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Search of human proteins with 239744015
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo
sapiens]
(385 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749756 PREDICTED: hypothetical protein [Homo sapiens] 792 0.0
gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo ... 792 0.0
gi|239755246 PREDICTED: hypothetical protein XP_002344510 [Homo ... 244 7e-65
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 44 3e-04
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 44 3e-04
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 44 3e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.018
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.018
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 37 0.030
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 37 0.030
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.039
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 37 0.039
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 36 0.051
gi|32455236 helicase (DNA) B [Homo sapiens] 36 0.067
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 35 0.087
gi|121582655 ankyrin repeat domain 35 [Homo sapiens] 35 0.087
gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isofor... 35 0.11
gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isofor... 35 0.11
gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isoofor... 35 0.11
gi|239749872 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 35 0.11
gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo ... 35 0.11
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.11
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 35 0.15
gi|226442744 hypothetical protein LOC643965 [Homo sapiens] 35 0.15
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.15
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 35 0.15
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 35 0.15
gi|48762934 alpha 2 type I collagen [Homo sapiens] 34 0.19
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
>gi|239749756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 792 bits (2045), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI
Sbjct: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
Query: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP
Sbjct: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
Query: 121 AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT 180
AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT
Sbjct: 121 AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT 180
Query: 181 ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL 240
ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL
Sbjct: 181 ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL 240
Query: 241 TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG 300
TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG
Sbjct: 241 TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG 300
Query: 301 PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA 360
PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA
Sbjct: 301 PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA 360
Query: 361 GTPGLGPPWLWPPYLPGRLLPTLRG 385
GTPGLGPPWLWPPYLPGRLLPTLRG
Sbjct: 361 GTPGLGPPWLWPPYLPGRLLPTLRG 385
>gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo
sapiens]
Length = 385
Score = 792 bits (2045), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Query: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI
Sbjct: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
Query: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP
Sbjct: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
