Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239741839
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo
sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753377 PREDICTED: hypothetical protein [Homo sapiens] 575 e-164
gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo ... 575 e-164
gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo ... 575 e-164
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 44 1e-04
gi|148529025 pleckstrin homology domain containing, family G (wi... 42 6e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 41 0.001
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 41 0.001
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 39 0.005
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ... 39 0.007
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 36 0.033
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.056
gi|14249119 Rhox homeobox family, member 2 [Homo sapiens] 35 0.056
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.074
gi|91208420 bassoon protein [Homo sapiens] 35 0.074
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.096
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.096
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.096
gi|158508495 sex comb on midleg-like 4 [Homo sapiens] 35 0.096
gi|36796743 methylenetetrahydrofolate dehydrogenase (NADP+ depen... 34 0.13
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 34 0.16
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 34 0.16
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 33 0.21
gi|153791494 Rhox homeobox family, member 2B [Homo sapiens] 33 0.21
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr... 33 0.21
>gi|239753377 PREDICTED: hypothetical protein [Homo sapiens]
Length = 328
Score = 575 bits (1482), Expect = e-164
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 60
MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE
Sbjct: 48 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 107
Query: 61 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 120
YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG
Sbjct: 108 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 167
Query: 121 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 180
LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA
Sbjct: 168 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 227
Query: 181 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP
Sbjct: 228 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 287
Query: 241 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 281
SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR
Sbjct: 288 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 328
>gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo
sapiens]
Length = 328
Score = 575 bits (1482), Expect = e-164
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 60
MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE
Sbjct: 48 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 107
Query: 61 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 120
YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG
Sbjct: 108 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 167
Query: 121 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 180
LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA
Sbjct: 168 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 227
Query: 181 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP
Sbjct: 228 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 287
Query: 241 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 281
SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR
Sbjct: 288 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 328
>gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo
sapiens]
Length = 281
Score = 575 bits (1482), Expect = e-164
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 60
MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE
Sbjct: 1 MIYSPLLAPLQFPLLESIGKSERSSVRSNDGLGRDAHAPVVHWQLLAGQVLRPRVAVLDE 60
Query: 61 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 120
YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG
Sbjct: 61 YGLTALPGPLAHRLTGLDGLVLEVNGADGRVHGTEEEEQIGAAVGAQQTFELLDGQDGVG 120
Query: 121 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 180
LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA
Sbjct: 121 LSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA 180
Query: 181 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP
Sbjct: 181 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
Query: 241 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 281
SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR
Sbjct: 241 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSIRLRRSVR 281
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 44.3 bits (103), Expect = 1e-04
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 147 LTGCSPSPGHPEQAESSQG-KQPGPQQQHPSRAAADHDPGRMGQ----GAAAQWTPKGPL 201
L G P PG ++ QG +QP P QQ P A PG GQ G Q P+GP
Sbjct: 582 LLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPP 641
Query: 202 RRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
QG G G F+G P G P+ LP
Sbjct: 642 LH---------QGGG-----GPQGFMGPQGPQGPPQGLP 666
Score = 33.1 bits (74), Expect = 0.28
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 135 PGQGLAQGDADGLTGCSPSPGHPEQ-------AESSQGKQPGPQQQHPSRAAADHDPGRM 187
PGQG G PS P Q + PGPQ Q + H G
Sbjct: 589 PGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGG 648
Query: 188 GQGAAAQWTPKGPLRRLRLPRCKWTQG-SGSFSSPGNHRFLGSNSPNG 234
QG P+GP + LPR + G G PG H LG P G
Sbjct: 649 PQGFMGPQGPQGPPQ--GLPRPQDMHGPQGMQRHPGPHGPLGPQGPPG 694
>gi|148529025 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4B [Homo sapiens]
Length = 1271
Score = 42.0 bits (97), Expect = 6e-04
Identities = 46/148 (31%), Positives = 57/148 (38%), Gaps = 24/148 (16%)
Query: 140 AQGD--ADGLTGCSPSPGHPEQAESSQGKQPGPQ---QQHPSRAAADHDPGRMGQGAAAQ 194
A GD LTG S G A +Q + GP+ QQ PS H P R G GAA +
Sbjct: 16 ALGDLACSSLTGASRDLGTGAVASGTQEETSGPRGDPQQTPSLEKERHTPSRTGPGAAGR 75
Query: 195 WTPKGPLRRLRLPRCK--------WTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRP 246
P+ R PR T + S PG H LG + G P +P
Sbjct: 76 TLPRRSRSWERAPRSSRGAQAAACHTSHHSAGSRPGGH--LGGQAV-GTPNCVPVEG--- 129
Query: 247 CRPGCSFPTSKPSEAATSIYSSPSGRSI 274
PGC T + A+S S G S+
Sbjct: 130 --PGC---TKEEDVLASSACVSTDGGSL 152
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 135 PGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQ 194
PG +G+ G++G PG P G Q P Q P+ + + GR G
Sbjct: 1594 PGAKGPRGER-GISGAIGPPG-PRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGM----- 1646
Query: 195 WTPKGPLRRLRLPRCKWTQG----SGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPG 250
KG LP T G G PG+ F G + G PR P P PG
Sbjct: 1647 ---KGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMG-PRGPPGPPGSPGSPG 1702
Query: 251 CSFPTSKPSEAATSIYSSPSG 271
+ P+ KP + PSG
Sbjct: 1703 VTGPSGKPGKPGDHGRPGPSG 1723
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 40.8 bits (94), Expect = 0.001
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 135 PGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQ 194
PG +G+ G++G PG P G Q P Q P+ + + GR G
Sbjct: 2758 PGAKGPRGER-GISGAIGPPG-PRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGM----- 2810
Query: 195 WTPKGPLRRLRLPRCKWTQG----SGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPG 250
KG LP T G G PG+ F G + G PR P P PG
Sbjct: 2811 ---KGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMG-PRGPPGPPGSPGSPG 2866
Query: 251 CSFPTSKPSEAATSIYSSPSG 271
