Guide to the Human Genome
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Name: LOC100288993 Sequence: fasta or formatted (761aa) NCBI GI: 239743839
Description:

PREDICTED: hypothetical protein XP_002342967

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         83           8
 C cysteine            3.4         26           1
 D aspartate           1.4         11           1
 E glutamate           0.7          5           1
 F phenylalanine      11.0         84           2
 G glycine             5.8         44           2
 H histidine           1.8         14           2
 I isoleucine          1.7         13           2
 K lysine              2.0         15           3
 L leucine            11.0         84           2
 M methionine          0.4          3           1
 N asparagine          1.1          8           2
 P proline            20.2        154           7
 Q glutamine           2.6         20           2
 R arginine           10.1         77           3
 S serine              6.4         49           2
 T threonine           4.5         34           1
 V valine              2.2         17           2
 W tryptophan          0.9          7           1
 Y tyrosine            1.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342967 
LOC100287723          0.344   PREDICTED: hypothetical protein XP_002342271 
LOC100132426          0.221   PREDICTED: similar to hCG1742442 
LOC642424             0.210   PREDICTED: similar to hCG1742442 
LOC642424             0.209   PREDICTED: similar to hCG1742442 
LOC642424             0.209   PREDICTED: similar to hCG1742442 
LOC642838             0.205   PREDICTED: similar to hCG1742442 
LOC439957             0.148   PREDICTED: similar to hCG1742442 
LOC439957             0.148   PREDICTED: similar to hCG1742442 
LOC100288750          0.119   PREDICTED: hypothetical protein 
LOC100288750          0.119   PREDICTED: hypothetical protein XP_002343022 
LOC650405             0.117   PREDICTED: similar to hCG2042707 
LOC652493             0.108   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.103   PREDICTED: similar to hCG26659 
LOC100291464          0.103   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.103   PREDICTED: similar to hCG26659 
LOC100128009          0.084   PREDICTED: hypothetical protein 
LOC100128009          0.084   PREDICTED: hypothetical protein 
LOC100128009          0.084   PREDICTED: hypothetical protein 
LOC440871             0.078   PREDICTED: similar to hCG2043206 
LOC100291731          0.077   PREDICTED: similar to hCG36857 
LOC100290819          0.077   PREDICTED: hypothetical protein XP_002348319 
LOC100291786          0.076   PREDICTED: similar to hCG2043206 
LOC100291027          0.075   PREDICTED: hypothetical protein XP_002348323 
LOC100291682          0.074   PREDICTED: similar to hCG1686089 
LOC100290992          0.074   PREDICTED: hypothetical protein XP_002347049 
FMN2                  0.053   formin 2 
LOC100290481          0.039   PREDICTED: hypothetical protein XP_002348153 
RAPH1                 0.038   Ras association and pleckstrin homology domains 1 is...
LOC100293277          0.037   PREDICTED: similar to hCG2040021 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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