Query: 121 AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT 180
AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT
Sbjct: 121 AGRGSCRALARRAASGVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT 180
Query: 181 ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL 240
ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL
Sbjct: 181 ASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEYEKRLGRRQGIAKNEKGGGNL 240
Query: 241 TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG 300
TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG
Sbjct: 241 TRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARG 300
Query: 301 PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA 360
PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA
Sbjct: 301 PLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA 360
Query: 361 GTPGLGPPWLWPPYLPGRLLPTLRG 385
GTPGLGPPWLWPPYLPGRLLPTLRG
Sbjct: 361 GTPGLGPPWLWPPYLPGRLLPTLRG 385
>gi|239755246 PREDICTED: hypothetical protein XP_002344510 [Homo
sapiens]
Length = 120
Score = 244 bits (624), Expect = 7e-65
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI
Sbjct: 1 MFRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRI 60
Query: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP
Sbjct: 61 QLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAP 120
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 43.5 bits (101), Expect = 3e-04
Identities = 58/234 (24%), Positives = 79/234 (33%), Gaps = 38/234 (16%)
Query: 153 GRPPARFPERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQGTRYRDNKGNEEKE 212
G P E P GR R P P P K ++ TR+ D + + +
Sbjct: 6 GSDPQVLEEHPSRKLGRYRSPTPLRP--------------AKGKTICTRFGDKRSSGQAG 51
Query: 213 VSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDAL 272
+ E+ L R E+G + R L A T+ R+ G A + G A
Sbjct: 52 -----NKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAA 106
Query: 273 EGA------AAALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPPPARGN---- 322
A + G +S Q+ +R + PLW + T+ P P G
Sbjct: 107 TAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKG 166
Query: 323 --RRFQPPGTVTSAGLRAEDRDREGAG---GPGQPRGSKPD----GAGTPGLGP 367
R PPGT G RA RE A G P P+ G PG P
Sbjct: 167 PPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLP 220
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 43.5 bits (101), Expect = 3e-04
Identities = 58/234 (24%), Positives = 79/234 (33%), Gaps = 38/234 (16%)
Query: 153 GRPPARFPERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQGTRYRDNKGNEEKE 212
G P E P GR R P P P K ++ TR+ D + + +
Sbjct: 6 GSDPQVLEEHPSRKLGRYRSPTPLRP--------------AKGKTICTRFGDKRSSGQAG 51
Query: 213 VSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDAL 272
+ E+ L R E+G + R L A T+ R+ G A + G A
Sbjct: 52 -----NKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAA 106
Query: 273 EGA------AAALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPPPARGN---- 322
A + G +S Q+ +R + PLW + T+ P P G
Sbjct: 107 TAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKG 166
Query: 323 --RRFQPPGTVTSAGLRAEDRDREGAG---GPGQPRGSKPD----GAGTPGLGP 367
R PPGT G RA RE A G P P+ G PG P
Sbjct: 167 PPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLP 220
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 43.5 bits (101), Expect = 3e-04
Identities = 58/234 (24%), Positives = 79/234 (33%), Gaps = 38/234 (16%)
Query: 153 GRPPARFPERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQGTRYRDNKGNEEKE 212
G P E P GR R P P P K ++ TR+ D + + +
Sbjct: 6 GSDPQVLEEHPSRKLGRYRSPTPLRP--------------AKGKTICTRFGDKRSSGQAG 51
Query: 213 VSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDAL 272
+ E+ L R E+G + R L A T+ R+ G A + G A
