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Search of human proteins with 116292170
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116292170 RUN domain containing 2A [Homo sapiens]
(375 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116292170 RUN domain containing 2A [Homo sapiens] 744 0.0
gi|59933284 RUN domain containing 2B [Homo sapiens] 420 e-117
gi|40538728 pleckstrin homology domain containing, family M (wit... 94 2e-19
gi|19923090 RUN domain containing 3B isoform a [Homo sapiens] 64 2e-10
gi|221139728 pleckstrin homology domain containing, family M (wi... 63 4e-10
gi|197304746 RUN domain containing 3B isoform c [Homo sapiens] 62 6e-10
gi|197304744 RUN domain containing 3B isoform b [Homo sapiens] 62 6e-10
gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo sap... 53 5e-07
gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo sap... 53 5e-07
gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo sap... 53 5e-07
gi|7662352 RUN and FYVE domain containing 3 isoform 2 [Homo sapi... 51 1e-06
gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo sap... 51 1e-06
gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo sa... 51 1e-06
gi|221307578 RUN domain containing 3A isoform 1 [Homo sapiens] 50 3e-06
gi|5730015 RUN domain containing 3A isoform 2 [Homo sapiens] 50 3e-06
gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo sa... 50 3e-06
gi|221307580 RUN domain containing 3A isoform 3 [Homo sapiens] 49 1e-05
gi|122891862 DENN/MADD domain containing 5B [Homo sapiens] 43 4e-04
gi|150456467 hypothetical protein LOC9711 isoform 2 [Homo sapiens] 42 7e-04
gi|44889475 RAB6 interacting protein 1 [Homo sapiens] 42 0.001
gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo sa... 39 0.006
gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo sa... 39 0.006
gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo sap... 39 0.006
gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo sap... 39 0.006
gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo sa... 39 0.008
gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo sa... 39 0.008
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 39 0.010
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 39 0.010
gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens] 38 0.017
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 37 0.038
>gi|116292170 RUN domain containing 2A [Homo sapiens]
Length = 375
Score = 744 bits (1920), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MSGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS 60
MSGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS
Sbjct: 1 MSGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS 60
Query: 61 RGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLR 120
RGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLR
Sbjct: 61 RGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLR 120
Query: 121 CALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNK 180
CALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNK
Sbjct: 121 CALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNK 180
Query: 181 DLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQETDPL 240
DLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQETDPL
Sbjct: 181 DLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQETDPL 240
Query: 241 PVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSS 300
PVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSS
Sbjct: 241 PVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSS 300
Query: 301 VNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGN 360
VNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGN
Sbjct: 301 VNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGN 360
Query: 361 SSGRKHRGHSESPEK 375
SSGRKHRGHSESPEK
Sbjct: 361 SSGRKHRGHSESPEK 375
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 420 bits (1079), Expect = e-117
Identities = 215/223 (96%), Positives = 219/223 (98%), Gaps = 1/223 (0%)
Query: 153 MDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQ 212
