Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FER1L5 Sequence: fasta or formatted (802aa) NCBI GI: 116642865
Description:

fer-1-like 5 isoform 1

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [2093aa] fer-1-like 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         33           2
 C cysteine            1.6         13           1
 D aspartate           6.2         50           2
 E glutamate           5.9         47           2
 F phenylalanine       5.9         47           1
 G glycine             4.6         37           2
 H histidine           2.4         19           1
 I isoleucine          5.1         41           2
 K lysine              7.6         61           3
 L leucine            10.8         87           2
 M methionine          2.4         19           2
 N asparagine          3.5         28           1
 P proline             8.9         71           3
 Q glutamine           5.0         40           2
 R arginine            3.7         30           1
 S serine              5.7         46           3
 T threonine           4.6         37           2
 V valine              4.6         37           2
 W tryptophan          2.7         22           2
 Y tyrosine            4.6         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fer-1-like 5 isoform 1 
FER1L5                0.996   fer-1-like 5 isoform 2 
MYOF                  0.415   myoferlin isoform b 
MYOF                  0.415   myoferlin isoform a 
DYSF                  0.413   dysferlin isoform 2 
DYSF                  0.413   dysferlin isoform 8 
DYSF                  0.413   dysferlin isoform 3 
DYSF                  0.413   dysferlin isoform 4 
DYSF                  0.413   dysferlin isoform 7 
DYSF                  0.413   dysferlin isoform 13 
DYSF                  0.413   dysferlin isoform 12 
DYSF                  0.413   dysferlin isoform 9 
DYSF                  0.411   dysferlin isoform 1 
DYSF                  0.411   dysferlin isoform 5 
DYSF                  0.411   dysferlin isoform 6 
DYSF                  0.411   dysferlin isoform 14 
DYSF                  0.411   dysferlin isoform 11 
DYSF                  0.411   dysferlin isoform 10 
OTOF                  0.242   otoferlin isoform c 
OTOF                  0.242   otoferlin isoform b 
OTOF                  0.242   otoferlin isoform a 
FER1L6                0.240   fer-1-like 6 
OTOF                  0.237   otoferlin isoform d 
SYT9                  0.014   synaptotagmin IX 
SYT3                  0.014   synaptotagmin III 
SYT3                  0.014   synaptotagmin III 
SYT3                  0.014   synaptotagmin III 
ESYT3                 0.012   family with sequence similarity 62 (C2 domain conta...
SYT1                  0.011   synaptotagmin I 
SYT1                  0.011   synaptotagmin I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press