Sbjct: 52 -----NKSERELQARTPAPPRERGESSSPRGPTLRGRAKTTRGRSQGAGATETSAGNSAA 106
Query: 273 EGA------AAALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPPPARGN---- 322
A + G +S Q+ +R + PLW + T+ P P G
Sbjct: 107 TAAPHPTPASYPQGTISPPQLPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKG 166
Query: 323 --RRFQPPGTVTSAGLRAEDRDREGAG---GPGQPRGSKPD----GAGTPGLGP 367
R PPGT G RA RE A G P P+ G PG P
Sbjct: 167 PPPRPAPPGTRCCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLP 220
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.018
Identities = 35/111 (31%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 259 GGQAPPVARGVDALEGAAAALGELSGR-QVREQNQRRVPDARGPLWVSVSFAVTLTCFPP 317
G Q PP +G+ GAA G R V E+ P G ++ P
Sbjct: 741 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGP-----PG 795
Query: 318 PARGNRR---FQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA-GTPG 364
PA N PPG SAG R +R G PG + P GA G PG
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 846
Score = 31.6 bits (70), Expect = 1.3
Identities = 68/265 (25%), Positives = 86/265 (32%), Gaps = 60/265 (22%)
Query: 153 GRPPARFPERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQG-TRYRDNKGNEEK 211
G+P A+ + G G PGP+ P A P QG T KG
Sbjct: 843 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-------------QGPTGVTGPKGARGA 889
Query: 212 EVSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDA 271
+ T + GR N GN P S + A G PP G
Sbjct: 890 QGPPGATGFPGAAGRVGPPGSN----GNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 945
Query: 272 LEGAAAALGE--------------------LSGRQ-----VREQNQRRVPDARGPLWVSV 306
L+G A GE L+G++ ++ +R P GP
Sbjct: 946 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 1005
Query: 307 SFAVTLTCFPPPARGNRRFQPPGTVTSAGLR--AEDRDREGAGGPGQP------RGSKPD 358
P A G+R PPG V GL A + REG+ G P G K D
Sbjct: 1006 KQGA------PGASGDR--GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD 1057
Query: 359 GAGTPGLGPPWL-WPPYLPGRLLPT 382
T +G P PP PG PT
Sbjct: 1058 RGETGAVGAPGAPGPPGSPGPAGPT 1082
Score = 29.3 bits (64), Expect = 6.3
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 327 PPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDG-AGTPG-LGPPWLWPPYLPG 377
PPG AG + DR G G P DG GTPG GPP PP PG
Sbjct: 121 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPP--GPPGPPG 171
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.018
Identities = 35/111 (31%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 259 GGQAPPVARGVDALEGAAAALGELSGR-QVREQNQRRVPDARGPLWVSVSFAVTLTCFPP 317
G Q PP +G+ GAA G R V E+ P G ++ P
Sbjct: 672 GAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGP-----PG 726
Query: 318 PARGNRR---FQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA-GTPG 364
PA N PPG SAG R +R G PG + P GA G PG
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPG 777
Score = 31.6 bits (70), Expect = 1.3
Identities = 68/265 (25%), Positives = 86/265 (32%), Gaps = 60/265 (22%)
Query: 153 GRPPARFPERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQG-TRYRDNKGNEEK 211
G+P A+ + G G PGP+ P A P QG T KG
Sbjct: 774 GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP-------------QGPTGVTGPKGARGA 820
Query: 212 EVSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDA 271
+ T + GR N GN P S + A G PP G
Sbjct: 821 QGPPGATGFPGAAGRVGPPGSN----GNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPG 876
Query: 272 LEGAAAALGE--------------------LSGRQ-----VREQNQRRVPDARGPLWVSV 306
L+G A GE L+G++ ++ +R P GP
Sbjct: 877 LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG 936
Query: 307 SFAVTLTCFPPPARGNRRFQPPGTVTSAGLR--AEDRDREGAGGPGQP------RGSKPD 358
P A G+R PPG V GL A + REG+ G P G K D
Sbjct: 937 KQGA------PGASGDR--GPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGD 988
