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Search of human proteins with 239742215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742215 PREDICTED: hypothetical protein LOC647309 [Homo
sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226442751 hypothetical protein LOC647309 [Homo sapiens] 205 7e-54
gi|239753662 PREDICTED: hypothetical protein LOC647309 [Homo sap... 205 7e-54
gi|239748317 PREDICTED: hypothetical protein LOC647309 [Homo sap... 205 7e-54
gi|239742215 PREDICTED: hypothetical protein LOC647309 [Homo sap... 205 7e-54
gi|253683435 ets variant gene 1 isoform e [Homo sapiens] 27 4.6
gi|253683433 ets variant gene 1 isoform d [Homo sapiens] 27 4.6
gi|253683431 ets variant gene 1 isoform c [Homo sapiens] 27 4.6
gi|253683429 ets variant gene 1 isoform c [Homo sapiens] 27 4.6
gi|253683427 ets variant gene 1 isoform b [Homo sapiens] 27 4.6
gi|31742534 ets variant gene 1 isoform a [Homo sapiens] 27 4.6
gi|83367077 mucin 16 [Homo sapiens] 27 4.6
gi|214829673 ADP-ribosylation factor GTPase activating protein 3... 26 7.9
gi|4557373 biotinidase precursor [Homo sapiens] 26 7.9
>gi|226442751 hypothetical protein LOC647309 [Homo sapiens]
Length = 334
Score = 205 bits (521), Expect = 7e-54
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS
Sbjct: 241 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 300
Query: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS
Sbjct: 301 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 334
>gi|239753662 PREDICTED: hypothetical protein LOC647309 [Homo
sapiens]
Length = 94
Score = 205 bits (521), Expect = 7e-54
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS
Sbjct: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
Query: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS
Sbjct: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
>gi|239748317 PREDICTED: hypothetical protein LOC647309 [Homo
sapiens]
Length = 94
Score = 205 bits (521), Expect = 7e-54
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS
Sbjct: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
Query: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS
Sbjct: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
>gi|239742215 PREDICTED: hypothetical protein LOC647309 [Homo
sapiens]
Length = 94
Score = 205 bits (521), Expect = 7e-54
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS
Sbjct: 1 MPIDYRGDRTTPLHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
Query: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS
Sbjct: 61 PHCNVKTHSFHQGQAFVRRDEEGGWKFTWVPKQS 94
>gi|253683435 ets variant gene 1 isoform e [Homo sapiens]
Length = 419
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 60 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 119
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 120 SSYPMDHRFRRQLSE 134
>gi|253683433 ets variant gene 1 isoform d [Homo sapiens]
Length = 437
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 78 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 137
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 138 SSYPMDHRFRRQLSE 152
>gi|253683431 ets variant gene 1 isoform c [Homo sapiens]
Length = 459
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 100 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 159
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 160 SSYPMDHRFRRQLSE 174
>gi|253683429 ets variant gene 1 isoform c [Homo sapiens]
Length = 459
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 100 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 159
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 160 SSYPMDHRFRRQLSE 174
>gi|253683427 ets variant gene 1 isoform b [Homo sapiens]
Length = 454
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 118 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 177
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 178 SSYPMDHRFRRQLSE 192
>gi|31742534 ets variant gene 1 isoform a [Homo sapiens]
Length = 477
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 13 LHSTATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKT-----EMAFSTSLSPHCNVKT 67
L++ + + + + + SNPP T H SPN T + AF L P ++
Sbjct: 118 LYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPD 177
Query: 68 HSFHQGQAFVRRDEE 82
S+ F R+ E
Sbjct: 178 SSYPMDHRFRRQLSE 192
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 16 TATHGEDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLSP 61
T + GE F +S +++P TLP T+ S ++ + ST SP
Sbjct: 11254 TVSTGEPFTNISLVTHPAESSSTLPRTTSRFSHSELDTMPSTVTSP 11299
>gi|214829673 ADP-ribosylation factor GTPase activating protein 3
isoform 1 [Homo sapiens]
Length = 516
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 15 STATHGEDFH----ILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLS 60
+T HG D ++ LS PP K ++ +HVSP ++ A++++++
Sbjct: 124 ATRKHGTDLWLDSCVVPPLSPPP---KEEDFFASHVSPEVSDTAWASAIA 170
>gi|4557373 biotinidase precursor [Homo sapiens]
Length = 543
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 11 TPLHSTATHG----EDFHILSQLSNPPVGLKTLPYYTAHVSPNKTEMAFSTSLSPHCNVK 66
TPL S H + I++Q++ PVGL T P+ ++ S P+C
Sbjct: 315 TPLESFWYHDMENPKSHLIIAQVAKNPVGLIGAENATGETDPSHSKFLKILSGDPYCEKD 374
Query: 67 THSFHQGQA 75
H +A
Sbjct: 375 AQEVHCDEA 383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,151,958
Number of Sequences: 37866
Number of extensions: 158657
Number of successful extensions: 347
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 14
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.