MDEERSSMLPTMAAG NSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT LLKESTQ
Sbjct: 1 MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT-LLKESTQ 59
Query: 213 GVSSLFREITASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDE 272
GVSS+FREITASSA+SILIKPEQETDPLPVVSRNVSADAKCKKERKKKK+VTNIISFDDE
Sbjct: 60 GVSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDE 119
Query: 273 EDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 332
EDEQNSGD+FKKTPGAGESSEDNSD SSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN
Sbjct: 120 EDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 179
Query: 333 GEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 375
EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK
Sbjct: 180 REFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 222
>gi|40538728 pleckstrin homology domain containing, family M (with
RUN domain) member 1 [Homo sapiens]
Length = 1056
Score = 94.4 bits (233), Expect = 2e-19
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 10/208 (4%)
Query: 15 ERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAA 74
++L+ +VK Q ++ + + D +C+ EAV HGL A K++A
Sbjct: 20 KKLVGSVKALQKQYVSLDTVVTSEDGDANTMCSALEAVFIHGLHAKHIRAEAGGKRKKSA 79
Query: 75 GFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHM 134
K +PVFW +K V +KH + L + +DVGR RAWLR ALN+ +E YL +
Sbjct: 80 H--QKPLPQPVFWPLLKAVTHKHIISELEHLTFVNTDVGRCRAWLRLALNDGLMECYLKL 137
Query: 135 LLADRCRLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLN-------GQSK 187
LL ++ RL +Y+ + + D E L + GL S+ F ++ + LN S
Sbjct: 138 LLQEQARLHEYYQPTALLRDAEEGEFLLSFLQGLTSLSFELSYKSAILNEWTLTPLALSG 197
Query: 188 FAPTVSDLLKESTQNVTSLLKESTQGVS 215
P +S+L ST KES +S
Sbjct: 198 LCP-LSELDPLSTSGAELQRKESLDSIS 224
>gi|19923090 RUN domain containing 3B isoform a [Homo sapiens]
Length = 473
Score = 63.9 bits (154), Expect = 2e-10
Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 27/238 (11%)
Query: 33 EIASDSDSRVTCLCAQFEAVLQHGLKR----SRGLALTAAAIK-QAAGFASKTETEPVFW 87
E DS A E +L H LK R LA ++ Q F E+ FW
Sbjct: 54 ETIDDSSPEFNNFAAILEQILSHRLKEISQSCRWLAHLQIPLQGQVTWFGY--ESPRSFW 111
Query: 88 YYVKEVLNKHELQRFYSLRH---IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLST 144
Y++ K S+ + ++S +GRAW+R AL E L Y+ L D
Sbjct: 112 DYIRVACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRR 171
Query: 145 FYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT 204
FYED + V+ EE ++ML M GLN+I F+ + + L+G P V D T
Sbjct: 172 FYEDGAIVLGEE-ANMLAGMLLGLNAIDFSFCLKGEGLDGS---FPAVID--------YT 219
Query: 205 SLLK--ESTQGVSSLFREI-TASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKK 259
LK +S+ +SS E+ T S+ S PE P ++ N S KCK+ ++K
Sbjct: 220 PYLKYIQSSDSISSDEEELRTLGSSGSESSTPENVGPPF-LMDEN-SWFNKCKRVKQK 275
>gi|221139728 pleckstrin homology domain containing, family M (with
RUN domain) member 2 [Homo sapiens]
Length = 1019
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 86 FWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTF 145
+W V + +++ L+H+A+++GR RAWL ALNE+SLE YL + + L +
Sbjct: 64 YWVLVVHFTRREAIKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLGLLHKY 123
Query: 146 YEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLK-ESTQNVT 204
Y + V + ++ T+ +GL I F +++D L+ AP + D K + +
Sbjct: 124 YVKNALVCSHDHLTLFLTLVSGLEFIRFELDLDAPYLD----LAPYMPDYYKPQYLLDFE 179
Query: 205 SLLKESTQGVSSL----FREITASS 225
L S G SL F +T+++
Sbjct: 180 DRLPSSVHGSDSLSLNSFNSVTSTN 204
>gi|197304746 RUN domain containing 3B isoform c [Homo sapiens]
Length = 407
Score = 62.4 bits (150), Expect = 6e-10
Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 33 EIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKE 92
E DS A E +L H LK Q F E+ FW Y++
Sbjct: 54 ETIDDSSPEFNNFAAILEQILSHRLKG------------QVTWFGY--ESPRSFWDYIRV 99
Query: 93 VLNKHELQRFYSLRH---IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDW 149
K S+ + ++S +GRAW+R AL E L Y+ L D FYED
Sbjct: 100 ACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDG 159
Query: 150 SFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLK- 208
+ V+ EE ++ML M GLN+I F+ + + L+G P V D T LK
Sbjct: 160 AIVLGEE-ANMLAGMLLGLNAIDFSFCLKGEGLDGS---FPAVID--------YTPYLKY 207