+ P+ KP + PSG
Sbjct: 2867 VTGPSGKPGKPGDHGRPGPSG 2887
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 38.9 bits (89), Expect = 0.005
Identities = 40/154 (25%), Positives = 54/154 (35%), Gaps = 14/154 (9%)
Query: 128 VGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPG-------PQQQHPSRAAA 180
+GH S P LA G A CSP Q + ++PG P Q P A A
Sbjct: 483 LGHFSQRPWSALA-GQA-----CSPQRAWGAQRQGPSSQRPGSPPEKRSPFPQQPWSAVA 536
Query: 181 DHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALP 240
R A W GP R L R +SS G R G+ +
Sbjct: 537 TQPCPRRAWTACETWEDPGPRLRNPLERPS-PPAQRPWSSSGVQRAGPQGKGRGIGSPVS 595
Query: 241 SSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRSI 274
++ H RP SFP + + ++ P R +
Sbjct: 596 AAKHALPRPTGSFPQNPLGKEKDTLRPCPRSRGL 629
>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 146 GLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA--DHDPGRMGQGAAAQWTPKGPLRR 203
GL G S P P+ SS GK+P ++ S+AAA D+DP R A T K L
Sbjct: 365 GLLGKSVRPKEPKH--SSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELIS 422
Query: 204 LRLPRCKWTQGSGSFSSPGNHRFLGSNSPNG------VPRALPSS 242
L + R +++ G + +P + LG++ P+ VPR SS
Sbjct: 423 LSVRRGEYSSGDPNIRAP---QVLGTSQPSAFTLRRLVPRCHASS 464
>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 518
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 146 GLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA--DHDPGRMGQGAAAQWTPKGPLRR 203
GL G S P P+ SS GK+P ++ S+AAA D+DP R A T K L
Sbjct: 365 GLLGKSVRPKEPKH--SSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELIS 422
Query: 204 LRLPRCKWTQGSGSFSSPGNHRFLGSNSPNG------VPRALPSS 242
L + R +++ G + +P + LG++ P+ VPR SS
Sbjct: 423 LSVRRGEYSSGDPNIRAP---QVLGTSQPSAFTLRRLVPRCHASS 464
>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
sapiens]
Length = 518
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 146 GLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAA--DHDPGRMGQGAAAQWTPKGPLRR 203
GL G S P P+ SS GK+P ++ S+AAA D+DP R A T K L
Sbjct: 365 GLLGKSVRPKEPKH--SSPGKKPAGRKTRESQAAAREDNDPNRDEVPRAQLPTQKPELIS 422
Query: 204 LRLPRCKWTQGSGSFSSPGNHRFLGSNSPNG------VPRALPSS 242
L + R +++ G + +P + LG++ P+ VPR SS
Sbjct: 423 LSVRRGEYSSGDPNIRAP---QVLGTSQPSAFTLRRLVPRCHASS 464
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 37.0 bits (84), Expect = 0.019
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 127 VVGHL-SHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPS---RAAADH 182
V+G L + +P Q A G + GL SP G + S +G PGP+ QHP RA +
Sbjct: 219 VLGRLPAPLPLQLRAGGASTGLAAPSPGRGGKQSEISFRG--PGPRAQHPGCRLRAGCEP 276
Query: 183 DPGRMGQGAAAQWTPKGP 200
GR+G+G + + P
Sbjct: 277 SCGRLGRGYQQRLPSRSP 294
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 36.2 bits (82), Expect = 0.033
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 154 PGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQ 213
PG E +G PG PS A + R GAAA+ P+ R L R + T
Sbjct: 51 PGAAPAGEPRRG-DPGVA---PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG 106
Query: 214 GSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRS 273
G G + +G PRA P + RP RP P + + T SPS R
Sbjct: 107 GEGREGAQTREGKMGLPDSARRPRA-PRTPLRPERPAPGVPGGRVA-PCTCTSGSPSPRP 164
Query: 274 IRLRRSVR 281
RLR S R
Sbjct: 165 RRLRVSGR 172
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 36.2 bits (82), Expect = 0.033
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 154 PGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQ 213
PG E +G PG PS A + R GAAA+ P+ R L R + T
Sbjct: 51 PGAAPAGEPRRG-DPGVA---PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG 106
Query: 214 GSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRS 273
G G + +G PRA P + RP RP P + + T SPS R
Sbjct: 107 GEGREGAQTREGKMGLPDSARRPRA-PRTPLRPERPAPGVPGGRVA-PCTCTSGSPSPRP 164
Query: 274 IRLRRSVR 281
RLR S R
Sbjct: 165 RRLRVSGR 172