Query: 359 GAGTPGLGPPWL-WPPYLPGRLLPT 382
T +G P PP PG PT
Sbjct: 989 RGETGAVGAPGAPGPPGSPGPAGPT 1013
Score = 29.3 bits (64), Expect = 6.3
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 327 PPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDG-AGTPG-LGPPWLWPPYLPG 377
PPG AG + DR G G P DG GTPG GPP PP PG
Sbjct: 52 PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPP--GPPGPPG 102
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 37.0 bits (84), Expect = 0.030
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 316 PPPARGNRRF--QPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPP 373
PPP GN+ PPG + +++ R PG+P+G P G P PP PP
Sbjct: 142 PPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPP---PP 198
Query: 374 YLP 376
P
Sbjct: 199 GKP 201
Score = 35.8 bits (81), Expect = 0.067
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAE-DRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPPY 374
PPP GN+ PP G + D+ R PG+P+G P G P PP PP
Sbjct: 81 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP---PPG 137
Query: 375 LP 376
P
Sbjct: 138 KP 139
Score = 35.4 bits (80), Expect = 0.087
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 316 PPPARGNRRF--QPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPP 373
PPP GN+ PPG + +++ + PG+P+G P G P PP PP
Sbjct: 204 PPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP---PP 260
Query: 374 YLP 376
P
Sbjct: 261 GKP 263
Score = 35.0 bits (79), Expect = 0.11
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 316 PPPARGNRRF--QPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPP 373
PPP GN+ PPG + + R PG+P+G P G P PP PP
Sbjct: 266 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPP---PP 322
Query: 374 YLP 376
P
Sbjct: 323 GKP 325
Score = 30.0 bits (66), Expect = 3.7
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 317 PPARGNRRFQ----PPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWP 372
PP +G+ + Q PPG + ++ + PG+P+G P G P GPP P
Sbjct: 224 PPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPP---P 279
Query: 373 PYLP 376
P P
Sbjct: 280 PGKP 283
Score = 29.6 bits (65), Expect = 4.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 316 PPPARGNRRF--QPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPP 368
PPP GN+ PPG + + R PG+P+G P G GPP
Sbjct: 328 PPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQG-PPQQEGNNPQGPP 381
Score = 29.3 bits (64), Expect = 6.3
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 316 PPPARGNRRFQ---PPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWP 372
PPP G++ PPG + ++ + PG+P+G P G P GPP P
Sbjct: 286 PPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPP---P 341
Query: 373 PYLP 376
P P
Sbjct: 342 PGKP 345
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.0 bits (84), Expect = 0.030
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAE-DRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPPY 374
PPP GNR PP G + D+ R PG+P+G P G P PP PP
Sbjct: 121 PPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP---PPG 177
Query: 375 LP 376
P
Sbjct: 178 KP 179
Score = 35.8 bits (81), Expect = 0.067
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAE-DRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPPY 374
PPP GN+ PP G + D+ R PG+P+G P G P PP PP
Sbjct: 60 PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP---PPG 116
Query: 375 LP 376
P
Sbjct: 117 KP 118
Score = 34.3 bits (77), Expect = 0.19
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAE-DRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPPY 374
PPP G + PP G + D+ R PG+P+G P G P PP PP
Sbjct: 182 PPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPP---PPG 238
Query: 375 LP 376
P
Sbjct: 239 KP 240