Query: 209 -ESTQGVSSLFREI-TASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKK 259
+S+ +SS E+ T S+ S PE P ++ N S KCK+ ++K
Sbjct: 208 IQSSDSISSDEEELRTLGSSGSESSTPENVGPPF-LMDEN-SWFNKCKRVKQK 258
>gi|197304744 RUN domain containing 3B isoform b [Homo sapiens]
Length = 456
Score = 62.4 bits (150), Expect = 6e-10
Identities = 69/233 (29%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 33 EIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKE 92
E DS A E +L H LK Q F E+ FW Y++
Sbjct: 54 ETIDDSSPEFNNFAAILEQILSHRLKG------------QVTWFGY--ESPRSFWDYIRV 99
Query: 93 VLNKHELQRFYSLRH---IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDW 149
K S+ + ++S +GRAW+R AL E L Y+ L D FYED
Sbjct: 100 ACRKVSQNCICSIENMENVSSSRAKGRAWIRVALMEKHLSEYISTALRDFKTTRRFYEDG 159
Query: 150 SFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLK- 208
+ V+ EE ++ML M GLN+I F+ + + L+G P V D T LK
Sbjct: 160 AIVLGEE-ANMLAGMLLGLNAIDFSFCLKGEGLDGS---FPAVID--------YTPYLKY 207
Query: 209 -ESTQGVSSLFREI-TASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKK 259
+S+ +SS E+ T S+ S PE P ++ N S KCK+ ++K
Sbjct: 208 IQSSDSISSDEEELRTLGSSGSESSTPENVGPPF-LMDEN-SWFNKCKRVKQK 258
>gi|94721330 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + + I Q F E ++ +L
Sbjct: 39 QFFVVMEHCLKH--GLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVR-----NLPE 91
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWL AL + L YL +L+ ++ LS FYE + +M+EE ++ + G
Sbjct: 92 LKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEE-GMVIVGLLVG 150
Query: 168 LNSILFAINIDNKDLNGQ 185
LN + + + +DL+ Q
Sbjct: 151 LNVLDANLCLKGEDLDSQ 168
>gi|94721332 RUN and FYVE domain-containing 1 isoform b [Homo
sapiens]
Length = 600
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + + I Q F E ++ +L
Sbjct: 39 QFFVVMEHCLKH--GLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVR-----NLPE 91
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWL AL + L YL +L+ ++ LS FYE + +M+EE ++ + G
Sbjct: 92 LKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEE-GMVIVGLLVG 150
Query: 168 LNSILFAINIDNKDLNGQ 185
LN + + + +DL+ Q
Sbjct: 151 LNVLDANLCLKGEDLDSQ 168
>gi|94721336 RUN and FYVE domain-containing 1 isoform a [Homo
sapiens]
Length = 708
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + + I Q F E ++ +L
Sbjct: 147 QFFVVMEHCLKH--GLKVKKSFIGQNKSFFGPLELVEKLCPEASDIATSVR-----NLPE 199
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWL AL + L YL +L+ ++ LS FYE + +M+EE ++ + G
Sbjct: 200 LKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEE-GMVIVGLLVG 258
Query: 168 LNSILFAINIDNKDLNGQ 185
LN + + + +DL+ Q
Sbjct: 259 LNVLDANLCLKGEDLDSQ 276
>gi|7662352 RUN and FYVE domain containing 3 isoform 2 [Homo
sapiens]
Length = 469
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + Q F E E+ + L
Sbjct: 103 QFFVVMEHCLKH--GLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVK-----DLPG 155
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWLR AL + L Y+ L+ + LS FYE + +M+EE +++ + G
Sbjct: 156 LKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEE-GAIIAGLLVG 214
Query: 168 LNSILFAINIDNKDLNGQ 185
LN I + +DL+ Q
Sbjct: 215 LNVIDANFCMKGEDLDSQ 232
>gi|82697315 RUN and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 620
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + Q F E E+ + L
Sbjct: 103 QFFVVMEHCLKH--GLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVK-----DLPG 155
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWLR AL + L Y+ L+ + LS FYE + +M+EE +++ + G
Sbjct: 156 LKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEE-GAIIAGLLVG 214
Query: 168 LNSILFAINIDNKDLNGQ 185
LN I + +DL+ Q
Sbjct: 215 LNVIDANFCMKGEDLDSQ 232
>gi|195220720 RUN and FYVE domain containing 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 48 QFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRH 107
QF V++H LK GL + Q F E E+ + L
Sbjct: 163 QFFVVMEHCLKH--GLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVK-----DLPG 215
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + VGRGRAWLR AL + L Y+ L+ + LS FYE + +M+EE +++ + G
