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Search of human proteins with 116268095
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116268095 spermatid maturation 1 [Homo sapiens]
(309 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116268095 spermatid maturation 1 [Homo sapiens] 659 0.0
gi|154240732 hypothetical protein LOC201243 [Homo sapiens] 57 3e-08
gi|24431933 reticulon 4 isoform B [Homo sapiens] 40 0.003
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 40 0.003
gi|144226234 metastasis suppressor 1 [Homo sapiens] 40 0.003
gi|55741571 leucine rich repeat and fibronectin type III domain ... 37 0.022
gi|47519490 reticulon 4 isoform D [Homo sapiens] 36 0.038
gi|24431935 reticulon 4 isoform A [Homo sapiens] 36 0.038
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 36 0.049
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.065
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 35 0.084
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.11
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.11
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 35 0.11
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 34 0.14
gi|19924103 synapsin II isoform IIa [Homo sapiens] 34 0.14
gi|19924101 synapsin II isoform IIb [Homo sapiens] 34 0.14
gi|157388910 TIMELESS interacting protein [Homo sapiens] 34 0.14
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 34 0.19
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 34 0.19
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 34 0.19
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 34 0.19
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 34 0.19
gi|39930523 hypothetical protein LOC144097 [Homo sapiens] 34 0.19
gi|56606125 hypothetical protein LOC201725 [Homo sapiens] 34 0.19
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 34 0.19
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 34 0.19
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 34 0.19
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 34 0.19
gi|4503657 forkhead box H1 [Homo sapiens] 33 0.25
>gi|116268095 spermatid maturation 1 [Homo sapiens]
Length = 309
Score = 659 bits (1699), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MAMVERPRPEWASYHNCNSNSCQDLGNSVLLLLGLIICINISINIVTLLWSRFRGVLYQV 60
MAMVERPRPEWASYHNCNSNSCQDLGNSVLLLLGLIICINISINIVTLLWSRFRGVLYQV
Sbjct: 1 MAMVERPRPEWASYHNCNSNSCQDLGNSVLLLLGLIICINISINIVTLLWSRFRGVLYQV 60
Query: 61 FHDTICEKEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAHRHRRRGSPTR 120
FHDTICEKEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAHRHRRRGSPTR
Sbjct: 61 FHDTICEKEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAHRHRRRGSPTR 120
Query: 121 CAHCPVAWAPDTDDEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPESPPQTIR 180
CAHCPVAWAPDTDDEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPESPPQTIR
Sbjct: 121 CAHCPVAWAPDTDDEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPESPPQTIR 180
Query: 181 FQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPA 240
FQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPA
Sbjct: 181 FQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPA 240
Query: 241 PTLGPAVIPEFSRHRSSGRIVYDARDMRRRLRELTREVEALSGCYPLASGSSTAEETSKN 300
PTLGPAVIPEFSRHRSSGRIVYDARDMRRRLRELTREVEALSGCYPLASGSSTAEETSKN
Sbjct: 241 PTLGPAVIPEFSRHRSSGRIVYDARDMRRRLRELTREVEALSGCYPLASGSSTAEETSKN 300
Query: 301 WVYRSLTGR 309
WVYRSLTGR
Sbjct: 301 WVYRSLTGR 309
>gi|154240732 hypothetical protein LOC201243 [Homo sapiens]
Length = 501
Score = 56.6 bits (135), Expect = 3e-08
Identities = 79/330 (23%), Positives = 118/330 (35%), Gaps = 92/330 (27%)
Query: 14 YHN----CNS--NSCQDLGNSVLLLLGLIICINISINIVTLLWSRFRGVLYQVFHDTICE 67
+HN CN S D + +LLLLGLI+ +NI IN+ T++W + L ++ D +
Sbjct: 6 WHNTVRCCNQYQESPHDAEDILLLLLGLIVLVNIGINVATMMWHGLQNALDKMI-DWATQ 64
Query: 68 KEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAH----------------- 110
K ++S P K Q VH+ C +DPV + +S P +
Sbjct: 65 KNEIQASESPPSGPPDKAQD---VHIHCILDPVQVKMSRPTQYSSFSCHHFSNHHSSSLL 121
Query: 111 ----RHRRRGSPTRCAHCPVAWAPDTDDEKPHQYPAICSYHWD--------VP----ED- 153
R RRR R C P + PH + + H VP ED
Sbjct: 122 RCVRRRRRRHRRCRRRCCNHQQRPQNYRQIPHSHSVFRNPHRSQKMSQLHRVPFFDQEDP 181
Query: 154 ---------------------WEGFQH------TQGTWVPWSQDAPESPPQTIRFQPTVE 186
W GF G W PP ++ P +
Sbjct: 182 DSYLEEEDNLPFPYPKYPRRGWGGFYQRAGLPSNVGLWGHQGGILASLPPPSLYLSPELR 241
Query: 187 ERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAV-PEAEAAQYQPVPAP---- 241
P + SEL L++Y ++G + + EA Q+ P P
Sbjct: 242 CMPKRVEARSELRLQSY---------------GRHGSQSRLWGNVEAEQWASSPPPPHRL 286
Query: 242 TLGPAVIP-EFSRHRSSGRIVYDARDMRRR 270
P+ +P S + S G ++YD+ D RRR
Sbjct: 287 PPNPSWVPVGHSPYPSVGWMLYDSWDQRRR 316
>gi|24431933 reticulon 4 isoform B [Homo sapiens]
Length = 373
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 172 PESPPQTIRFQPTVEERPLKTGIWSELGLRAYVY-----------PVNPPPPSPEAPSHK 220
P +PP QP+ + P+ + + + L A P PPPP P + S
Sbjct: 95 PAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPASVS-- 152
Query: 221 NGGEGAVPEAEAAQYQPVPAPTLGPAVIPEFSRHRSSGRIVYDA---RDMRR 269
P+AE P PAP P+ R SSG +V D RD+++
Sbjct: 153 -------PQAEPVWTPPAPAPAAPPSTPAAPKRRGSSGSVVVDLLYWRDIKK 197
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 40.0 bits (92), Expect = 0.003
Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 16/203 (7%)
Query: 67 EKEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAHRHRRRGSPTRCAHCPV 126
E + P + + QPP + +PA + V PPPA P P
Sbjct: 609 EVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPA 668
Query: 127 AWAPDTDDEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPE--SPPQTIRFQPT 184
P +E P + ++ + + E VP + + + SPP +
Sbjct: 669 EVQPPPAEEAPAEVQSLPAEETPIEETLAAVHSPPADDVPAEEASVDKHSPPADLLL--- 725
Query: 185 VEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPAPTLG 244
EE P+ +E+ PPPS + P + E E ++ Q +PA LG
Sbjct: 726 TEEFPIGEAS-AEVS----------PPPSEQTPEDEALVENVSTEFQSPQVAGIPAVKLG 774
Query: 245 PAVIPEFSRHRSSGRIVYDARDM 267
V+ ++ +I +D+
Sbjct: 775 SVVLEGEAKFEEVSKINSVLKDL 797
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 40.0 bits (92), Expect = 0.003