Score = 28.9 bits (63), Expect = 8.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAE--DRDREGAGGPGQPRGSKPDGAGTPGLGPP 368
PPP GN+ PP G A+ + + PG+P+G P G GPP
Sbjct: 243 PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQG-PPQQEGNNPQGPP 296
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 36.6 bits (83), Expect = 0.039
Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 259 GGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPPP 318
G Q PP G L G GE G + +Q P A GPL P
Sbjct: 666 GEQGPPGPTGFQGLPGPPGPPGE--GGKPGDQGVPGDPGAVGPLG------------PRG 711
Query: 319 ARGNRRFQPPGTVTSAGLRAEDRDREGAGG--PGQPRGSKPDGAGTPG-LGPPWL 370
RGN PG G+ ++ AGG P P+GS P +GTPG GPP L
Sbjct: 712 ERGN-----PGERGEPGITGLPGEKGMAGGHGPDGPKGS-PGPSGTPGDTGPPGL 760
Score = 30.0 bits (66), Expect = 3.7
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 316 PPPARGNRRFQ----PPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPG 364
PP +RGN + P G V AG + D G PG+P G K D AG+PG
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEP-GQKGD-AGSPG 876
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 36.6 bits (83), Expect = 0.039
Identities = 39/101 (38%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 228 QGIAKNEKGG-GNLTRYSPLLQSAYNTQSRAAGGQAPPVAR---GVDALEGAAAALGELS 283
Q + +KGG G TR P A T S G+AP +R G A EGA AA E
Sbjct: 103 QARTRAQKGGKGEETRRGPA--PAGLTPSVCLYGRAPTASRTGPGAPA-EGARAAPREGG 159
Query: 284 GRQVREQNQRRVPDARGPLW-----VSVSF-AVTLTCFPPP 318
G V E+ R P G LW VS+S A + C PPP
Sbjct: 160 GEAVAERCARSQPSWEGELWGVRHLVSLSLPASSGACAPPP 200
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 36.2 bits (82), Expect = 0.051
Identities = 76/345 (22%), Positives = 114/345 (33%), Gaps = 36/345 (10%)
Query: 42 SPSRSAGSSSPSAPPPRRIQLRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGS 101
+PSR++ + PS P RA P+G P+TAS SS + G+
Sbjct: 343 TPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSS--------------TASPTGT 388
Query: 102 ASIWKPFCTDSESSIVSAPAGRGSCRALARRAASGVLWTRS-ALSPWFGAYLGRPPARFP 160
P T S +S+ P L+R + + + T S +P + G PP P
Sbjct: 389 PPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASP 448
Query: 161 ERPRGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQGTRYRDNKGNEEKEVSAFQTEY 220
G P Q+ +SP S G+ + S +T
Sbjct: 449 ------TGTPSRASPTGTQSTASP----TGSPSTASPTGSPSTASPTGSPSRASLTRTPS 498
Query: 221 EKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALG 280
L + + A ++TR +P S T S A+ +P A + + AA
Sbjct: 499 RASLTKMESTA-------SITR-TPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRT 550
Query: 281 ELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPP---PARGNRRFQPPGTVTSAGLR 337
R ++ + V LT PP P R P G +SA L
Sbjct: 551 PSRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSALLT 610
Query: 338 AEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWPPYLPGRLLPT 382
D P + ++ +P PP P P R PT
Sbjct: 611 KMDSTASITRTPPRASPTETPPRASPTGTPPRASPTGTPPRASPT 655
Score = 32.3 bits (72), Expect = 0.74
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 26/170 (15%)
Query: 39 PGLSPSRSAGSSSPSAPPPRRIQLRAEPSGLPNTAS---SAWASSRLWNAAR----RRSV 91
P +P R++ + +PS P Q A P+G P+TAS S +S + +R R
Sbjct: 439 PTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPS 498
Query: 92 KALESKERGSASIWK------PFCTDSESSIVSAPAGRGSCRALARRAASGVLWTRSALS 145
+A +K +ASI + P T S +S +P+ ALA + S TR+
Sbjct: 499 RASLTKMESTASITRTPSRASPTWTPSTASPTGSPS-----TALAMGSPSRAALTRTPSR 553
Query: 146 PWFGAYLGRPPARFPERPRGDCGRCRDPG----PRLPQTASSPLLALRES 191
A L R P+R R P R+P +AS + R S
Sbjct: 554 ----ASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPSRTS 599
Score = 29.3 bits (64), Expect = 6.3
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 42 SPSRSAGSSSPSAPPPRRIQLRAEPSGLPNTASSAWASSR--LWNAARRRSVKALES--- 96
