG RG  G  G+ G  GPPG        AA      AF  
Sbjct: 55  GAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPAAGYVPRIAFYA 114

Query: 122 GRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV--HTWNYKETY 179
           G R      + ++ + FD  + N+  A++ A+G+F C +PGVYF + +V     +    +
Sbjct: 115 GLR---RPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMW 171

Query: 180 LHIMLNRRPAAVLYAQPSERSVMQA-QSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLY 238
             +M N +  A   AQ ++++   A  S++L L  GD V++++        ++G + + Y
Sbjct: 172 ADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKL----DGGKVHGGNTNKY 227

Query: 239 ITFSGHLVKP 248
            TFSG ++ P
Sbjct: 228 STFSGFIIYP 237


>gi|148233912 C1q and tumor necrosis factor related protein 4 [Homo
           sapiens]
          Length = 329

 Score = 91.7 bits (226), Expect = 6e-19
 Identities = 65/150 (43%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query: 106 GPPGAACRRAYAAFSVGRREGLHSSD-----HFQAVPFDTELVNLDGAFDLAAGRFLCTV 160
           GPP     R+  AFS  R   L  SD       Q + FDTE VN+ G FD AAG F C +
Sbjct: 168 GPPAPPEPRS--AFSAARTRSLVGSDAGPGPRHQPLAFDTEFVNIGGDFDAAAGVFRCRL 225

Query: 161 PGVYFLSLNVHTWNYKETYLHIMLNRRPA-AVLYAQ-PSERSVMQAQSLMLLLAAGDAVW 218
           PG YF S  +     K   + +M NR    A++Y    S R  MQ+QS+ML L  GDAVW
Sbjct: 226 PGAYFFSFTLGKLPRKTLSVKLMKNRDEVQAMIYDDGASRRREMQSQSVMLALRRGDAVW 285

Query: 219 VRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
           +     D   A Y  HG  YITFSG LV P
Sbjct: 286 LLSHDHDGYGA-YSNHGK-YITFSGFLVYP 313



 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 52/151 (34%), Positives = 68/151 (45%), Gaps = 10/151 (6%)

Query: 105 VGP-PGAACRRAYAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGV 163
           +GP PG       +AFS  R   L  +    AV FD   VN+ G FD+A G+F C VPG 
Sbjct: 17  LGPTPGPGSSELRSAFSAARTTPLEGTSEM-AVTFDKVYVNIGGDFDVATGQFRCRVPGA 75

Query: 164 YFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQ---AQSLMLLLAAGDAVWVR 220
           YF S       +K   + ++ NR     L      R   +   +QS ML L  GD VW+R
Sbjct: 76  YFFSFTAGKAPHKSLSVMLVRNRDEVQALAFDEQRRPGARRAASQSAMLQLDYGDTVWLR 135

Query: 221 MFQRDRDNAIYGEHGDLYITFSGHLVKPAAE 251
           +          G  G    TFSG+LV   A+
Sbjct: 136 L--HGAPQYALGAPG---ATFSGYLVYADAD 161


>gi|4757760 adiponectin precursor [Homo sapiens]
          Length = 244

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLH 128
           KGEKG+ G+ G  G  G+ G PGA G +G  G +G+ G PG       +AFSVG    + 
Sbjct: 65  KGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVT 124

Query: 129 SSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRP 188
             +    + F     N    +D + G+F C +PG+Y+ + ++ T   K+  + +    + 
Sbjct: 125 IPN--MPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHI-TVYMKDVKVSLFKKDKA 181

Query: 189 AAVLYAQPSERSVMQAQ-SLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLV 246
               Y Q  E +V QA  S++L L  GD VW++++     N +Y ++ D   TF+G L+
Sbjct: 182 MLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADN-DNDSTFTGFLL 239


>gi|5729785 complement component 1, q subcomponent-like 1 [Homo
           sapiens]
          Length = 258

 Score = 84.3 bits (207), Expect = 9e-17
 Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 6   LLLLALLLPVGAWPGLPRR--PCVHCCR------PAWPPGPYARVSDRDLWRGDLWRGLP 57
           LL+L +L+PV    G P      +  CR      PA  PG  AR    D        G P
Sbjct: 2   LLVLVVLIPVLVSSGGPEGHYEMLGTCRMVCDPYPARGPGAGARTDGGDALSEQ--SGAP 59

Query: 58  RVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYA 117
              P+  ++  +G+ G  G  G  G  G  GPPG  G  G +G+ G+ GPPG        
Sbjct: 60  P--PSTLVQGPQGKPGRTGKPGPPGPPGDPGPPGPVGPPGEKGEPGKPGPPGLPGAGGSG 117

Query: 118 AFS---------VGRREGL-HSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLS 167
           A S         V    GL +  + ++ + FD  + NL   +D A+G+F C +PG YF +
Sbjct: 118 AISTATYTTVPRVAFYAGLKNPHEGYEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFT 177

Query: 168 LNV--HTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQA-QSLMLLLAAGDAVWVRMFQR 224
            +V     +    +  +  N +  A   AQ ++++   A  S++L L AGD V++++   
Sbjct: 178 YHVLMRGGDGTSMWADLCKNGQVRASAIAQDADQNYDYASNSVILHLDAGDEVFIKL--- 234

Query: 225 DRDNAIYGEHGDLYITFSGHLV 246
           D   A +G + + Y TFSG ++
Sbjct: 235 DGGKA-HGGNSNKYSTFSGFII 255


>gi|58801559 complement component 1, q subcomponent-like 3 [Homo
           sapiens]
          Length = 255

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 27/212 (12%)

Query: 54  RGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQV------GP 107
           RGL +  PT     ++G KGEAG  G+AG  G  G PG  G  G  G+KG+       GP
Sbjct: 49  RGLMQSLPTF----IQGPKGEAGRPGKAGPRGPPGEPGPPGPMGPPGEKGEPGRQGLPGP 104

Query: 108 PGAACRRAYAAFSVGRREGL----------HSSDHFQAVPFDTELVNLDGAFDLAAGRFL 157
           PGA    A  A S      +             + ++ + FD  + NL   +D   G+F 
Sbjct: 105 PGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFT 164

Query: 158 CTVPGVYFLSLNV--HTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQA-QSLMLLLAAG 214
           C++PG+YF + +V     +    +  +  N +  A   AQ ++++   A  S++L L  G
Sbjct: 165 CSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPG 224

Query: 215 DAVWVRMFQRDRDNAIYGEHGDLYITFSGHLV 246
           D V++++   D   A +G + + Y TFSG ++
Sbjct: 225 DEVYIKL---DGGKA-HGGNNNKYSTFSGFII 252


>gi|7705753 complement component 1, q subcomponent, A chain
           precursor [Homo sapiens]
          Length = 245

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRR 114
           G P +R    I+ LKG++GE G  G  G+ G  GP G  G +G  G KG  G PG    +
Sbjct: 55  GAPGIRT--GIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGTKGSPGNIKDQ 112

Query: 115 AYAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV-HTW 173
              AFS  RR      +    V FDT + N +  +   +GRF+CTVPG Y+ +  V   W
Sbjct: 113 PRPAFSAIRRNPPMGGN---VVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQW 169