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 165 VPWSQDAPESPPQTIRFQPTVEERP-----LKTGIWSELGLRAYVYPVNPPPPSPEAPSH 219
+P D PE + P+V E P + + +WS VNPP P P+ PS
Sbjct: 630 LPAPPDGPEERGEHSPESPSVGEGPQGVTSMPSSMWSGQA------SVNPPLPGPK-PSI 682
Query: 220 KNGGEGAVPEAEAA-QYQPVPAPTLGPAVIPEFSRHRSSGRIVYDARDMRRRLR 272
A+PE+EA Q + P+ T+ P IPE S R DM +R
Sbjct: 683 PEEHRQAIPESEAEDQEREPPSATVSPGQIPESDPADLSPRDTPQGEDMLNAIR 736
>gi|55741571 leucine rich repeat and fibronectin type III domain
containing 2 [Homo sapiens]
Length = 789
Score = 37.0 bits (84), Expect = 0.022
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 12 ASYHNCNSNSCQDLGNSVLLLLGLIICINISINIVTLLWSRFRGVLYQVFHDTICEKEAP 71
A Y C S Q LG +++L++G II + + IV L+ V Y+V + K A
Sbjct: 517 ADYPQCQSMHSQILGGTMILVIGGIIVATLLVFIVILM------VRYKVCNHEAPSKMAA 570
Query: 72 KSSLLRKQT---QPPKKQSSPA 90
S + QT QPP S+PA
Sbjct: 571 AVSNVYSQTNGAQPPPPSSAPA 592
>gi|47519490 reticulon 4 isoform D [Homo sapiens]
Length = 392
Score = 36.2 bits (82), Expect = 0.038
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 172 PESPPQTIRFQPTVEERPLKTGIWSELGLRAYVY-----------PVNPPPPSPEAPSHK 220
P +PP QP+ + P+ + + + L A P PPPP P + S
Sbjct: 95 PAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPASVS-- 152
Query: 221 NGGEGAVPEAEAAQYQPVPAPTLGPAVIPEFSRHRSSGRI 260
P+AE P PAP P+ R SSG +
Sbjct: 153 -------PQAEPVWTPPAPAPAAPPSTPAAPKRRGSSGSV 185
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 36.2 bits (82), Expect = 0.038
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 20/100 (20%)
Query: 172 PESPPQTIRFQPTVEERPLKTGIWSELGLRAYVY-----------PVNPPPPSPEAPSHK 220
P +PP QP+ + P+ + + + L A P PPPP P + S
Sbjct: 95 PAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSKLPEDDEPPARPPPPPPASVS-- 152
Query: 221 NGGEGAVPEAEAAQYQPVPAPTLGPAVIPEFSRHRSSGRI 260
P+AE P PAP P+ R SSG +
Sbjct: 153 -------PQAEPVWTPPAPAPAAPPSTPAAPKRRGSSGSV 185
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 35.8 bits (81), Expect = 0.049
Identities = 51/200 (25%), Positives = 69/200 (34%), Gaps = 40/200 (20%)
Query: 78 KQTQPPKKQSSPAVHLRCTMDPVMMTVSP-----PPAHRHRRRGSPTRCA---HCPVA-- 127
+Q QPP +QS P L+ P + +VSP P + H P A CP A
Sbjct: 357 QQQQPPPQQSRPV--LQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANL 414
Query: 128 --------WAPDTDDEKPHQYPAICSYHWDVPEDWEG-FQHTQGTWVPWSQDAPESPPQT 178
P T D P + VP + FQHT + Q P SPPQ
Sbjct: 415 HKPGGSQQCHPPTPDTGPQN-----GHPEGVPHTPQRRFQHTSAVIL---QLQPASPPQ- 465
Query: 179 IRFQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPV 238
Q ++ W E+ P PSP + G +P + QP
Sbjct: 466 ---QCVPDD-------WKEVAPGEKSVPETRSGPSPHQQAIVTAMPGGLPVPTSPNIQPS 515
Query: 239 PAPTLGPAVIPEFSRHRSSG 258
PA G ++ + S G
Sbjct: 516 PAHETGQGIVHALTDLSSPG 535
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 35.4 bits (80), Expect = 0.065
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 166 PWSQDAPES-PPQTIRFQPTVEERPLKTGIWSELGLRAYVYPVNP-PPPSPEAPSHKNGG 223
P++++ E PP + P RP + Y P + PPP P P GG
Sbjct: 396 PFAENTAERFPPSYTSYLPPEPSRPTD---------QDYRPPASEAPPPEPPEPGGGGGG 446
