Search of human proteins with 239743694

Search of human proteins with 239743694

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]           279   4e-76
gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo ...   279   4e-76
gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]           275   6e-75
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ...    41   3e-04
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ...    41   3e-04
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ...    41   3e-04
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               38   0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      37   0.006
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom...    35   0.014
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom...    35   0.014
gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo ...    35   0.019
gi|153281158 dual specificity phosphatase 8 [Homo sapiens]             35   0.019
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ...    35   0.025
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap...    34   0.042
gi|169164040 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|113413839 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|113412994 PREDICTED: hypothetical protein [Homo sapiens]            34   0.042
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    33   0.055
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    33   0.055
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    33   0.072
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    33   0.072
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    33   0.072
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    33   0.072
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         33   0.072
gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]              33   0.094
gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]              33   0.094
gi|239755771 PREDICTED: hypothetical protein [Homo sapiens]            32   0.12 
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]        32   0.16 
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ...    32   0.16 
gi|239753283 PREDICTED: hypothetical protein [Homo sapiens]            32   0.16 

>gi|239749542 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  279 bits (714), Expect = 4e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239743694 PREDICTED: hypothetical protein XP_002342927 [Homo
           sapiens]
          Length = 136

 Score =  279 bits (714), Expect = 4e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239755024 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 136

 Score =  275 bits (704), Expect = 6e-75
 Identities = 135/136 (99%), Positives = 135/136 (99%)

Query: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60
           MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR
Sbjct: 1   MISKGTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR 60

Query: 61  GPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120
           G GEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE
Sbjct: 61  GLGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVE 120

Query: 121 RKVVFGIIFPPERDGT 136
           RKVVFGIIFPPERDGT
Sbjct: 121 RKVVFGIIFPPERDGT 136


>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
           sapiens]
          Length = 307

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 106 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 156

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 157 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 206


>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
           sapiens]
          Length = 325

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 124 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 174

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 175 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 224


>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
           sapiens]
          Length = 325

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 12  SPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRAS 71
           +P G  +S GPG LPS    +PARK +    +        + +S A A   G  +G R  
Sbjct: 124 APVGSRASSGPG-LPSAAAARPARKTLTCQPR--------SIESPATASSAGCGSGPRVP 174

Query: 72  AWLQLQPPSLRSSPLMHPARRAAGRGST--------VSRGRRAGTPGGRL 113
               L P    SSP    +RR AG G T               G+PGGR+
Sbjct: 175 QVRLLGPGGRPSSPARDGSRRKAGHGCTSQSQGDAVAMEAEARGSPGGRV 224


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 28/112 (25%)

Query: 5    GTSSGSYSPWGFTSSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGP 62
            G S G + P G      P RLP P ++  QPARK  ++ G  G + P H           
Sbjct: 995  GESDGFFHPEG-----QPQRLPQPPEVGPQPARKVTLTRG--GLQQPPHL---------- 1037

Query: 63   GEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLR 114
              P G  A + +   PP ++S   +HPA++A   G    RGR    P GR R
Sbjct: 1038 --PAGPHAHSPV---PPGIKSIQGIHPAKKAIMHG----RGRGVAGPMGRGR 1080


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 36.6 bits (83), Expect = 0.006
 Identities = 37/115 (32%), Positives = 42/115 (36%), Gaps = 12/115 (10%)

Query: 7   SSGSYSPWGFTSSPG-PGRLPSPGQLQPARKKMVSSGQVGRRLPIHAR--DSAAGARGPG 63
           + G   P G    PG PG   +PGQ+ P R      G+ G   P  AR  D A GA GP 
Sbjct: 276 AKGDAGPAGPKGEPGSPGENGAPGQMGP-RGLPGERGRPGAPGPAGARGNDGATGAAGPP 334

Query: 64  EPTG--------GRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPG 110
            PTG        G   A  +  P   R S      R   G          AG PG
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG 389


>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
           sapiens]
          Length = 554

 Score = 35.4 bits (80), Expect = 0.014
 Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 18  SSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQ 75
           SS  P  L +P  L  QP   +  SSG V     +  R S    R P EP GG AS    
Sbjct: 406 SSLRPQGLSNPSTLSAQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAA 465

Query: 76  LQPPSLRSSPLMHPARRAAGRGST 99
              P   S PL          GS+
Sbjct: 466 RPLPRFNSVPLTDTGHERQSEGSS 489


>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
           sapiens]
          Length = 554

 Score = 35.4 bits (80), Expect = 0.014
 Identities = 28/84 (33%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 18  SSPGPGRLPSPGQL--QPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQ 75
           SS  P  L +P  L  QP   +  SSG V     +  R S    R P EP GG AS    
Sbjct: 406 SSLRPQGLSNPSTLSAQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAA 465

Query: 76  LQPPSLRSSPLMHPARRAAGRGST 99
              P   S PL          GS+
Sbjct: 466 RPLPRFNSVPLTDTGHERQSEGSS 489


>gi|239748337 PREDICTED: hypothetical protein XP_002346632 [Homo
           sapiens]
          Length = 189