Query: 174 NYKETYLHIMLNRRPAAVLYAQPSERSVMQAQS--LMLLLAAGDAVWVRMFQRDRDNAIY 231
               + +     +   ++ +   + + + Q  S  ++L L  GD VWV   ++D      
Sbjct: 170 EICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWV---EKDPKKGHI 226

Query: 232 GEHGDLYITFSGHLVKPAA 250
            +  +    FSG L+ P+A
Sbjct: 227 YQGSEADSVFSGFLIFPSA 245



 Score = 34.7 bits (78), Expect = 0.081
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 78  RGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           R   G+ G+ G PG RG  G +G++G+ G PG
Sbjct: 27  RAPDGKKGEAGRPGRRGRPGLKGEQGEPGAPG 58



 Score = 31.6 bits (70), Expect = 0.69
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 85  GKEGPPGARGLQGRRGQKGQVGPPGA 110
           GK+G  G  G +GR G KG+ G PGA
Sbjct: 31  GKKGEAGRPGRRGRPGLKGEQGEPGA 56


>gi|65301115 C1q and tumor necrosis factor related protein 9 [Homo
           sapiens]
          Length = 333

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHS 129
           G  G+ G +G AG +G +G PG RG++G +G +G+ G  G       +AF+VG       
Sbjct: 155 GPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKF 214

Query: 130 SDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPA 189
                 + FD  L N    +D AAG+F C + GVY+ + ++  ++     + + L +   
Sbjct: 215 PSSDMPIKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRN---VQVSLVKNGV 271

Query: 190 AVLYAQPSERSVMQAQS--LMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLV 246
            +L+ + +  S     S  ++L L  GD VW+++   +R N ++ +  D   TF+G L+
Sbjct: 272 KILHTKDAYMSSEDQASGGIVLQLKLGDEVWLQVTGGERFNGLFADEDD-DTTFTGFLL 329



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 63  IDIEILKGEKGEAGVRGRAGRSGKEGPPGARGL------QGRRGQKGQVGPPG 109
           ++ + +KG++G  G  G+ G  G  GP G +GL      QG++G KG VGP G
Sbjct: 82  VEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTG 134



 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GEKGE G  G+    G +G  G+RG  G+ G KG  GP G
Sbjct: 71  GEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMG 110



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 15/58 (25%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGL---------------QGRRGQKGQVGPPGAA 111
           KG+KG+AG  GR G  GK+G  G +G                QG RG  G+ GP G A
Sbjct: 49  KGDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLA 106



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G  G  G +G  G +G+ G PG+ G  G  G+KG+ G  G
Sbjct: 39  LPGRDGRDGAKGDKGDAGEPGRPGSPGKDGTSGEKGERGADG 80



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           +G  G  G  G  G  G++G  GA+G +G  G+ G+ G PG
Sbjct: 25  QGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGRPGSPG 65


>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
           sapiens]
          Length = 333

 Score = 78.6 bits (192), Expect = 5e-15
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHS 129
           G  G+ G +G AG +G +G PG RG++G +G +G+ G  G       +AF+VG       
Sbjct: 155 GPIGKPGPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKF 214

Query: 130 SDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPA 189
                 + FD  L N    +D A G+F C + GVY+ + ++  ++     + + L +   
Sbjct: 215 PSSDVPIKFDKILYNEFNHYDTAVGKFTCHIAGVYYFTYHITVFSRN---VQVSLVKNGV 271

Query: 190 AVLYAQPSERSV--MQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLV 246
            +L+ + +  S     + S++L L  GD +W+++   +R N ++ +  D   TF+G L+
Sbjct: 272 KILHTRDAYVSSEDQASGSIVLQLKLGDEMWLQVTGGERFNGLFADEDD-DTTFTGFLL 329



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 63  IDIEILKGEKGEAGVRGRAGRSGKEGPPGARGL------QGRRGQKGQVGPPG 109
           ++ + +KG++G  G  G+ G  G  GP G +GL      QG++G KG VGP G
Sbjct: 82  VEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTG 134



 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GEKGE G  G+    G +G  G+RG  G+ G KG  GP G
Sbjct: 71  GEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMG 110



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           G+ G +G +G  G  GK    G +G QG RG  G+ GP G A
Sbjct: 65  GKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLA 106



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G  G  G +G  G +G+ G PG+ G  G  G+KG+ G  G
Sbjct: 39  LPGRDGRDGAKGDKGDAGEPGCPGSPGKDGTSGEKGERGADG 80



 Score = 32.7 bits (73), Expect = 0.31
 Identities = 16/41 (39%), Positives = 22/41 (53%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           +G  G  G  G  G  G++G  GA+G +G  G+ G  G PG
Sbjct: 25  QGHPGIPGNPGHNGLPGRDGRDGAKGDKGDAGEPGCPGSPG 65


>gi|56786155 complement component 1, q subcomponent, C chain
           precursor [Homo sapiens]
          Length = 245

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 73/257 (28%), Positives = 110/257 (42%), Gaps = 41/257 (15%)

Query: 6   LLLLALLLP-----------VGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWR 54
           LLLL LLLP           +   PGLP  P          PGP               +
Sbjct: 15  LLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGL--PGP---------------K 57

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRR 114
           G P +     I   KG+KGE G+ G  G++G  GPPG  G+ G  G  G+ G  G   ++
Sbjct: 58  GEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQK 117

Query: 115 AYAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV-HTW 173
             + F+V R+     + +   + F+  L N  G +D + G+F C VPG+Y+   +  HT 
Sbjct: 118 FQSVFTVTRQTHQPPAPN-SLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTA 176

Query: 174 NYKETYLHIMLNRRPAAVL--YAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIY 231
           N     L ++L R    V+      S+ + + +  ++L L  G+ VW+ +        I 
Sbjct: 177 N-----LCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQ 231

Query: 232 GEHGDLYITFSGHLVKP 248
           G        FSG L+ P
Sbjct: 232 GSDS----VFSGFLLFP 244


>gi|166235903 complement component 1, q subcomponent, C chain
           precursor [Homo sapiens]
          Length = 245

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 73/257 (28%), Positives = 110/257 (42%), Gaps = 41/257 (15%)

Query: 6   LLLLALLLP-----------VGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWR 54
           LLLL LLLP           +   PGLP  P          PGP               +
Sbjct: 15  LLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGL--PGP---------------K 57

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRR 114
           G P +     I   KG+KGE G+ G  G++G  GPPG  G+ G  G  G+ G  G   ++
Sbjct: 58  GEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQK 117

Query: 115 AYAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV-HTW 173
             + F+V R+     + +   + F+  L N  G +D + G+F C VPG+Y+   +  HT 
Sbjct: 118 FQSVFTVTRQTHQPPAPN-SLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTA 176

Query: 174 NYKETYLHIMLNRRPAAVL--YAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIY 231
           N     L ++L R    V+      S+ + + +  ++L L  G+ VW+ +        I 
Sbjct: 177 N-----LCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQ 231

Query: 232 GEHGDLYITFSGHLVKP 248
           G        FSG L+ P
Sbjct: 232 GSDS----VFSGFLLFP 244


>gi|94818738 C1q and tumor necrosis factor related protein 2 [Homo
           sapiens]
          Length = 330

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 19/189 (10%)