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 36.2 bits (82), Expect = 0.033
Identities = 41/128 (32%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 154 PGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQ 213
PG E +G PG PS A + R GAAA+ P+ R L R + T
Sbjct: 51 PGAAPAGEPRRG-DPGVA---PSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTG 106
Query: 214 GSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPSEAATSIYSSPSGRS 273
G G + +G PRA P + RP RP P + + T SPS R
Sbjct: 107 GEGREGAQTREGKMGLPDSARRPRA-PRTPLRPERPAPGVPGGRVA-PCTCTSGSPSPRP 164
Query: 274 IRLRRSVR 281
RLR S R
Sbjct: 165 RRLRVSGR 172
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 36.2 bits (82), Expect = 0.033
Identities = 43/171 (25%), Positives = 62/171 (36%), Gaps = 43/171 (25%)
Query: 127 VVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQG--------------------- 165
VVG+ + G+G+ Q G G P Q SQG
Sbjct: 618 VVGYDRNNTGKGVEQEVPSTAPGLGMDQGSPSQVNPSQGSPSQGSLRQESTSQASPSQRS 677
Query: 166 -KQPGPQQQHPSRAAADH---DPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSP 221
Q P Q +PS+ + H G QG+ +Q +P +QGS S +SP
Sbjct: 678 TSQGSPSQVNPSQRSTSHANSSQGSPSQGSPSQESP--------------SQGSTSQASP 723
Query: 222 GNHRFLGSNSPNGVPRALPSSSHRPCRPGCS-FPTSKPSE-AATSIYSSPS 270
+ +G P+A S+ P PG + P + P + SI PS
Sbjct: 724 SHRNTIGVIGTTSSPKATGSTHSFP--PGATDGPLALPGQLQGNSIMEPPS 772
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.056
Identities = 43/137 (31%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 135 PGQGLAQ-----GDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQ 189
PG GL Q G G +G P P P Q +QP PQQ P + H P Q
Sbjct: 36 PGMGLNQNRGPMGPGPGQSG--PKPPIPPPPPHQQQQQPPPQQP-PPQQPPPHQPPPHPQ 92
Query: 190 GAAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSP--NGVPRALPSSSHRPC 247
Q P P K G +PG +GS P + P A P +S P
Sbjct: 93 PHQQQQPPPPP-----QDSSKPVVAQGPGPAPG----VGSAPPASSSAPPATPPTSGAPP 143
Query: 248 RPGCSFPTSKPSEAATS 264
G PT P A TS
Sbjct: 144 GSGPG-PTPTPPPAVTS 159
>gi|14249119 Rhox homeobox family, member 2 [Homo sapiens]
Length = 288
Score = 35.4 bits (80), Expect = 0.056
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 134 VPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAA 193
VPG L +GD +G +G S G+ E ++ S+ K+PG Q P A +PG Q
Sbjct: 85 VPGH-LWEGDLEGTSG---SDGNVEDSDQSE-KEPGQQYSRPQGAVGGLEPGNAQQPNVH 139
Query: 194 QWTP 197
+TP
Sbjct: 140 AFTP 143
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.0 bits (79), Expect = 0.074
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 148 TGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQG----AAAQWTPKGPLRR 203
T P+ G E+A ++ PGP P RA+ PG +GQ +A + +G
Sbjct: 82 TSRPPASGRGERAPPAKNTSPGPVSS-PGRASGTTRPGPLGQKGLRISAEETVARGKATE 140
Query: 204 L--RLPRCKWTQGSGSFSSPGN------HRFLGSNSPNGVPRALPSSSHRPCRPGCSFPT 255
R + S +PG R + + G+PR PS+ RP G
Sbjct: 141 APKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSV 200
Query: 256 SKPSEAATSIYSSPSGR 272
S SE +T+ SP+ R
Sbjct: 201 SSASEHSTT-EPSPAAR 216
Score = 28.5 bits (62), Expect = 6.9
Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 149 GCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGP-------- 200
G +P HP Q + + P Q P R A G + A +P P
Sbjct: 252 GTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPS 311
Query: 201 LRRL----RLPRCKWTQGSGSFSSPGNHRFLGSN--SPNGV--PRALPSSSHRPCRPGCS 252
L+ L P + T GS + H FL S SP P+A P+ + P + S
Sbjct: 312 LQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPS 371
Query: 253 FPTSKP-SEAATSIYSSPSGRSIRL 276
P S P S AT +P+ ++ L
Sbjct: 372 PPASPPLSPLATPSPQAPNALAVHL 396
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.0 bits (79), Expect = 0.074
Identities = 39/129 (30%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 134 VPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAA 193
VPG G G G S E + + P P+Q + + QG A