Sbjct: 216 LKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEE-GAIIAGLLVG 274
Query: 168 LNSILFAINIDNKDLNGQ 185
LN I + +DL+ Q
Sbjct: 275 LNVIDANFCMKGEDLDSQ 292
>gi|221307578 RUN domain containing 3A isoform 1 [Homo sapiens]
Length = 446
Score = 50.4 bits (119), Expect = 3e-06
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 33 EIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKE 92
E DS A E +L H K A + F+S + + FW Y++
Sbjct: 49 EPIDDSSEEFVNFAAILEQILSHRFK-------ACAPAGPVSWFSS--DGQRGFWDYIRL 99
Query: 93 VLNK---HELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDW 149
+K + + ++ +I++ +GRAW+R AL E + Y+ L D FY+
Sbjct: 100 ACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTRTTRRFYDSG 159
Query: 150 SFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKE 209
+ ++ +E +++L M GL++I F+ + + L+G++ P V D T LK
Sbjct: 160 AIMLRDE-ATILTGMLIGLSAIDFSFCLKGEVLDGKT---PVVID--------YTPYLK- 206
Query: 210 STQGVSSLFREITASSAVSILIKPEQETDP-LPVVSRNVSADAKCKKERKK 259
TQ L E SA S + P LP+V+ S +K K +K
Sbjct: 207 FTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQK 257
>gi|5730015 RUN domain containing 3A isoform 2 [Homo sapiens]
Length = 405
Score = 50.4 bits (119), Expect = 3e-06
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 33 EIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKE 92
E DS A E +L H K A + F+S + + FW Y++
Sbjct: 49 EPIDDSSEEFVNFAAILEQILSHRFK-------ACAPAGPVSWFSS--DGQRGFWDYIRL 99
Query: 93 VLNK---HELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDW 149
+K + + ++ +I++ +GRAW+R AL E + Y+ L D FY+
Sbjct: 100 ACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTRTTRRFYDSG 159
Query: 150 SFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKE 209
+ ++ +E +++L M GL++I F+ + + L+G++ P V D T LK
Sbjct: 160 AIMLRDE-ATILTGMLIGLSAIDFSFCLKGEVLDGKT---PVVID--------YTPYLK- 206
Query: 210 STQGVSSLFREITASSAVSILIKPEQETDP-LPVVSRNVSADAKCKKERKK 259
TQ L E SA S + P LP+V+ S +K K +K
Sbjct: 207 FTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQK 257
>gi|109240556 RUN and FYVE domain-containing 2 isoform a [Homo
sapiens]
Length = 641
Score = 50.1 bits (118), Expect = 3e-06
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 108 IASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
+ + +GR RAWLR AL + + YL L+ R LS FYE + +M+EE +++ + G
Sbjct: 133 LKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEE-GAVIVGLLVG 191
Query: 168 LNSILFAINIDNKDLNGQ 185
LN I + + +DL+ Q
Sbjct: 192 LNVIDANLCVKGEDLDSQ 209
>gi|221307580 RUN domain containing 3A isoform 3 [Homo sapiens]
Length = 400
Score = 48.5 bits (114), Expect = 1e-05
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 86 FWYYVKEVLNK---HELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRL 142
FW Y++ +K + + ++ +I++ +GRAW+R AL E + Y+ L D
Sbjct: 88 FWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTRTT 147
Query: 143 STFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQN 202
FY+ + ++ +E +++L M GL++I F+ + + L+G++ P V D
Sbjct: 148 RRFYDSGAIMLRDE-ATILTGMLIGLSAIDFSFCLKGEVLDGKT---PVVID-------- 195
Query: 203 VTSLLKESTQGVSSLFREITASSAVSILIKPEQETDP-LPVVSRNVSADAKCKKERKK 259
T LK TQ L E SA S + P LP+V+ S +K K +K
Sbjct: 196 YTPYLK-FTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQK 252
>gi|122891862 DENN/MADD domain containing 5B [Homo sapiens]
Length = 1274
Score = 43.1 bits (100), Expect = 4e-04
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 98 ELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEER 157
+++ ++ I +DVGR RAW+R +L + L ++L LL+++ Y+ ++F+ EE
Sbjct: 849 DMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTKKLYKRYAFLRCEEE 908
Query: 158 SSMLPTMAAGLNSI 171
LN++
Sbjct: 909 REQFLYHLLSLNAV 922
>gi|150456467 hypothetical protein LOC9711 isoform 2 [Homo sapiens]
Length = 972
Score = 42.4 bits (98), Expect = 7e-04
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 30/135 (22%)
Query: 45 LCAQFEAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEV--LNKHE---L 99
LC +++L HGL R + A + +T+ +W +VK++ L+ H +
Sbjct: 57 LCRDMQSILYHGLIRDQ---------------ACRRQTD--YWQFVKDIRWLSPHSALHV 99