Query: 70  GEKGEAGVRGRAG---------RSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFS 120
           G KG+AG  GRAG           GK G PG +G +G++G+ G  GP         +AFS
Sbjct: 139 GPKGKAGAIGRAGPRGPKGVNGTPGKHGTPGKKGPKGKKGEPGLPGPCSCGSGHTKSAFS 198

Query: 121 VGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYL 180
           V   +          + FD  L+N  G ++ ++G+F+C VPG+Y+ + ++   N K   +
Sbjct: 199 VAVTKSYPRER--LPIKFDKILMNEGGHYNASSGKFVCGVPGIYYFTYDITLAN-KHLAI 255

Query: 181 HIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYIT 240
            ++ N +     +   +    + + S +L L  GD VW+++F  +++   Y    D Y T
Sbjct: 256 GLVHNGQYRIRTFDANTGNHDVASGSTILALKQGDEVWLQIFYSEQNGLFY----DPYWT 311

Query: 241 ---FSGHLV 246
              F+G L+
Sbjct: 312 DSLFTGFLI 320



 Score = 29.6 bits (65), Expect = 2.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 85  GKEGPPGARGLQGRRGQKGQVGPPG 109
           G +GPPG  G  G  G  G++G PG
Sbjct: 85  GPQGPPGPPGAPGPSGMMGRMGFPG 109


>gi|14149712 C1q and tumor necrosis factor related protein 5
           precursor [Homo sapiens]
          Length = 243

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 60/185 (32%), Positives = 80/185 (43%), Gaps = 14/185 (7%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAY---AAFSVGRREG 126
           G  G  G  G  G  G+ G PG RG  G RG+ G  GP G A   +    +AFS  R E 
Sbjct: 54  GRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKRSES 113

Query: 127 LHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNR 186
                    +PFD  LVN  G +D   G+F C VPGVY+ +  VH   Y+ +    ++  
Sbjct: 114 RVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFA--VHATVYRASLQFDLVKN 171

Query: 187 RPAAVLYAQ-----PSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITF 241
             +   + Q     P   S+  +   M+ L   D VWV++   D          D   TF
Sbjct: 172 GESIASFFQFFGGWPKPASL--SGGAMVRLEPEDQVWVQVGVGDYIGIYASIKTD--STF 227

Query: 242 SGHLV 246
           SG LV
Sbjct: 228 SGFLV 232


>gi|13569919 C1q and tumor necrosis factor related protein 3 isoform
           a [Homo sapiens]
          Length = 246

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAA------FSV 121
           + G  G  G  G  G  G +G  G +G  G RG++GQ GP G    + Y         + 
Sbjct: 64  IPGNHGNNGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKG---EKGYPGIPPELQIAF 120

Query: 122 GRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTW-NYKETYL 180
                 H S+    + F +   N+   FD+  GRF   V GVYF + ++    + +E Y+
Sbjct: 121 MASLATHFSNQNSGIIFSSVETNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYV 180

Query: 181 HIMLNRRPAAVLYA-QPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYI 239
           ++M N      +Y+ +   +S   +   +L LA GD VW+RM     + A++G+H   + 
Sbjct: 181 YLMHNGNTVFSMYSYEMKGKSDTSSNHAVLKLAKGDEVWLRM----GNGALHGDH-QRFS 235

Query: 240 TFSGHLV 246
           TF+G L+
Sbjct: 236 TFAGFLL 242


>gi|62739183 C1q and tumor necrosis factor related protein 3 isoform
           b [Homo sapiens]
          Length = 319

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 16/187 (8%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAA------FSV 121
           + G  G  G  G  G  G +G  G +G  G RG++GQ GP G    + Y         + 
Sbjct: 137 IPGNHGNNGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKG---EKGYPGIPPELQIAF 193

Query: 122 GRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTW-NYKETYL 180
                 H S+    + F +   N+   FD+  GRF   V GVYF + ++    + +E Y+
Sbjct: 194 MASLATHFSNQNSGIIFSSVETNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYV 253

Query: 181 HIMLNRRPAAVLYA-QPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYI 239
           ++M N      +Y+ +   +S   +   +L LA GD VW+RM     + A++G+H   + 
Sbjct: 254 YLMHNGNTVFSMYSYEMKGKSDTSSNHAVLKLAKGDEVWLRM----GNGALHGDH-QRFS 308

Query: 240 TFSGHLV 246
           TF+G L+
Sbjct: 309 TFAGFLL 315


>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
           sapiens]
          Length = 287

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 76/290 (26%), Positives = 120/290 (41%), Gaps = 46/290 (15%)

Query: 1   MAAPALLLLALLL---PVGAWPGLPRRPCVHCCRP------AWPPGPYARVSDRDLWRGD 51
           MA   L+ + LLL   P GA        C   C P        PPG  A+         +
Sbjct: 1   MALGLLIAVPLLLQAAPRGAAHYEMMGTCRMICDPYTAAPGGEPPGAKAQPPGPSTAALE 60

Query: 52  LWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG-- 109
           + + L    P   I+  KG+ G  G  G  G  G+ GPPG RG  G +G  G+ G PG  
Sbjct: 61  VMQDLSANPPPPFIQGPKGDPGRPGKPGPRGPPGEPGPPGPRGPPGEKGDSGRPGLPGLQ 120

Query: 110 ---------------------------AACRRAYAAFSVGRREGLHSS-DHFQAVPFDTE 141
                                      +A    ++   +    GL S  + ++ + FD  
Sbjct: 121 LTAGTASGVGVVGGGAGVGGDSEGEVTSALSATFSGPKIAFYVGLKSPHEGYEVLKFDDV 180

Query: 142 LVNLDGAFDLAAGRFLCTVPGVYFLSLNV--HTWNYKETYLHIMLNRRPAAVLYAQPSER 199
           + NL   +D   G+F C V G+YF + ++     +    +  +  N +  A   AQ +++
Sbjct: 181 VTNLGNHYDPTTGKFSCQVRGIYFFTYHILMRGGDGTSMWADLCKNGQVRASAIAQDADQ 240

Query: 200 SVMQA-QSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
           +   A  S++L L +GD V+V++   D   A +G + + Y TFSG L+ P
Sbjct: 241 NYDYASNSVVLHLDSGDEVYVKL---DGGKA-HGGNNNKYSTFSGFLLYP 286


>gi|122937273 hypothetical protein LOC131149 [Homo sapiens]
          Length = 477

 Score = 71.2 bits (173), Expect = 8e-13
 Identities = 66/227 (29%), Positives = 97/227 (42%), Gaps = 64/227 (28%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPP------------------- 108
           +KGEKG  G  G  G+SG+ G PGA+G  G +G+KG++GPP                   
Sbjct: 261 MKGEKGSKGDSGMEGKSGRNGLPGAKGDPGIKGEKGELGPPGLLGPTGPKGDIGNKGVRG 320

Query: 109 --------------GAACRRAYAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAG 154
                         G   R   +AFS G  +     +    + F+  L N  G +    G
Sbjct: 321 PTGKKGSRGFKGSKGELARVPRSAFSAGLSKPFPPPN--IPIKFEKILYNDQGNYSPVTG 378