Sbjct: 60 VPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAG 119
Query: 194 QWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGC-- 251
Q GP R L++ TQ SG S R SP VP+ P S C P C
Sbjct: 120 Q-EADGPRRTLQVD--SRTQRSGRSPSVSPDRGSTPTSPYSVPQIAPLPSSTLC-PICKT 175
Query: 252 SFPTSKPSE 260
S TS PS+
Sbjct: 176 SDLTSTPSQ 184
Score = 28.1 bits (61), Expect = 9.0
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 148 TGCSPSPGHP---EQAESSQGKQPGPQQQHPSRAAADHDPGRMG--QGAAAQWTPKGP 200
T P P P EQ S+G PQQ +A PG G GA TP P
Sbjct: 3827 TATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAP 3884
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.096
Identities = 39/128 (30%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 135 PGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQ 194
PG GD G+ G SPG P + GPQ P + D G G A
Sbjct: 114 PGIPGRNGDP-GIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGY 172
Query: 195 WTPKGPLRRLRLPRCKWTQGS----GSFSSPGNHRFLGSNSPNGVPRALPSS-------- 242
P GP P GS G PG G + P G P A+ S
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232
Query: 243 SHRPCRPG 250
S RP RPG
Sbjct: 233 SGRPGRPG 240
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.7 bits (78), Expect = 0.096
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 152 PSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQG----AAAQWTPKGPLRRL--R 205
P+ G E+A ++ PGP P RA+ PG +GQ +A + +G R
Sbjct: 95 PASGRGERAPPAKNTSPGPVSS-PGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 153
Query: 206 LPRCKWTQGSGSFSSPGN------HRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPS 259
+ S +PG R + + G+PR PS+ RP G S S
Sbjct: 154 SALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSAS 213
Query: 260 EAATSIYSSPSGR 272
E +T+ SP+ R
Sbjct: 214 EHSTT-EPSPAAR 225
Score = 30.4 bits (67), Expect = 1.8
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 9/122 (7%)
Query: 149 GCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPR 208
G +P HP Q + + P Q P R A G + A +P L+ P
Sbjct: 261 GTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPT 320
Query: 209 CKWTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPSEAATSIYSS 268
T S S L +P A PS S P P + P AT+ S
Sbjct: 321 LPATPHSSS---------LTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 371
Query: 269 PS 270
P+
Sbjct: 372 PT 373
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 34.7 bits (78), Expect = 0.096
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 152 PSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQG----AAAQWTPKGPLRRL--R 205
P+ G E+A ++ PGP P RA+ PG +GQ +A + +G R
Sbjct: 95 PASGRGERAPPAKNTSPGPVSS-PGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 153
Query: 206 LPRCKWTQGSGSFSSPGN------HRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKPS 259
+ S +PG R + + G+PR PS+ RP G S S
Sbjct: 154 SALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSAS 213
Query: 260 EAATSIYSSPSGR 272
E +T+ SP+ R
Sbjct: 214 EHSTT-EPSPAAR 225
Score = 32.0 bits (71), Expect = 0.62
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 152 PSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTP-------------K 198
PSP P ++ P P PS+A M + Q P +
Sbjct: 346 PSPSAPPSLQTL----PSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQ 401
Query: 199 GPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTSKP 258
P L L + T GS + H FL + PR +S P RP + P S P
Sbjct: 402 APPSPLALSSLQATTSLGSPTLQATHSFLTMS-----PRQTQASLTSPSRPASTPPDSPP 456
Query: 259 SEAATSIYSSP 269
+A S+ +SP
Sbjct: 457 LQAPLSLPASP 467
>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
Length = 414
Score = 34.7 bits (78), Expect = 0.096
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 17/176 (9%)
Query: 114 DGQDGVGLSAVVQVVGHLSHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQ 173
DG+ + VV +G++ + D L P P +E Q K+ G +