Query: 224 EGAVPEAEAAQYQPVPA-PTLGPAVIPE-------FSRHRS-SGRIVYDARDMRRRLREL 274
G PE E + P PA P + PE F++H S RI ++ R + L
Sbjct: 447 GGPSPEREEVRTSPRPASPARSGSPAPETTNESVPFAQHSSLDSRIEMLLKEQRSKFSFL 506
Query: 275 TREVE 279
+ E
Sbjct: 507 ASDTE 511
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 35.0 bits (79), Expect = 0.084
Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 28/171 (16%)
Query: 105 SPPPA-----HRHRRRGS--PTRCAHCPVAWAPDT---DDEKPHQYP-----AICSYHWD 149
S PP HR R S P H P + P+ + E PH P A+C H D
Sbjct: 1010 SQPPCAVCIGHRDAPRASSPPRYLQHDPFPFFPEPRAPESEPPHHEPPYIPPAVCIGHRD 1069
Query: 150 VPEDWEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPLKTGIWSELGLRAYVYPVNP 209
P +HTQ P+ D ++ Q + + PL+ +G R +P
Sbjct: 1070 APRASSPPRHTQFDPFPFLPDTSDAEHQC----QSPQHEPLQLPAPVCIGYRDAPRASSP 1125
Query: 210 PPPSPEAPS------HKNGGEGAVPEAEAAQYQP-VPAPT-LGPAVIPEFS 252
P +PE PS + E VP ++ P +P P +G P FS
Sbjct: 1126 PRQAPE-PSLLFQDLPRASTESLVPSMDSLHECPHIPTPVCIGHRDAPSFS 1175
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 174 SPPQTIRFQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAA 233
SPPQ P+ + P G +S+ G A PPPP P P++ G G A
Sbjct: 651 SPPQ-----PSYSQPPYNQGGYSQ-GYTA------PPPPPPPPPAYNYGSYGGY---NPA 695
Query: 234 QYQPVPAPTLGPAVIPEFSRHR 255
Y P P PT P +++++
Sbjct: 696 PYTPPPPPTAQTYPQPSYNQYQ 717
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 174 SPPQTIRFQPTVEERPLKTGIWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAA 233
SPPQ P+ + P G +S+ G A PPPP P P++ G G A
Sbjct: 751 SPPQ-----PSYSQPPYNQGGYSQ-GYTA------PPPPPPPPPAYNYGSYGGY---NPA 795
Query: 234 QYQPVPAPTLGPAVIPEFSRHR 255
Y P P PT P +++++
Sbjct: 796 PYTPPPPPTAQTYPQPSYNQYQ 817
>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
Length = 1009
Score = 34.7 bits (78), Expect = 0.11
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 194 IWSELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPE--------AEAAQYQPVPAPTLGP 245
+WS LG P PP SPE PS G A+P + + VP PTLG
Sbjct: 638 LWS-LGQDDMAIPSKPPAASPEKPSALLGNSLALPRRPQNRDSILNPSDKEEVPTPTLGS 696
Query: 246 AVIP 249
IP
Sbjct: 697 ITIP 700
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 34.3 bits (77), Expect = 0.14
Identities = 45/185 (24%), Positives = 64/185 (34%), Gaps = 26/185 (14%)
Query: 84 KKQSSPAVHLR-CTMD---PVMMTVSPPPAHRHRRRGSP---TRCAHCPVAWAPDT---D 133
++ S+P H CT P++ + PPA SP T AH +A A T
Sbjct: 296 RRSSTPIEHAPVCTSQATTPLLPASAQPPAAASPSAASPPLATAAAHTAIASASTTAPAS 355
Query: 134 DEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPLKTG 193
P SY V HT + + P +P R T RP
Sbjct: 356 SPADSPRPQASSYSPAVAASSAPATHTSYS------EGPAAPAPKPRVVTTASIRP---S 406
Query: 194 IWSELGLRAYV------YPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPAPTLGPAV 247
++ + Y Y P PSP AP++ A + Y P PAP P+
Sbjct: 407 VYQPVPASTYSPSPGANYSPTPYTPSP-APAYTPSPAPAYTPSPVPTYTPSPAPAYTPSP 465
Query: 248 IPEFS 252
P ++
Sbjct: 466 APNYN 470
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 190 LKTGIWSELGLRAYVYPVNPPPPSPEA-------PSHKNGGEGAVPEAEAAQYQPVPAPT 242
L G ++L P PPPP P A P+ G E P A A QP P P+