Query: 155 RFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAV-LYAQPSE----------RSVMQ 203
           +F C++PG Y  S             HI +  RPA + L AQ  +          + + Q
Sbjct: 379 KFNCSIPGTYVFS------------YHITVRGRPARISLVAQNKKQFKSRETLYGQEIDQ 426

Query: 204 AQSLMLL-LAAGDAVWVRMFQRDRD-NAIYGEHGDLYITFSGHLVKP 248
           A  L++L L+AGD VW+ +    +D N +Y    D  I F+G L+ P
Sbjct: 427 ASLLVILKLSAGDQVWLEV---SKDWNGVYVSAEDDSI-FTGFLLYP 469



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 21/40 (52%), Positives = 24/40 (60%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GE G+ G +G AG  G  GPPG  G QG RG KG+ G  G
Sbjct: 116 GETGQPGPKGEAGNLGIPGPPGVVGPQGPRGYKGEKGLKG 155



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGR---RGQKGQVGPPGAAC 112
           LKGE+G+ GV G  G+ G +G PG +G +G     G KGQ G  G  C
Sbjct: 153 LKGERGDQGVPGYPGKPGAQGEPGPKGDKGNIGLGGVKGQKGSKGDTC 200



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGEKG  G RG  G  G  G PGA+G  G +G KG +G  G
Sbjct: 148 KGEKGLKGERGDQGVPGYPGKPGAQGEPGPKGDKGNIGLGG 188



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 19/94 (20%)

Query: 26  CVHCCRPA----------WPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEA 75
           C  CC P             PGP           G+L  G+P     +  +  +G KGE 
Sbjct: 101 CCDCCSPVPGQKGEPGETGQPGPKGEA-------GNL--GIPGPPGVVGPQGPRGYKGEK 151

Query: 76  GVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G++G  G  G  G PG  G QG  G KG  G  G
Sbjct: 152 GLKGERGDQGVPGYPGKPGAQGEPGPKGDKGNIG 185



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 72  KGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G +G  G  G  G PGA+G +G  G+KG++G  G
Sbjct: 205 KGEKGDQGAMGSPGLHGGPGAKGEKGEMGEKGEMGDKG 242



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGA 110
           G+ GE G +G+ G  G +G  G++G  G  G+ G+ G PGA
Sbjct: 245 GDSGERGGKGQKGEGGMKGEKGSKGDSGMEGKSGRNGLPGA 285



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 68  LKGEKGEAG------VRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           +KG+KG  G       +G  G  G  G PG  G  G +G+KG++G  G
Sbjct: 189 VKGQKGSKGDTCGNCTKGEKGDQGAMGSPGLHGGPGAKGEKGEMGEKG 236



 Score = 36.2 bits (82), Expect = 0.028
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G  G  G  G +G  G  G +G +GQKG+ G  G
Sbjct: 224 GAKGEKGEMGEKGEMGDKGCCGDSGERGGKGQKGEGGMKG 263



 Score = 35.8 bits (81), Expect = 0.037
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KG+KG  G+ G  G+ G +G       +G +G +G +G PG
Sbjct: 178 KGDKGNIGLGGVKGQKGSKGDTCGNCTKGEKGDQGAMGSPG 218



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 18/42 (42%), Positives = 20/42 (47%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G  G  G +G  G  G+ G  G  G  G RG KGQ G  G
Sbjct: 219 LHGGPGAKGEKGEMGEKGEMGDKGCCGDSGERGGKGQKGEGG 260



 Score = 29.3 bits (64), Expect = 3.4
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 77  VRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREGLHSSDHFQAV 136
           V G+ G  G+ G PG +G  G  G  G  G  G    R Y        +GL      Q V
Sbjct: 108 VPGQKGEPGETGQPGPKGEAGNLGIPGPPGVVGPQGPRGYKG-----EKGLKGERGDQGV 162

Query: 137 P 137
           P
Sbjct: 163 P 163


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 38/212 (17%)

Query: 70  GEKGEAGV--RGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAA--FSVGRRE 125
           G  G AG+  +G  G +G  GPPG RG  G  G  G  GPPG   +          G+R 
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRP 532

Query: 126 GLHSSDHFQA--------------------------VPFDTELVNLDGAFDLAAGRFLCT 159
            L  +    A                          +PFD  L N    +D   G F C 
Sbjct: 533 SLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQ 592

Query: 160 VPGVYFLSLNVHTWNYKETYLHIML--NRRPAAVLYAQPSERSVMQAQ-SLMLLLAAGDA 216
           +PG+Y+ S +VH    K T++ + L  N  P    Y + ++  + QA  S ++ L   D 
Sbjct: 593 IPGIYYFSYHVHV---KGTHVWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQ 649

Query: 217 VWVRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
           VW+++   + +     E+  ++ +FSG LV P
Sbjct: 650 VWLQLPNAESNGLYSSEY--VHSSFSGFLVAP 679



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           LKGE+G AG+ G  G  G++GP G  G  G  G  G +GP G
Sbjct: 306 LKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQG 347



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGP---PGARGLQGRRGQKGQVGPPGAA 111
           GLP        + + G  GEAG RG  G  G  GP   PG  G  G +G  G  GPPG A
Sbjct: 419 GLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPA 478



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G KG+ GV G  G  G  GP GA+G+ G  G+ G  G PG
Sbjct: 405 LPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPG 446



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 70  GEKGEAGVRGRAGRSGK-----EGPPGARGLQGRRGQKGQVGPPGAACR 113
           GEKG  GV G  G+ G+      G PG RGL G +G  G  GPPG   R
Sbjct: 174 GEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKR 222



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 69  KGEKGEAGVRGRAGRSGK---EGPPGARGLQGRRGQKGQVGPPG 109
           KGE+G  G  G+ G  GK   +GP G  GL G +G  G  GPPG
Sbjct: 376 KGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPG 419



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           G+ G  G RG  G  G  GPPG +G  G RG +G +G PGAA
Sbjct: 229 GQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEG-IGKPGAA 269



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/40 (50%), Positives = 22/40 (55%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G  G  G+ G  GPPG  G QG +G  G  G PG
Sbjct: 320 GAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPG 359



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLW--RGDLW-RGLPRVRPTIDIEILKGEKGEA 75
           PGLP  P          PG   +  +R  +  +GD+   GLP  R         G  G  
Sbjct: 94  PGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPR---------GPPGPP 144

Query: 76  GVRGRAGRS-----GKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRREG 126
           G+ G AG S     G++GP GA G +G  G+KG  G PG   ++    +    R G
Sbjct: 145 GIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPG 200



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 69  KGEKGEAGVRGRAGRSGK------EGPPGARGLQGRRGQKGQVGPPGAA 111
           KGE+G AG+ G+ G +G       +GP G  G  G  G KG+ GP G A
Sbjct: 322 KGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPA 370



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEG--P 89
           P  PPGP     +R    G    G P          + G KG  G  G AG  G  G   
Sbjct: 245 PIGPPGPQGPPGER----GPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGK 300

Query: 90  PGARGLQGRRGQKGQVGPPGA 110
           PG  GL+G RG  G  G PGA
Sbjct: 301 PGLPGLKGERGPAGLPGGPGA 321



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           +KG++G  G  G  G  G +GPPG RG +G  G+ G  G PG
Sbjct: 233 IKGDRGFPGEMGPIGPPGPQGPPGERGPEG-IGKPGAAGAPG 273