Query: 100 QRFYSLRHI-------ASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFV 152
++F S+ AS+ WL+ +L H L L LL DR + FY D +F+
Sbjct: 100 EKFISVHENDQSSADGASERAVAELWLQHSLQYHCLSAQLRPLLGDRQYIRKFYTDAAFL 159
Query: 153 M-DEERSSMLPTMAA 166
+ D ++ML + A
Sbjct: 160 LSDAHVTAMLQCLEA 174
>gi|44889475 RAB6 interacting protein 1 [Homo sapiens]
Length = 1287
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 98 ELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFV-MDEE 156
+++ ++ I +DVG+ RAW+R ++ + L R+L LL+D Y+ ++F+ D+E
Sbjct: 867 DMRHIQNIGEIKTDVGKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDE 926
Query: 157 RSSML 161
+ L
Sbjct: 927 KEQFL 931
>gi|148612875 RUN and TBC1 domain containing 2 isoform 4 [Homo
sapiens]
Length = 1032
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 8 DKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS-----RG 62
+ RQ LL + VKQ RK + DS S + CA EA + HGL+R R
Sbjct: 9 ETRQRLLRTVKKEVKQIMEEAVTRKFVHEDS-SHIISFCAAVEACVLHGLRRRAAGFLRS 67
Query: 63 LALTAAAIKQAAGF-------ASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRG 115
+ A +K F + E + ++ E R S +
Sbjct: 68 NKIAALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIK 127
Query: 116 RAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
W+R AL E L++ +H L+ + S +YE + +MD +L ++ G
Sbjct: 128 HLWIRTALFEKVLDKIVHYLVENS---SKYYEKEALLMDPVDGPILASLLVG 176
>gi|148612840 RUN and TBC1 domain containing 2 isoform 3 [Homo
sapiens]
Length = 1093
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 8 DKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS-----RG 62
+ RQ LL + VKQ RK + DS S + CA EA + HGL+R R
Sbjct: 9 ETRQRLLRTVKKEVKQIMEEAVTRKFVHEDS-SHIISFCAAVEACVLHGLRRRAAGFLRS 67
Query: 63 LALTAAAIKQAAGF-------ASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRG 115
+ A +K F + E + ++ E R S +
Sbjct: 68 NKIAALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIK 127
Query: 116 RAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
W+R AL E L++ +H L+ + S +YE + +MD +L ++ G
Sbjct: 128 HLWIRTALFEKVLDKIVHYLVENS---SKYYEKEALLMDPVDGPILASLLVG 176
>gi|90577164 RUN and TBC1 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1087
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 8 DKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS-----RG 62
+ RQ LL + VKQ RK + DS S + CA EA + HGL+R R
Sbjct: 9 ETRQRLLRTVKKEVKQIMEEAVTRKFVHEDS-SHIISFCAAVEACVLHGLRRRAAGFLRS 67
Query: 63 LALTAAAIKQAAGF-------ASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRG 115
+ A +K F + E + ++ E R S +
Sbjct: 68 NKIAALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIK 127
Query: 116 RAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
W+R AL E L++ +H L+ + S +YE + +MD +L ++ G
Sbjct: 128 HLWIRTALFEKVLDKIVHYLVENS---SKYYEKEALLMDPVDGPILASLLVG 176
>gi|90577167 RUN and TBC1 domain containing 2 isoform 1 [Homo
sapiens]
Length = 1148
Score = 39.3 bits (90), Expect = 0.006
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 8 DKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRS-----RG 62
+ RQ LL + VKQ RK + DS S + CA EA + HGL+R R
Sbjct: 9 ETRQRLLRTVKKEVKQIMEEAVTRKFVHEDS-SHIISFCAAVEACVLHGLRRRAAGFLRS 67
Query: 63 LALTAAAIKQAAGF-------ASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRG 115
+ A +K F + E + ++ E R S +
Sbjct: 68 NKIAALFMKVGKNFPPAEDLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNLSPLAIK 127
Query: 116 RAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMAAG 167
W+R AL E L++ +H L+ + S +YE + +MD +L ++ G
Sbjct: 128 HLWIRTALFEKVLDKIVHYLVENS---SKYYEKEALLMDPVDGPILASLLVG 176
>gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo
sapiens]
Length = 1006
Score = 38.9 bits (89), Expect = 0.008
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 3 GSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRG 62
GS + ++ LL + VKQ RK + DS S + LC EA L H L+R
Sbjct: 2 GSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDS-SHIIALCGAVEACLLHQLRRRAA 60
Query: 63 LALTAAAIKQAAGFASKTETEPV---FWYYVKEVLNKHELQR-----FYSLRHIASDVGR 114
L + K AA F +T PV + V+E+ + E ++ +LR S G+
Sbjct: 61 GFLRSD--KMAALFTKVGKTCPVAGEICHKVQELQQQAEGRKPSGVSQEALRRQGSASGK 118