S +R+ +SP+ PPR A P+G P AS + S L R S + S
Sbjct: 210 SITRTLSRASPTGTPPR-----ASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTS 264
Query: 97 --KERGSASIWK---------PFCTDSESSIVSAPAGRGSCRALARRAASGVLWTRSALS 145
K +ASI + P T S +S+ P+ R L R + +G+L S
Sbjct: 265 LTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTK 324
Query: 146 PWFGAYLGRPPAR 158
A + R P R
Sbjct: 325 MDSTASISRTPPR 337
Score = 28.9 bits (63), Expect = 8.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 39 PGLSPSRSAGSSSPSAPPPRRIQL----RAEPSGLPNTASSAWASSR 81
P SP+ + +SP+ PPR RA P+G P AS SR
Sbjct: 623 PRASPTETPPRASPTGTPPRASPTGTPPRASPTGTPPRASPTGTPSR 669
>gi|32455236 helicase (DNA) B [Homo sapiens]
Length = 1087
Score = 35.8 bits (81), Expect = 0.067
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 24/125 (19%)
Query: 2 FRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRIQ 61
F +TRL+H L + G A P DF P S S G S+PSA P
Sbjct: 941 FPRKTRLKHFLQSKLSSSG----------APPADFPSPRKSSGDSGGPSTPSASP----- 985
Query: 62 LRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAPA 121
LP A + W+ A + L ER S P D++ + + A
Sbjct: 986 -------LPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS--SPDGVDTDDDLPKSRA 1036
Query: 122 GRGSC 126
+ +C
Sbjct: 1037 SKRTC 1041
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 35.4 bits (80), Expect = 0.087
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 19 LGGKPGQERGR--RAKPGDFLFPGLSPSRSAGSSSPSAPPPRRIQLRAEPSGL 69
LG PG +RGR + PG LFP P P PPP + +R PS L
Sbjct: 52 LGRGPGHDRGRDRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSAL 104
>gi|121582655 ankyrin repeat domain 35 [Homo sapiens]
Length = 1001
Score = 35.4 bits (80), Expect = 0.087
Identities = 37/145 (25%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 164 RGDCGRCRDPGPRLPQTASSPLLALRESCGKLRSQGTRYRDNKGNEEKEV--------SA 215
RG CR+PG L AS + AL + GKL + + + +E+ A
Sbjct: 758 RGSLSPCREPGTSLKAPASPQVAALEQDLGKLEEELRAVQATMSGKSQEIGKLKQLLYQA 817
Query: 216 FQTEYEKRLGRRQGIAKNEKGGGNLTRYS-------PLLQSAYNTQSRAAGGQAPPVARG 268
+ E R + ++EK G+L + L YNT R G VA
Sbjct: 818 TEEVAELRAREAASLRQHEKTRGSLVAQAQAWGQELKALLEKYNTACREVGRLREAVAE- 876
Query: 269 VDALEGAAAALGELSGRQVREQNQR 293
G AA RQ E R
Sbjct: 877 ERRRSGDLAAQAAEQERQASEMRGR 901
>gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isoform 2
[Homo sapiens]
Length = 985
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 277 AALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPP-PARGNRRFQPPGTVTSAG 335
AALG+ RR D R + A+ L+ PP P+RG R P T S
Sbjct: 860 AALGQTEPLPAEAPWARRPVDPRRRS-LPAGDALYLSFNPPQPSRGTDRLDLPVTTRSVH 918
Query: 336 LRAEDRDREGAGGPGQ--PRGSKPDGAGTPGLGPPWLWPPYLP 376
EDR+R+ G P + S PD G+ G L PP+ P
Sbjct: 919 RNFEDRERQELGSPEERLQDSSDPD-TGSEEEGSSRLSPPHSP 960
>gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isoform 1
[Homo sapiens]
Length = 986
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 277 AALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPP-PARGNRRFQPPGTVTSAG 335
AALG+ RR D R + A+ L+ PP P+RG R P T S
Sbjct: 861 AALGQTEPLPAEAPWARRPVDPRRRS-LPAGDALYLSFNPPQPSRGTDRLDLPVTTRSVH 919
Query: 336 LRAEDRDREGAGGPGQ--PRGSKPDGAGTPGLGPPWLWPPYLP 376
EDR+R+ G P + S PD G+ G L PP+ P
Sbjct: 920 RNFEDRERQELGSPEERLQDSSDPD-TGSEEEGSSRLSPPHSP 961
>gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isooform 3
[Homo sapiens]
Length = 958
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 277 AALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTCFPP-PARGNRRFQPPGTVTSAG 335
AALG+ RR D R + A+ L+ PP P+RG R P T S
Sbjct: 833 AALGQTEPLPAEAPWARRPVDPRRRS-LPAGDALYLSFNPPQPSRGTDRLDLPVTTRSVH 891
Query: 336 LRAEDRDREGAGGPGQ--PRGSKPDGAGTPGLGPPWLWPPYLP 376
EDR+R+ G P + S PD G+ G L PP+ P