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 9/57 (15%)

Query: 54  RGLPRVR-PTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           RGLP  + PT       G  G  GV G+ G +G  G PG +G +G  G+ G +GPPG
Sbjct: 202 RGLPGPQGPT-------GPSGPPGV-GKRGENGVPGQPGIKGDRGFPGEMGPIGPPG 250



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/41 (46%), Positives = 22/41 (53%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G AG  G  G  G+ G PG+ G  G  G+ G  GP G
Sbjct: 361 KGETGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKG 401



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/40 (47%), Positives = 20/40 (50%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G RG  G  GK G PG  GL G +G  G  GP G
Sbjct: 371 GYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKG 410



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 54  RGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQG--------RRGQKGQV 105
           RG P  +    +  + G+KGE G  G  GR G+ G PG +G  G        +RG+ G  
Sbjct: 170 RGFPGEKGAPGVPGMNGQKGEMGY-GAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVP 228

Query: 106 GPPGAACRRAY 116
           G PG    R +
Sbjct: 229 GQPGIKGDRGF 239



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KG  G  G+ G  G +G  GP G  G +G RG  G  G PG
Sbjct: 349 KGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPG 389



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G AG RG  G SG  G PG  G  G +G+ G  GPPG
Sbjct: 63  GPPGPAGPRGHPGPSGPPGKPGY-GSPGLQGEPGLPGPPG 101



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRR---GQKGQVGPPG 109
           G+ G  G++G  G +G  G PGA+G QG     G+ G  GPPG
Sbjct: 299 GKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPG 341



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           + G  G  G +G  G +G  G PGA+G +G  G  G+ G PG
Sbjct: 351 IPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGYPG 392



 Score = 35.4 bits (80), Expect = 0.048
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGA 110
           G  G+ G+ G  G  G  GP G  G+ G  G  G VGP GA
Sbjct: 389 GYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA 429



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAY 116
           G +G  G+ G  G  G +G  G  G  G  G KG+ G PG+  +  Y
Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSDGKPGY 390



 Score = 31.2 bits (69), Expect = 0.90
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 85  GKEGPPGARGLQGRRGQKGQVGPPG 109
           G++G PG  G  G RG  G  GPPG
Sbjct: 57  GEQGTPGPPGPAGPRGHPGPSGPPG 81



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 56  LPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVG 106
           LP  +    I      KG A VRG  G  G  GP G RG  G  G  G+ G
Sbjct: 35  LPNTKTQFFIPYTIKSKGIA-VRGEQGTPGPPGPAGPRGHPGPSGPPGKPG 84



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 82  GRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  GPPG  G +G  G  G  G PG
Sbjct: 57  GEQGTPGPPGPAGPRGHPGPSGPPGKPG 84


>gi|13994280 C1q and tumor necrosis factor related protein 7 isoform
           b [Homo sapiens]
          Length = 289

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 47/256 (18%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGLP  P       +  PGP+ R+            GLP  R   D    KGEKGE G  
Sbjct: 37  PGLPGPPGPPGANGS--PGPHGRI------------GLPG-RDGRDGR--KGEKGEKGTA 79

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG--------------------------AAC 112
           G  G++G  G  G +G QG  G+KG +GP G                            C
Sbjct: 80  GLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDPGLPGVC 139

Query: 113 RRAYAAFSVGRREGLHSSDHFQAVP--FDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV 170
           R            G+ +S   + +P  F+  L N    ++ A G+F+C  PG+Y+ S ++
Sbjct: 140 RCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDI 199

Query: 171 HTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAI 230
              N K   + ++ N +     +   +    + + S ++ L   D VW+ +F  D+ N +
Sbjct: 200 TLAN-KHLAIGLVHNGQYRIKTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQ-NGL 257

Query: 231 YGEHGDLYITFSGHLV 246
           + + G     FSG L+
Sbjct: 258 FSDPGWADSLFSGFLL 273


>gi|206597454 C1q and tumor necrosis factor related protein 7
           isoform b [Homo sapiens]
          Length = 289

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 47/256 (18%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGLP  P       +  PGP+ R+            GLP  R   D    KGEKGE G  
Sbjct: 37  PGLPGPPGPPGANGS--PGPHGRI------------GLPG-RDGRDGR--KGEKGEKGTA 79

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG--------------------------AAC 112
           G  G++G  G  G +G QG  G+KG +GP G                            C
Sbjct: 80  GLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDPGLPGVC 139

Query: 113 RRAYAAFSVGRREGLHSSDHFQAVP--FDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV 170
           R            G+ +S   + +P  F+  L N    ++ A G+F+C  PG+Y+ S ++
Sbjct: 140 RCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDI 199

Query: 171 HTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAI 230
              N K   + ++ N +     +   +    + + S ++ L   D VW+ +F  D+ N +
Sbjct: 200 TLAN-KHLAIGLVHNGQYRIKTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQ-NGL 257

Query: 231 YGEHGDLYITFSGHLV 246
           + + G     FSG L+
Sbjct: 258 FSDPGWADSLFSGFLL 273


>gi|206597452 C1q and tumor necrosis factor related protein 7
           isoform a [Homo sapiens]
          Length = 296

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 47/256 (18%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGLP  P       +  PGP+ R+            GLP  R   D    KGEKGE G  
Sbjct: 44  PGLPGPPGPPGANGS--PGPHGRI------------GLPG-RDGRDGR--KGEKGEKGTA 86

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG--------------------------AAC 112
           G  G++G  G  G +G QG  G+KG +GP G                            C
Sbjct: 87  GLRGKTGPLGLAGEKGDQGETGKKGPIGPEGEKGEVGPIGPPGPKGDRGEQGDPGLPGVC 146

Query: 113 RRAYAAFSVGRREGLHSSDHFQAVP--FDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNV 170
           R            G+ +S   + +P  F+  L N    ++ A G+F+C  PG+Y+ S ++
Sbjct: 147 RCGSIVLKSAFSVGITTSYPEERLPIIFNKVLFNEGEHYNPATGKFICAFPGIYYFSYDI 206

Query: 171 HTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAI 230
              N K   + ++ N +     +   +    + + S ++ L   D VW+ +F  D+ N +
Sbjct: 207 TLAN-KHLAIGLVHNGQYRIKTFDANTGNHDVASGSTVIYLQPEDEVWLEIFFTDQ-NGL 264

Query: 231 YGEHGDLYITFSGHLV 246
           + + G     FSG L+
Sbjct: 265 FSDPGWADSLFSGFLL 280


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 41/231 (17%)

Query: 54  RGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAAC- 112
           +GLP ++    +    GE G AG  G AG +G  G PG+ G+ G  G  G  GPPGA   
Sbjct: 477 QGLPGLKGEPGLPGPPGE-GRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGA 535

Query: 113 ----------------------RRAYAAFSVGRREGLHSSDHFQAV------------PF 138
                                 +     F +G     H++  F AV             F
Sbjct: 536 FDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSA-HATPAFTAVLTSPFPASGMPVKF 594

Query: 139 DTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSE 198
           D  L N    ++ A G F C V GVY+ + +VH       ++ +  N  PA   Y +  +
Sbjct: 595 DRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHV-KGTNVWVALYKNNVPATYTYDEYKK 653