 Score = 35.0 bits (79), Expect = 0.019
 Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 15  GFTSSPGPGRLPS-PGQLQPARKKMVSSGQVGRRLPIHARDSAAGAR---GP-GEPTGGR 69
           GF +  GP R P  PG   P   +     +V R     +  +  G R   GP G P G  
Sbjct: 49  GFQAETGPRRRPFLPGVAHPRTHRQTGPARVTR-----SAKAGYGLRVGSGPYGRPRGNA 103

Query: 70  ASAWLQLQPPSLRSS----PLMHPARRAAGRGSTVSRGRRAGTPGGR 112
               +  +P S  S+    P + PAR  AG+G   + G R G   GR
Sbjct: 104 GQEKVWEKPASEASASGRPPELAPARSGAGQGRRPNGGDRQGLGAGR 150


>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
          Length = 625

 Score = 35.0 bits (79), Expect = 0.019
 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 20  PGPGRLPSPGQLQPARKKM----VSSGQVGRRLPIHARD--SAAGARGPGEPTGGRASAW 73
           P P R P P    PAR       ++ G   R+ P H     SA G  GPG+P G    AW
Sbjct: 451 PRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGLPGPGQPAG--PGAW 508

Query: 74  L-QLQPPSLRS--SPLMHPARRAAGRGSTV-SRGRRAGTPG 110
              L  P   S   P       A G G  + +   RAG PG
Sbjct: 509 APPLDSPGTPSPDGPWCFSPEGAQGAGGVLFAPFGRAGAPG 549


>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
            sapiens]
          Length = 2923

 Score = 34.7 bits (78), Expect = 0.025
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 20   PGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARD-SAAGARGPGEPTGGRASAWLQ--- 75
            PGPG+ P PG      K+   +G    RL  +    S  G+ GP   +  +    +    
Sbjct: 2783 PGPGKAPWPGDFGTTAKESSGNGAPEERLRENGDALSREGSLGPLPGSSAQPHKGILKKK 2842

Query: 76   -LQPPSLRSSPLMHPARRAAG--RGSTVSRGRRAGTP 109
             L   S +SS L  P  +  G  RGS+ S G R G P
Sbjct: 2843 CLPTISEKSSLLRLPLEQCTGSSRGSSASEGSRGGPP 2879


>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 166

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 31  LQPARKKMVSSGQVGRRLPIHARDSAAGAR--GPGEPTGGRASAWLQLQPPSLRSSPLMH 88
           LQPA +K    G  GRR       +  GAR   PG    G A+ W   QPP        H
Sbjct: 3   LQPADEKGERKG--GRRALCAPARAGGGARLEKPGWRAAGLATDW---QPPPPPGRVAEH 57

Query: 89  PARRAAGRGSTVSRGRRAGTPGGR 112
            AR AAG      +GRRA + G R
Sbjct: 58  GARPAAG------KGRRAVSAGAR 75


>gi|169164040 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|113413839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|113412994 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 33.9 bits (76), Expect = 0.042
 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 44 VGRRLPIHARDSA--AGARGPGEPTGGRASAWLQLQPPSLRSSPLMHPARRAAGR 96
          VG+R P  AR S   AG  G GEP GGR    L L+P   R    + P R AA R
Sbjct: 16 VGKRNPARARSSPDLAGGAGAGEPLGGR----LFLRP--ARGEAAVRPGRGAARR 64


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 33.5 bits (75), Expect = 0.055
 Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAG--ARGPGEPTGGRASAWLQ 75
           S P     P P + +P R    S  +  +R P  AR S AG    GP    GG A     
Sbjct: 370 SEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGG-APTPPH 428

Query: 76  LQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGR 112
            +P   R  P   P  RA  RG   S G  AG+  GR
Sbjct: 429 ARPTGRRQDP--EPGPRAP-RGGPASSGWHAGSAAGR 462


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 33.5 bits (75), Expect = 0.055
 Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAG--ARGPGEPTGGRASAWLQ 75
           S P     P P + +P R    S  +  +R P  AR S AG    GP    GG A     
Sbjct: 370 SEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWPGG-APTPPH 428

Query: 76  LQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGR 112
            +P   R  P   P  RA  RG   S G  AG+  GR
Sbjct: 429 ARPTGRRQDP--EPGPRAP-RGGPASSGWHAGSAAGR 462


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGPGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 401 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 455

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 456 RGRGSRGSRGNRGGNVGGK 474


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGPGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 502 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 556

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 557 RGRGSRGSRGNRGGNVGGK 575


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGPGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 398 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 452

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 453 RGRGSRGSRGNRGGNVGGK 471


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 21/79 (26%)

Query: 50  IHARDSAAGARGPGEPTGGRASAWLQLQPP------SLRSSPLMHP----------ARRA 93
           +  R    G RG   P  GR +      PP      S R +PL  P          A++ 
Sbjct: 499 VRGRGGGRGGRGAPPPPRGRGAP-----PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQ 553