Sbjct: 892 RNFEDRERQELGSPEERLQDSSDPD-TGSEEEGSSRLSPPHSP 933
>gi|239749872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 293 RRVPDARGPLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAG----- 347
RR P GP W S+ + V + RG+RR + R +++R GAG
Sbjct: 13 RRKPHGPGP-WRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLG 71
Query: 348 --GPGQPRG 354
G GQPRG
Sbjct: 72 LAGAGQPRG 80
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 35.0 bits (79), Expect = 0.11
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 39 PGLSPSRSAGSSSPSAP-PPRRIQLRAEPSGLPN-----------TASSAWASSRLWNAA 86
P + + S+ SS PSAP PP R Q R SG A+ A + + +A
Sbjct: 28 PPRTVTSSSASSRPSAPTPPPRSQRRRRRSGEAREGVCSRHCGGLMAAGQAARTPVPDAD 87
Query: 87 RRRSVKALESKERGSASIWKPFCTDSESSIVSAPAGRGSCRALARRAASGVLWTRSALSP 146
RR+S ++ +R +A+ P T + P RG+C ARR G RS P
Sbjct: 88 RRQSA-VTDATQRPAAAESSPVWT---GLLQRGPHDRGACGNTARRLLPGGGRLRSPRDP 143
Query: 147 WFGAYLGRPPARFPERPRGDCGRCRDPGPR 176
+ + RP + R + G PGPR
Sbjct: 144 AWESGRRRPASGV----RVESGVLPVPGPR 169
>gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo
sapiens]
Length = 125
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 293 RRVPDARGPLWVSVSFAVTLTCFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAG----- 347
RR P GP W S+ + V + RG+RR + R +++R GAG
Sbjct: 13 RRKPHGPGP-WRSICWVVMARLWRATTRGDRRAGRAEQLAGHPRRLSEKERRGAGPGSLG 71
Query: 348 --GPGQPRG 354
G GQPRG
Sbjct: 72 LAGAGQPRG 80
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 35.0 bits (79), Expect = 0.11
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 246 LLQSAYNTQSRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARGPLWVS 305
L + A + Q + PP G+ +G GE +V + ++ P GP +
Sbjct: 165 LPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQG--EVGKDGEKGDPGPPGPAGLP 222
Query: 306 VSFAVTLT---------CFPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRG-- 354
S + PP RG F+ P + A +A DR G G P+G
Sbjct: 223 GSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDL 282
Query: 355 SKPDGAGTPGLGPPWLWPPYLPGR 378
+P GTPG+ P P +PG+
Sbjct: 283 GRPGPKGTPGVAGP-SGEPGMPGK 305
Score = 30.4 bits (67), Expect = 2.8
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 317 PPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPG-LGPPWLWPPYL 375
P RGN+ + AGL + D+ G G P SK G PG GPP P L
Sbjct: 592 PGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPP--GDPGL 649
Query: 376 PGRL 379
PG +
Sbjct: 650 PGAI 653
Score = 28.9 bits (63), Expect = 8.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 152 LGRPPARFPERPRGDCGRCRDPGPR 176
+G P AR P RG G DPGPR
Sbjct: 571 IGHPGARGPPGYRGPTGELGDPGPR 595
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 34.7 bits (78), Expect = 0.15
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 315 FPPPA-RGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPPWLWP 372
FPPP RG R PPG G + E + G PG R +P G PG+ P WP
Sbjct: 62 FPPPFFRGGRSPGPPGLPGKTGPKGEKGE---LGRPG--RKGRPGPPGVPGMPGPIGWP 115
>gi|226442744 hypothetical protein LOC643965 [Homo sapiens]
Length = 163
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 339 EDRDREGAGG-----PGQPRGSKPDGAGTPGLGPPWLWPPYLPGRLLPTL 383
E + EG GG P PRG PD + P W PP LPGRLL L
Sbjct: 7 ETEEEEGGGGASDTAPMLPRGP-PDHQASALTCPGWSGPPLLPGRLLAGL 55
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.15
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 22/127 (17%)
Query: 259 GGQAPPVARGVDALEGAAAALGELSGRQVRE--------------QNQRRVPDARGPLWV 304
G PP +G+ L G GE +G+ + P RGP +
Sbjct: 630 GDTGPPGPQGLQGLPGTGGPPGE-NGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688
Query: 305 SVSFAVTLTCFPPPARGNRRFQ----PPGTVTSAGLRAEDRDREGAGGPGQPRGSK--PD 358
+ + + PP G + PPG + GL+ +R G G PG P+G K P
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG-PKGDKGEPG 747