Query: 199 RSVMQAQ-SLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
             + QA    +L L   D VWV+M   D+ N +Y     ++ +FSG L+ P
Sbjct: 654 GYLDQASGGAVLQLRPNDQVWVQM-PSDQANGLYSTE-YIHSSFSGFLLCP 702



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRR---GQKGQVGPPG 109
           GE GE G +G  G  G  G PG+ GL GRR   G KG+ GP G
Sbjct: 343 GEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGG 385



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 20/96 (20%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGL  +P      PA PPG ++R+            G P +   +      G +GE G+R
Sbjct: 105 PGLHGQP-----GPAGPPG-FSRMGKA---------GPPGLPGKVGPPGQPGLRGEPGIR 149

Query: 79  GRAGRSGKEGPPGARG-----LQGRRGQKGQVGPPG 109
           G  G  G  GPPG  G     + G+ G +G  GPPG
Sbjct: 150 GDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPG 185



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 20/43 (46%), Positives = 23/43 (53%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           +GE GE G  G  G  G  GPPG  G  G  G++G  GP G A
Sbjct: 339 RGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEA 381



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 19/40 (47%), Positives = 23/40 (57%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GE+G  G+ G  G  G  G PG RG  G +G+ G  GPPG
Sbjct: 349 GEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPG 388



 Score = 41.2 bits (95), Expect = 9e-04
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 17/95 (17%)

Query: 15  VGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGE 74
           +G  PGLP    +   R   PPGP          +G+   G P   P I     +G++G 
Sbjct: 356 LGGPPGLPGSAGLPGRRG--PPGP----------KGEAGPGGPPGVPGI-----RGDQGP 398

Query: 75  AGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           +G+ G+ G  G+ G PGA G  G  G KG+ G  G
Sbjct: 399 SGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTG 433



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGA 110
           +G  G  G +G  G  G+ GPPG RGL+G  G  GQ G PGA
Sbjct: 178 QGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNG-VGQPGLPGA 218



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 76  GVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GV G AG  G +GP GA+G  G RG  G +GP G
Sbjct: 281 GVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTG 314



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G++GE G  G  G  G +G  G  GL G  G  G+ GPPG
Sbjct: 335 LLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPG 376



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 54  RGLPRVRPTIDIEILKGEKGEAGVRGRAG-----RSGKEGPPGARGLQGRRGQKGQVGPP 108
           RG P +R     + L+G  G  G+ G +G     + G +G PG  G QG  G +G+ GPP
Sbjct: 143 RGEPGIRGD---QGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPP 199

Query: 109 G 109
           G
Sbjct: 200 G 200



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G+ G  G+ G  G  G+ GPPG  G +G  G  G  GPPG
Sbjct: 237 GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPG 276



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 19/42 (45%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G+ G  G  G  G  G  GP G +GL G +G+ G  GPPG
Sbjct: 452 LPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPG 493



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           KG++G AGV G  G  G+ G  G  G QG +G  G  G PG+A
Sbjct: 324 KGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSA 366



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/42 (45%), Positives = 22/42 (52%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           L G KG+ G  G  G  G  G PG  G  G +G +G  GPPG
Sbjct: 320 LPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPG 361



 Score = 38.9 bits (89), Expect = 0.004
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G+ G+RG +G  G +GP G  G QG  G KG+ G PG
Sbjct: 451 GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPG 490



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 72  KGEAGVRGRAGRSGKEGPPG-----ARGLQGRRGQKGQVGPPG 109
           KGE G  G+ G  G  GPPG       G  G  GQ G  GPPG
Sbjct: 76  KGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPG 118



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRR 114
           G  G  G  G  G +G  GPPG  G++G +G  G  G PG    R
Sbjct: 367 GLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGER 411



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PG P +P      P  PPGP        + +  L  G P          + G+ G  G+ 
Sbjct: 79  PGPPGKP-----GPRGPPGPPGFPGKPGMGKPGL-HGQPGPAGPPGFSRM-GKAGPPGLP 131

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G+ G  G+ G  G  G++G +G +G  GPPG
Sbjct: 132 GKVGPPGQPGLRGEPGIRGDQGLRGPPGPPG 162



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 13/55 (23%)

Query: 68  LKGEKG--EAGVRGRAGRSGKEGP-----------PGARGLQGRRGQKGQVGPPG 109
           LKG+ G  + G+ G  G+ G  GP           PG  GL G  G KG+ GPPG
Sbjct: 204 LKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPG 258



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 69  KGEKGEAGVRGRAGRSGKEGP-----------PGARGLQGRRGQKGQVGPPG 109
           KGE G  GV G  G  G  GP           PGA GL G +G  G  G PG
Sbjct: 251 KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPG 302



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G +G  G +G+ G PG  G  G++G  G  G PG
Sbjct: 418 GPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPG 457



 Score = 35.8 bits (81), Expect = 0.037
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQ--VGPPG 109
           + G+ G  GV G  G  G+ GP G  G  G RG KG   VG PG
Sbjct: 171 IPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPG 214



 Score = 35.8 bits (81), Expect = 0.037
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 14/54 (25%)

Query: 70  GEKGEAGVRGRAGR--------------SGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G RG  G                G  GP G  GL G RG+ G+ G PG
Sbjct: 296 GAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPG 349



 Score = 35.4 bits (80), Expect = 0.048
 Identities = 19/40 (47%), Positives = 20/40 (50%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G  GR G  G  G  G +G  G  GQ G  GP G
Sbjct: 424 GPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSG 463



 Score = 35.0 bits (79), Expect = 0.062
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  GV G  G+ G  G PG  GL+G  G  G  GP G
Sbjct: 433 GRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAG 472



 Score = 34.7 bits (78), Expect = 0.081
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G AG  G+ G  G  G PG RG  G  G +G  GP G
Sbjct: 436 GGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIG 475



 Score = 34.7 bits (78), Expect = 0.081
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G+ G  G  G+ G  GP G  GLQG  G  G  G PG
Sbjct: 442 GALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPG 481



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 14/54 (25%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGAR--------------GLQGRRGQKGQVGPPG 109
           G  G AG+ G  G SG +G PG R              GL G +G +G  G PG
Sbjct: 281 GVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPG 334



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQ------KGQVGPPGAA 111
           +G  G  G+ G AG  G+ GPPG +G  G  G       +G  GP G A
Sbjct: 354 QGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA 402



 Score = 33.5 bits (75), Expect = 0.18
 Identities = 22/56 (39%), Positives = 25/56 (44%)

Query: 54  RGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           RGLP           KGE G  G  G  G +G  G  G  GL G+ G +G  G PG
Sbjct: 411 RGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPG 466



 Score = 32.7 bits (73), Expect = 0.31
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           +GE G  G RG  G +G  G PG  G  G+ G  G  G PG A
Sbjct: 193 QGEPGPPGDRGLKGDNGV-GQPGLPGAPGQGGAPGPPGLPGPA 234



 Score = 31.6 bits (70), Expect = 0.69
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGAR------GLQGRRGQKGQVGPPG 109
           G  G AG+ G+ G  G  G PG +      G+ G RG+ G VGP G
Sbjct: 229 GLPGPAGL-GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKG 273