Query: 94  AGRGSTVSRGRRAGTPGGR 112
            GRGS  SRG R G  GG+
Sbjct: 554 RGRGSRGSRGNRGGNVGGK 572


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 33.1 bits (74), Expect = 0.072
 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 8   SGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPI-HARDSAAGARGPGEPT 66
           S SYSP      P P R PSP +  P R+          R P+   R S+A   G    +
Sbjct: 306 SRSYSP---RRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS 362

Query: 67  GGRASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRR---AGTPGGRLRYGSTVER 121
               S     +PP   SSP     RR +   S   R  R     TP  + R+  T ++
Sbjct: 363 SSSRSRSPPKKPPKRTSSP-PRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQ 419



 Score = 26.6 bits (57), Expect = 6.7
 Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 26/115 (22%)

Query: 19  SPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQP 78
           SP     PSP      RK+   +   GRR            R P  P   R  +     P
Sbjct: 524 SPSRSASPSP------RKRQKETSPRGRR-----------RRSPSPPPTRRRRSPSPAPP 566

Query: 79  PSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGGRLRYGSTVERKVVFGIIFPPER 133
           P  R +P   P RR      T S   R  +P  R RY   ++R+  +    PP+R
Sbjct: 567 PRRRRTPTPPPRRR------TPSPPPRRRSPSPR-RYSPPIQRR--YSPSPPPKR 612


>gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]
          Length = 565

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQ 77
           S P    LP P +   AR K VSSG + R + I    +  G RG GE     +   L+ +
Sbjct: 93  SPPPTVALPLPSRTNLARSKSVSSGDL-RPMGI----ALGGHRGTGELGAALSRLALRPE 147

Query: 78  PPSLRSS 84
           PP+LR S
Sbjct: 148 PPTLRRS 154


>gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]
          Length = 565

 Score = 32.7 bits (73), Expect = 0.094
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 18  SSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQ 77
           S P    LP P +   AR K VSSG + R + I    +  G RG GE     +   L+ +
Sbjct: 93  SPPPTVALPLPSRTNLARSKSVSSGDL-RPMGI----ALGGHRGTGELGAALSRLALRPE 147

Query: 78  PPSLRSS 84
           PP+LR S
Sbjct: 148 PPTLRRS 154


>gi|239755771 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 164

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 31  LQPARKKMVSSGQVGRRLPIHARDSAAGARGPGEPTGGRASAWLQLQPPSLRSSPLMH-- 88
           +Q  +K  +  G++    P  AR   +    P  PTG  A AW+     +  S P  H  
Sbjct: 65  MQDGKKDSIPGGELPWNAPRTARTHCSFRIPPFSPTGANACAWVLAALWTPHSPPGFHLC 124

Query: 89  ---PARRAAGRGSTVSRGRRAGTPGG 111
              PA  A  +      G+R GT  G
Sbjct: 125 NRIPADHAHDKHCLQRAGQRKGTAPG 150


>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
          Length = 366

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 5  GTSSGSYSPWGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSAAGARGPGE 64
          G+ + S  P      PGP   P+PGQ + A ++ V+  + GRR P        G  G G 
Sbjct: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAP-------PGGGGSGT 91

Query: 65 PTGG 68
          P  G
Sbjct: 92 PEPG 95



 Score = 26.9 bits (58), Expect = 5.1
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 61  GPGEPTGGR--ASAWLQLQPPSLRSSPLMHPARRAAGRGSTVSRGRRAGTPGG 111
           GPG PT       AW   +PP     P     R A+ R  T  R  R   PGG
Sbjct: 37  GPGSPTRSAPPGPAW---RPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG 86


>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
           sapiens]
          Length = 427

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 14  WGFTSSPGPGRLPSPGQLQPARKKMVSSGQVGRRLPIHARDSA--------AGARGPGEP 65
           W     PGP   P PG+  P      +S   G  LPI     A        AG R PG+ 
Sbjct: 192 WVIAPRPGPAERPFPGEKGP--PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKS 249

Query: 66  TGGRASAWLQLQPPSLR 82
            G  A+    L  P LR
Sbjct: 250 MGDAAAPGGSLGNPRLR 266


>gi|239753283 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 32.0 bits (71), Expect = 0.16
 Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 41  SGQVGRRLPIHARDSAAGARGP---GEPTGGRASA---WL--QLQPPSLRSSPLMHPARR 92
           +G++GR+    +R +AAG+RGP   G      A     WL    QPPS R SP     R 
Sbjct: 29  AGRLGRQCV--SRQAAAGSRGPLLAGSLLAHLAEQRQWWLVPPAQPPSYRQSPKSMSLRN 86

Query: 93  AAGRGSTVSR---GRRAGTPGG 111
              R S   R   GR  G P G
Sbjct: 87  LPQRTSPAGRQPEGRMRGFPRG 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,262,369
Number of Sequences: 37866
Number of extensions: 416225
Number of successful extensions: 2162
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 1924
Number of HSP's gapped (non-prelim): 534
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.