Sbjct: 168 DGKQHLRSLPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGRMES 227
Query: 174 HPSRAAADHDPGRMGQG------AAAQWTPKGPLRRLRLPRCKWTQGSGSFSSPGNHRFL 227
+ ++ +G +A+ + +G L CK Q SG +H
Sbjct: 228 VKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCK-RQNSGD-----SHLGG 281
Query: 228 GSNSPNGVPRALPSSSHRPCRPGCSFPTSKPSEAATSI-----YSSPSGRSIRLRR 278
G + G PR P SS P PG P S P TS+ SSPS + RR
Sbjct: 282 GPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQDARR 337
>gi|36796743 methylenetetrahydrofolate dehydrogenase (NADP+
dependent) 1-like [Homo sapiens]
Length = 978
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 197 PKGPLRRLRLPRCKWTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHRPCRPGCSFPTS 256
P GP RRLR+P C+ + G G G LG P + C PG P +
Sbjct: 18 PPGPPRRLRVP-CRASSGGGGGGGGGREGLLGQRRPQ------DGQARSSCSPGGRTPAA 70
Query: 257 KPSEAATSIYSS 268
+ S I +S
Sbjct: 71 RDSIVREVIQNS 82
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 33.9 bits (76), Expect = 0.16
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 152 PSPG-HPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCK 210
PSP EQ+ SS Q GPQ S + + TP+ P R RL R +
Sbjct: 1017 PSPAAREEQSRSSASSQKGPQALTRSNSLS---------------TPR-PTRASRLRRAR 1060
Query: 211 WTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSS-------HRPCRPGCSFPTSKPSEAAT 263
S + ++ G LG+ P G P A + P + SF + EAA
Sbjct: 1061 LGDASDTEAADGERGSLGNPEPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSDPEAAP 1120
Query: 264 SIYSSPSGRSIRL 276
+ +S SGRS+ L
Sbjct: 1121 A-RTSFSGRSVEL 1132
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapiens]
Length = 1554
Score = 33.9 bits (76), Expect = 0.16
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 152 PSPG-HPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCK 210
PSP EQ+ SS Q GPQ S + + TP+ P R RL R +
Sbjct: 1087 PSPAAREEQSRSSASSQKGPQALTRSNSLS---------------TPR-PTRASRLRRAR 1130
Query: 211 WTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSS-------HRPCRPGCSFPTSKPSEAAT 263
S + ++ G LG+ P G P A + P + SF + EAA
Sbjct: 1131 LGDASDTEAADGERGSLGNPEPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSDPEAAP 1190
Query: 264 SIYSSPSGRSIRL 276
+ +S SGRS+ L
Sbjct: 1191 A-RTSFSGRSVEL 1202
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 33.5 bits (75), Expect = 0.21
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 132 SHVPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGA 191
S +P +G A T P PG + GP+++ +R A+ +PG+ Q +
Sbjct: 499 SSIPASKPRRGTAPTRTAAPPWPG-------GVSVRTGPEKRSSTRPPAEMEPGKGEQAS 551
Query: 192 AAQWTPKGPL 201
+++ P+GP+
Sbjct: 552 SSESDPEGPI 561
>gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
Length = 288
Score = 33.5 bits (75), Expect = 0.21
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 134 VPGQGLAQGDADGLTGCSPSPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAA 193
VPG L +G+ +G +G S G+ E ++ S+ K+PG Q P A +PG Q
Sbjct: 85 VPGH-LWEGNLEGTSG---SDGNVEDSDQSE-KEPGQQYSRPQGAVGGLEPGNAQQPNVH 139
Query: 194 QWTP 197
+TP
Sbjct: 140 AFTP 143
>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
preproprotein [Homo sapiens]
Length = 644
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 153 SPGHPEQAESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTP--KGPLRRLRLPRCK 210
SP +P A S GP + + +PG G G A W P GP
Sbjct: 285 SPRNPSSAGSWNSGSSGPG------STGNRNPGSSGTGGTATWKPGSSGP-----GSTGS 333
Query: 211 WTQGSGSFSSPGNHRFLGSNSPNGVPRALPSSSHR 245
W GS S GN GS P P SS R
Sbjct: 334 WNSGSSGTGSTGNQN-PGSPRPGSTGTWNPGSSER 367
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,381,774
Number of Sequences: 37866
Number of extensions: 775536
Number of successful extensions: 3286
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 3066
Number of HSP's gapped (non-prelim): 449
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.