Query: 115 GRA---------WLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMA 165
A W+R AL E L++ + LA+ C S +YE + + D +L ++
Sbjct: 119 APALSPQALKHVWVRTALIEKVLDKVV-QYLAENC--SKYYEKEALLADPVFGPILASLL 175
Query: 166 AG 167
G
Sbjct: 176 VG 177
>gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo
sapiens]
Length = 1051
Score = 38.9 bits (89), Expect = 0.008
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 23/182 (12%)
Query: 3 GSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRG 62
GS + ++ LL + VKQ RK + DS S + LC EA L H L+R
Sbjct: 2 GSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDS-SHIIALCGAVEACLLHQLRRRAA 60
Query: 63 LALTAAAIKQAAGFASKTETEPV---FWYYVKEVLNKHELQR-----FYSLRHIASDVGR 114
L + K AA F +T PV + V+E+ + E ++ +LR S G+
Sbjct: 61 GFLRSD--KMAALFTKVGKTCPVAGEICHKVQELQQQAEGRKPSGVSQEALRRQGSASGK 118
Query: 115 GRA---------WLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVMDEERSSMLPTMA 165
A W+R AL E L++ + LA+ C S +YE + + D +L ++
Sbjct: 119 APALSPQALKHVWVRTALIEKVLDKVV-QYLAENC--SKYYEKEALLADPVFGPILASLL 175
Query: 166 AG 167
G
Sbjct: 176 VG 177
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 [Homo
sapiens]
Length = 2542
Score = 38.5 bits (88), Expect = 0.010
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 187 KFAPTVSD--LLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQETDPLPVVS 244
++ T++D LLK+ Q V +++K Q + A+ SIL+K E + + S
Sbjct: 1392 RYIATITDKELLKKCHQCVETIVKAKDQQAAE------ANKNASILLK-ELDLEKSREES 1444
Query: 245 RNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIM 304
R + AK +K ++K+KK EEDE+N + P + E++ D
Sbjct: 1445 RKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQ---- 1500
Query: 305 SAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDV 342
E P P S + ++ S + FG ++ +V
Sbjct: 1501 ---EVPIEPPSATTTTTIGISATSATFTNVFGKKRANV 1535
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 38.5 bits (88), Expect = 0.010
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 187 KFAPTVSD--LLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQETDPLPVVS 244
++ T++D LLK+ Q V +++K Q + A+ SIL+K E + + S
Sbjct: 1392 RYIATITDKELLKKCHQCVETIVKAKDQQAAE------ANKNASILLK-ELDLEKSREES 1444
Query: 245 RNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIM 304
R + AK +K ++K+KK EEDE+N + P + E++ D
Sbjct: 1445 RKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQ---- 1500
Query: 305 SAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDV 342
E P P S + ++ S + FG ++ +V
Sbjct: 1501 ---EVPIEPPSATTTTTIGISATSATFTNVFGKKRANV 1535
>gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens]
Length = 927
Score = 37.7 bits (86), Expect = 0.017
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 30/130 (23%)
Query: 50 EAVLQHGLKRSRGLALTAAAIKQAAGFASKTETEPVFWYYVKEV--LNKHE---LQRFYS 104
+++L HGL R + A + +T+ +W +VK++ L+ H +++F S
Sbjct: 2 QSILYHGLIRDQ---------------ACRRQTD--YWQFVKDIRWLSPHSALHVEKFIS 44
Query: 105 LRHI-------ASDVGRGRAWLRCALNEHSLERYLHMLLADRCRLSTFYEDWSFVM-DEE 156
+ AS+ WL+ +L H L L LL DR + FY D +F++ D
Sbjct: 45 VHENDQSSADGASERAVAELWLQHSLQYHCLSAQLRPLLGDRQYIRKFYTDAAFLLSDAH 104
Query: 157 RSSMLPTMAA 166
++ML + A
Sbjct: 105 VTAMLQCLEA 114
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 36.6 bits (83), Expect = 0.038
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 12/207 (5%)
Query: 176 NIDN-KDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPE 234
N DN K +G+ K + SD S + +S +S S+ + +S + S
Sbjct: 534 NDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDS---SDS 590
Query: 235 QETDPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSED 294
++D + + S+D+ + ++ S D + E +S D K+ + +S D
Sbjct: 591 SDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKS-DSSKSESDSSDSDSKSDSSDSNSSD 649
Query: 295 NSDRS-------SVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDD 347
+SD S S N + +S +S+ S S++ S S + + D D
Sbjct: 650 SSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSD 709
Query: 348 EDVDENEDDVYGNSSGRKHRGHSESPE 374
D ++ D NSS S+S +
Sbjct: 710 SDSSDSSDSSNSNSSDSDSSNSSDSSD 736
Score = 35.0 bits (79), Expect = 0.11
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 6/197 (3%)