>gi|87298828 complement component 1, q subcomponent, B chain
           precursor [Homo sapiens]
          Length = 253

 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 25/202 (12%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGP------PGAACRRAYA---- 117
           +KGEKG  G+ G  G  G++G PG  G  G+ G KG +GP      PGA   +  +    
Sbjct: 58  IKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYK 117

Query: 118 -----AFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHT 172
                AFS  R   +      Q + FD  + N++  ++  +G+F C VPG+Y+ +   H 
Sbjct: 118 ATQKIAFSATRTINV-PLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFT--YHA 174

Query: 173 WNYKETYLHIMLNRRPA--AVLYAQPSERSV-MQAQSLMLLLAAGDAVWVRMFQRDRDNA 229
            +     +++M  R  A   V +   +  +  +    ++L L  G+ V++   Q    N+
Sbjct: 175 SSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFL---QATDKNS 231

Query: 230 IYGEHGDLYITFSGHLVKPAAE 251
           + G  G   I FSG L+ P  E
Sbjct: 232 LLGMEGANSI-FSGFLLFPDME 252



 Score = 28.1 bits (61), Expect = 7.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 65  IEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAA 111
           I+I + +    G     G  G  G PG  G  G  G KG+ G PG A
Sbjct: 22  IDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPGIKGEKGLPGLA 68


>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 38/214 (17%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPP-----------------GAAC 112
           G+ G AG+ G  G+ G  GP G  GL G  G  G  GPP                 G   
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGI 592

Query: 113 RRAYAAFSVGRREGLHSSDHFQAVPFDTELV-----------------NLDGAFDLAAGR 155
                  + G ++G +    ++   F  EL                  N    ++   G 
Sbjct: 593 DGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGI 652

Query: 156 FLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQ-SLMLLLAAG 214
           F C VPGVY+ + +VH       ++ +  N  P    Y +  +  + QA  S +LLL  G
Sbjct: 653 FTCEVPGVYYFAYHVHC-KGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPG 711

Query: 215 DAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
           D V+++M          G++  ++ +FSG+L+ P
Sbjct: 712 DRVFLQMPSEQAAGLYAGQY--VHSSFSGYLLYP 743



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G+ G  G  G +G PG +G  G+ G  G+VGPPG
Sbjct: 411 GPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPG 450



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G  G  G+ G  G+ GPPG RGL G  G KG+ G  G
Sbjct: 428 KGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKG 468



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQ------KGQVGPPGA 110
           KG++G  GV G  G  G++GP GA G+ G  G+       G +GPPGA
Sbjct: 359 KGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGA 406



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGLP  P +        PGP          +GD  RG+  V   +     KG  G  G+ 
Sbjct: 339 PGLPGPPGLPGIGKPGFPGP----------KGD--RGMGGVPGALGPRGEKGPIGAPGIG 386

Query: 79  GRAGRSGKEG------PPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G      PPGA G  G +G+ G VGP G
Sbjct: 387 GPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQG 423



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 27/81 (33%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP+               GLP +          G+ G  G+ G+ G  G  GP G
Sbjct: 195 PQGPPGPH---------------GLPGI----------GKPGGPGLPGQPGPKGDRGPKG 229

Query: 92  ARGLQGRRGQKGQ--VGPPGA 110
             G QG RG KG    G PGA
Sbjct: 230 LPGPQGLRGPKGDKGFGMPGA 250



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G+ GV G  G  G  GP G  G+ G +G +G  G PG
Sbjct: 461 KGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPG 501



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP      +       + G P     +    ++G  G  G +G AG+ G  G PG
Sbjct: 421 PQGPPGPKGEPGLQG------FPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPG 474

Query: 92  ARGLQGRRGQ------KGQVGPPG 109
             GL G +G+      +G  GPPG
Sbjct: 475 VPGLLGPKGEPGIPGDQGLQGPPG 498



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP           G    G+P ++     +   G  G+ G+ G  G+ G  G PG
Sbjct: 128 PRGPPGP----------PGLPGHGIPGIKGKPGPQGYPGV-GKPGMPGMPGKPGAMGMPG 176

Query: 92  ARGLQGRRGQKGQVGPPG 109
           A+G  G++G+ G +G PG
Sbjct: 177 AKGEIGQKGEIGPMGIPG 194



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQ--GRRGQKGQVGPPG 109
           G+P     + +   KGE G+ G  G  G  G +GPPG  GL   G+ G  G  G PG
Sbjct: 164 GMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPG 220



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 30/91 (32%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PG+   P +H      PPGP                GLP V          G+ G  G  
Sbjct: 251 PGVKGPPGMH-----GPPGPV---------------GLPGV----------GKPGVTGFP 280

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  GK G PG  G QG  G  G  GPPG
Sbjct: 281 GPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG 311



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRG------QKGQVGPPG 109
           KG  G  GV G  G  G+ G PG +GLQG  G        G +GPPG
Sbjct: 467 KGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPG 513



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           + G++G  G  G  G  G  GP G  G+ G +G+ G  GPPG
Sbjct: 487 IPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPG 528



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  GE G +G  G  G +GPPG  G+ G+ GQ G  G PG
Sbjct: 290 GAPGEPGPQGPIGVPGVQGPPGIPGI-GKPGQDGIPGQPG 328



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 72  KGEAGVRGRAGRSGKEGPPG--ARGLQGRRGQKGQVGPPG 109
           +GE G RG  G  G  GPPG    G+ G +G+ G  G PG
Sbjct: 117 RGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPG 156



 Score = 35.8 bits (81), Expect = 0.037
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G P  +  I +  ++G  G  G+ G+ G+ G  G PG  G +G +G  G  GPPG
Sbjct: 293 GEPGPQGPIGVPGVQGPPGIPGI-GKPGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346



 Score = 34.7 bits (78), Expect = 0.081
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGL-----QGRRGQKGQVGPPGA 110
           + G+ G  G +G  G  G  GPPG  G+      G +G +G  G PGA
Sbjct: 323 IPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGA 370



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 69  KGEKGEAGVRGRAGRSG--KEGPPGARGLQGRRGQKGQVGPPG 109
           KG  G  G+RG  G  G    G PG +G  G  G  G VG PG
Sbjct: 228 KGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPG 270



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GLP V   +  +   G  G+ G++G  G  G  GP G  G  G  G KG+ G PG
Sbjct: 471 GLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPG 525



 Score = 32.3 bits (72), Expect = 0.40
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 25/98 (25%)

Query: 19  PGLPRRPCVHCCR-PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGV 77
           PGLP +P     R P   PGP      +    GD   G+P               G  GV
Sbjct: 213 PGLPGQPGPKGDRGPKGLPGPQGLRGPK----GDKGFGMP---------------GAPGV 253

Query: 78  RGRAGRSGKEGPP-----GARGLQGRRGQKGQVGPPGA 110
           +G  G  G  GP      G  G+ G  G +G +G PGA
Sbjct: 254 KGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGA 291



 Score = 31.6 bits (70), Expect = 0.69
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKG--QVGPPGAA 111
           L+G  G  G+ G +G  G  G PG +G  G  G  G   +G PG A
Sbjct: 493 LQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVA 538



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G  G  G  GP G  G +G  G +G  G PG
Sbjct: 402 GPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPG 441