Query: 359 GAGTPGL 365
G G G+
Sbjct: 748 GPGADGV 754
Score = 32.3 bits (72), Expect = 0.74
Identities = 26/67 (38%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 316 PPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDG-AGTPGL--GPPWLWP 372
PP + GN PPG S G G PG P S P G AG PG P P
Sbjct: 883 PPGSNGNPG--PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP 940
Query: 373 PYLPGRL 379
P PG L
Sbjct: 941 PGAPGPL 947
Score = 30.4 bits (67), Expect = 2.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 317 PPARGNRRFQP-----PGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPGLGPP 368
PP R QP PG + G ++ +R G GGPG P+G T GPP
Sbjct: 565 PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG-PQGPPGKNGETGPQGPP 620
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 339 EDRDREGAGG-----PGQPRGSKPDGAGTPGLGPPWLWPPYLPGRLLPTL 383
E + EG GG P PRG PD + P W PP LPGRLL L
Sbjct: 331 ETEEEEGGGGASDTAPMLPRGP-PDHQASALTCPGWSGPPLLPGRLLAGL 379
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 34.7 bits (78), Expect = 0.15
Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 339 EDRDREGAGG-----PGQPRGSKPDGAGTPGLGPPWLWPPYLPGRLLPTL 383
E + EG GG P PRG PD + P W PP LPGRLL L
Sbjct: 331 ETEEEEGGGGASDTAPMLPRGP-PDHQASALTCPGWSGPPLLPGRLLAGL 379
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.3 bits (77), Expect = 0.19
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 255 SRAAGGQAPPVARGVDALEGAAAALGELSGRQVREQNQRRVPDARGPLWVSVSFAVTLTC 314
S AG PP G L GA LG R +R +P G + +
Sbjct: 849 SGEAGTAGPPGTPGPQGLLGAPGILGLPGSR-----GERGLPGVAGAVGEPGPLGIA--- 900
Query: 315 FPPPARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGA-GTPG 364
PP ARG PPG V S G+ + AG G P P G G PG
Sbjct: 901 GPPGARG-----PPGAVGSPGVNGAPGE---AGRDGNPGNDGPPGRDGQPG 943
Score = 30.8 bits (68), Expect = 2.1
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 318 PARGNRRFQPPGTVTSAGLRAEDRDREGAGGPGQPRGSKPDGAGTPG 364
PA + R PGTV AG+R + AG PG P P G G
Sbjct: 1061 PAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGG 1107
Score = 29.3 bits (64), Expect = 6.3
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 327 PPGTVTSAGLRAEDRDREGAGGPGQP--RGSKPDGAGTPG-------LGPP 368
PPG G R + + AG PG P RGS P G PG +GPP
Sbjct: 371 PPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS-PGSRGLPGADGRAGVMGPP 420
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 34.3 bits (77), Expect = 0.19
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 11/208 (5%)
Query: 76 AWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAPAGRGSCRALARRAAS 135
AW A+ R K ++ +A+ K + T + S G G + ++ A+
Sbjct: 616 AWRQKAAGTGAKSRK-KPWRRGQKDAAAAEKAWATGATSR------GSGGKQPRWQKPAA 668
Query: 136 GVLWTRSALSPWFGAYLGRPPARFPERPRGDCGRCRDPGPRLPQT-ASSPLLALRESCGK 194
+ +A + A + P R + RGD G+ G Q P L G
Sbjct: 669 AGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGG 728
Query: 195 LRSQGTRYRDNKGNE-EKEVSAFQTEYEKRLGRRQGIAKNEKGGGNLTRYSPLLQSAYNT 253
+S+G+ ++G+ K S + K G G AK +GGG +R +A
Sbjct: 729 AKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGG--GGAKRRRGGGAKSRSGEKAVTAGGQ 786
Query: 254 QSRAAGGQAPPVARGVDALEGAAAALGE 281
++ AAGG+ PP + AAA G+
Sbjct: 787 KAAAAGGKKPPRVKSRGGRGQKAAAGGK 814
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,723,109
Number of Sequences: 37866
Number of extensions: 1194389
Number of successful extensions: 8060
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 7150
Number of HSP's gapped (non-prelim): 1207
length of query: 385
length of database: 18,247,518
effective HSP length: 104
effective length of query: 281
effective length of database: 14,309,454
effective search space: 4020956574
effective search space used: 4020956574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.