Query: 178 DNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQGVSSLFREITASSAVSILIKPEQET 237
D+ + N + SD S + +S +S+ S + + SS S +
Sbjct: 717 DSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDS--SDSSDSSNSSDSSDSSDSS 774
Query: 238 DPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSD 297
D + + S D+ + ++ + D D +S D +S D+SD
Sbjct: 775 DSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSD 834
Query: 298 RSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDV 357
S+ S+ S +S+GS S +S + DS + + S + D NE
Sbjct: 835 SSN----SSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSN 890
Query: 358 YGNSSGRKHRGHSESPE 374
+SS + S+S +
Sbjct: 891 SSDSSDSSNSSDSDSSD 907
Score = 34.3 bits (77), Expect = 0.19
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 248 SADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIM--- 304
S+D+ + +N D D NS + + + S D+SD S+ N
Sbjct: 668 SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSD 727
Query: 305 SAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGNSSGR 364
S+ S +SN S SS+S + S + + S D D ++ D NSS
Sbjct: 728 SSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDS--SNSSDS 785
Query: 365 KHRGHS 370
+S
Sbjct: 786 NDSSNS 791
Score = 32.3 bits (72), Expect = 0.71
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 271 DEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 330
D +D+ GD P + + S N D +S ES +S G S NS D
Sbjct: 454 DFDDKSMQGD----DPNSSDESNGNDDANS-------ESDNNSSSRGDASYNS---DESK 499
Query: 331 LNGEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSES 372
NG D K +D+D D D +S+G + G+ ++
Sbjct: 500 DNGNGS----DSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDN 537
Score = 32.3 bits (72), Expect = 0.71
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 271 DEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSW-KIDSL 329
D D NS D + + + S+ +S SS + S+ S +SN S SSNS DS
Sbjct: 913 DSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSN 972
Query: 330 SLNGEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSES 372
S + D D + D +S S+S
Sbjct: 973 SSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDS 1015
Score = 30.4 bits (67), Expect = 2.7
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 271 DEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 330
D N+G+ +G+ D+SD S +SN S SS+S DS
Sbjct: 525 DSNGNGNNGNDDNDKSDSGKGKSDSSDSDS-----------SDSSNSSDSSDSSDSDSSD 573
Query: 331 LNGEFGYQKLDVKSIDDEDVDENEDDVYGNSS 362
N D S D D D ++ +SS
Sbjct: 574 SNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSS 605
Score = 30.0 bits (66), Expect = 3.5
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 2/124 (1%)
Query: 249 ADAKCKKERKKKKKVTNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSD--RSSVNIMSA 306
+D+ + +N D D S + + + S D+SD SS + S+
Sbjct: 859 SDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSS 918
Query: 307 FESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKH 366
S +SN S +SNS + S + + S + D + D NSS
Sbjct: 919 NSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSD 978
Query: 367 RGHS 370
+S
Sbjct: 979 SSNS 982
Score = 29.3 bits (64), Expect = 6.0
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 264 TNIISFDDEEDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNS 323
+N D + +S D + + S NS SS + S+ S +SN S SSNS
Sbjct: 971 SNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNS 1030
Query: 324 WKIDSLSLNGEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPE 374
S S + D D N D +S S+S +
Sbjct: 1031 ----SDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSD 1077
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,775,841
Number of Sequences: 37866
Number of extensions: 591030
Number of successful extensions: 2471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2286
Number of HSP's gapped (non-prelim): 171
length of query: 375
length of database: 18,247,518
effective HSP length: 104
effective length of query: 271
effective length of database: 14,309,454
effective search space: 3877862034
effective search space used: 3877862034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.