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G  G  G  GP G  G+ G +G  G  G PG
Sbjct: 393 GLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPG 432


>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 61.6 bits (148), Expect = 6e-10
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 38/214 (17%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPP-----------------GAAC 112
           G+ G AG+ G  G+ G  GP G  GL G  G  G  GPP                 G   
Sbjct: 533 GKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGI 592

Query: 113 RRAYAAFSVGRREGLHSSDHFQAVPFDTELV-----------------NLDGAFDLAAGR 155
                  + G ++G +    ++   F  EL                  N    ++   G 
Sbjct: 593 DGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGI 652

Query: 156 FLCTVPGVYFLSLNVHTWNYKETYLHIMLNRRPAAVLYAQPSERSVMQAQ-SLMLLLAAG 214
           F C VPGVY+ + +VH       ++ +  N  P    Y +  +  + QA  S +LLL  G
Sbjct: 653 FTCEVPGVYYFAYHVHC-KGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPG 711

Query: 215 DAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVKP 248
           D V+++M          G++  ++ +FSG+L+ P
Sbjct: 712 DRVFLQMPSEQAAGLYAGQY--VHSSFSGYLLYP 743



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G KGE G+ G  G  G +G PG +G  G+ G  G+VGPPG
Sbjct: 411 GPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPG 450



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 24/41 (58%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G  G  G+ G  G+ GPPG RGL G  G KG+ G  G
Sbjct: 428 KGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKG 468



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQ------KGQVGPPGA 110
           KG++G  GV G  G  G++GP GA G+ G  G+       G +GPPGA
Sbjct: 359 KGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGA 406



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PGLP  P +        PGP          +GD  RG+  V   +     KG  G  G+ 
Sbjct: 339 PGLPGPPGLPGIGKPGFPGP----------KGD--RGMGGVPGALGPRGEKGPIGAPGIG 386

Query: 79  GRAGRSGKEG------PPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G      PPGA G  G +G+ G VGP G
Sbjct: 387 GPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQG 423



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 27/81 (33%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP+               GLP +          G+ G  G+ G+ G  G  GP G
Sbjct: 195 PQGPPGPH---------------GLPGI----------GKPGGPGLPGQPGPKGDRGPKG 229

Query: 92  ARGLQGRRGQKGQ--VGPPGA 110
             G QG RG KG    G PGA
Sbjct: 230 LPGPQGLRGPKGDKGFGMPGA 250



 Score = 38.1 bits (87), Expect = 0.007
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           KGE G+ GV G  G  G  GP G  G+ G +G +G  G PG
Sbjct: 461 KGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPG 501



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP      +       + G P     +    ++G  G  G +G AG+ G  G PG
Sbjct: 421 PQGPPGPKGEPGLQG------FPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPG 474

Query: 92  ARGLQGRRGQ------KGQVGPPG 109
             GL G +G+      +G  GPPG
Sbjct: 475 VPGLLGPKGEPGIPGDQGLQGPPG 498



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 32  PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPG 91
           P  PPGP           G    G+P ++     +   G  G+ G+ G  G+ G  G PG
Sbjct: 128 PRGPPGP----------PGLPGHGIPGIKGKPGPQGYPGV-GKPGMPGMPGKPGAMGMPG 176

Query: 92  ARGLQGRRGQKGQVGPPG 109
           A+G  G++G+ G +G PG
Sbjct: 177 AKGEIGQKGEIGPMGIPG 194



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQ--GRRGQKGQVGPPG 109
           G+P     + +   KGE G+ G  G  G  G +GPPG  GL   G+ G  G  G PG
Sbjct: 164 GMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPG 220



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 31/91 (34%), Positives = 34/91 (37%), Gaps = 30/91 (32%)

Query: 19  PGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGVR 78
           PG+   P +H      PPGP                GLP V          G+ G  G  
Sbjct: 251 PGVKGPPGMH-----GPPGPV---------------GLPGV----------GKPGVTGFP 280

Query: 79  GRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  GK G PG  G QG  G  G  GPPG
Sbjct: 281 GPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG 311



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 69  KGEKGEAGVRGRAGRSGKEGPPGARGLQGRRG------QKGQVGPPG 109
           KG  G  GV G  G  G+ G PG +GLQG  G        G +GPPG
Sbjct: 467 KGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPG 513



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           + G++G  G  G  G  G  GP G  G+ G +G+ G  GPPG
Sbjct: 487 IPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPG 528



 Score = 37.0 bits (84), Expect = 0.016
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  GE G +G  G  G +GPPG  G+ G+ GQ G  G PG
Sbjct: 290 GAPGEPGPQGPIGVPGVQGPPGIPGI-GKPGQDGIPGQPG 328



 Score = 36.6 bits (83), Expect = 0.021
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 72  KGEAGVRGRAGRSGKEGPPG--ARGLQGRRGQKGQVGPPG 109
           +GE G RG  G  G  GPPG    G+ G +G+ G  G PG
Sbjct: 117 RGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPG 156



 Score = 35.8 bits (81), Expect = 0.037
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G P  +  I +  ++G  G  G+ G+ G+ G  G PG  G +G +G  G  GPPG
Sbjct: 293 GEPGPQGPIGVPGVQGPPGIPGI-GKPGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346



 Score = 34.7 bits (78), Expect = 0.081
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGL-----QGRRGQKGQVGPPGA 110
           + G+ G  G +G  G  G  GPPG  G+      G +G +G  G PGA
Sbjct: 323 IPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGA 370



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 69  KGEKGEAGVRGRAGRSG--KEGPPGARGLQGRRGQKGQVGPPG 109
           KG  G  G+RG  G  G    G PG +G  G  G  G VG PG
Sbjct: 228 KGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPG 270



 Score = 34.3 bits (77), Expect = 0.11
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 55  GLPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           GLP V   +  +   G  G+ G++G  G  G  GP G  G  G  G KG+ G PG
Sbjct: 471 GLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPG 525



 Score = 32.3 bits (72), Expect = 0.40
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 25/98 (25%)

Query: 19  PGLPRRPCVHCCR-PAWPPGPYARVSDRDLWRGDLWRGLPRVRPTIDIEILKGEKGEAGV 77
           PGLP +P     R P   PGP      +    GD   G+P               G  GV
Sbjct: 213 PGLPGQPGPKGDRGPKGLPGPQGLRGPK----GDKGFGMP---------------GAPGV 253

Query: 78  RGRAGRSGKEGPP-----GARGLQGRRGQKGQVGPPGA 110
           +G  G  G  GP      G  G+ G  G +G +G PGA
Sbjct: 254 KGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGA 291



 Score = 31.6 bits (70), Expect = 0.69
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 68  LKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKG--QVGPPGAA 111
           L+G  G  G+ G +G  G  G PG +G  G  G  G   +G PG A
Sbjct: 493 LQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVA 538



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G  G  G  GP G  G +G  G +G  G PG
Sbjct: 402 GPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPG 441



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 70  GEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPG 109
           G  G  G  G  G  G  GP G  G+ G +G  G  G PG
Sbjct: 393 GLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPG 432


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,417,606
Number of Sequences: 37866
Number of extensions: 591475
Number of successful extensions: 16042
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2121
Number of HSP's gapped (non-prelim): 6990
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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