Sbjct: 18 LPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPS 77
Query: 243 LGPAVIPEFSR 253
+G + S+
Sbjct: 78 VGSSFFSSLSQ 88
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 190 LKTGIWSELGLRAYVYPVNPPPPSPEA-------PSHKNGGEGAVPEAEAAQYQPVPAPT 242
L G ++L P PPPP P A P+ G E P A A QP P P+
Sbjct: 18 LPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPS 77
Query: 243 LGPAVIPEFSR 253
+G + S+
Sbjct: 78 VGSSFFSSLSQ 88
>gi|157388910 TIMELESS interacting protein [Homo sapiens]
Length = 301
Score = 34.3 bits (77), Expect = 0.14
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 205 YPVNPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPAP 241
+P PPP SPE + GEG P+ E+ PVP P
Sbjct: 23 FPPFPPPASPE----RQDGEGTEPDEESGNGAPVPVP 55
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 179 IRFQPTVEERPLKTGIWSELGLRAYVYPV-NPPPPSPEAPSHKNGGEGAVPEAEAAQYQP 237
+R Q +E P+ + YV V +PP P PE P G E A PE + P
Sbjct: 914 LRLQVVLEHMPVGPD-----AILRYVRRVGDPPQPLPEEPMEVQGAERASPEPQRENASP 968
Query: 238 VPAPTL------GPAVIPE 250
P T GP PE
Sbjct: 969 APGTTAEEAMSRGPPPAPE 987
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 179 IRFQPTVEERPLKTGIWSELGLRAYVYPV-NPPPPSPEAPSHKNGGEGAVPEAEAAQYQP 237
+R Q +E P+ + YV V +PP P PE P G E A PE + P
Sbjct: 914 LRLQVVLEHMPVGPD-----AILRYVRRVGDPPQPLPEEPMEVQGAERASPEPQRENASP 968
Query: 238 VPAPTL------GPAVIPE 250
P T GP PE
Sbjct: 969 APGTTAEEAMSRGPPPAPE 987
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 179 IRFQPTVEERPLKTGIWSELGLRAYVYPV-NPPPPSPEAPSHKNGGEGAVPEAEAAQYQP 237
+R Q +E P+ + YV V +PP P PE P G E A PE + P
Sbjct: 914 LRLQVVLEHMPVGPD-----AILRYVRRVGDPPQPLPEEPMEVQGAERASPEPQRENASP 968
Query: 238 VPAPTL------GPAVIPE 250
P T GP PE
Sbjct: 969 APGTTAEEAMSRGPPPAPE 987
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 179 IRFQPTVEERPLKTGIWSELGLRAYVYPV-NPPPPSPEAPSHKNGGEGAVPEAEAAQYQP 237
+R Q +E P+ + YV V +PP P PE P G E A PE + P
Sbjct: 920 LRLQVVLEHMPVGPD-----AILRYVRRVGDPPQPLPEEPMEVQGAERASPEPQRENASP 974
Query: 238 VPAPTL------GPAVIPE 250
P T GP PE
Sbjct: 975 APGTTAEEAMSRGPPPAPE 993
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 33.9 bits (76), Expect = 0.19
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 176 PQTIRFQPTVEERPLKTGIWSELGLRAYVYPVNPPP---PSPEAPSHKNGGEGAVPEAEA 232
PQ QP E P L + A V PPP P+P P K G G P+A
Sbjct: 701 PQERSQQPLSAEGP-------HLSVPASVIVSAPPPAQDPAPATPVAKGAGLG--PQAPD 751
Query: 233 AQYQPVPAPTLGPAVIP 249
+Q P PAP + PA P
Sbjct: 752 SQASPAPAPQI-PAAAP 767
>gi|39930523 hypothetical protein LOC144097 [Homo sapiens]
Length = 381
Score = 33.9 bits (76), Expect = 0.19
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 16/190 (8%)
Query: 60 VFHDTICEKEAPKSSLLRKQTQPPKKQSSPAVHLRCTMDPVMMTVSPPPAHRHRRRGSPT 119
+ D E+ +P +S + P + A + + V++ P+ R R
Sbjct: 138 LLQDVRAEQPSPPNSDSGQDAHPDPDANPDAARMPAEI-VVLLDSEDNPSLPKRSRPRGL 196
Query: 120 RCAHCPVAWAPDTDDEKPHQYPAICSYHWDVPEDWEGFQHTQGTWVPWSQDAPESPPQ-- 177
R P A + ++KP W P E + +G + + D PP
Sbjct: 197 RPLELPAVPATEPGNKKPR------GQRWKEPPGEEPVRKKRGRPMTKNLDPDPEPPSPD 250
Query: 178 --TIRFQPTVEERPLKTGIW-SELGLRAYVYPVNPPPPSPEAPSHKNGGEGAVPEAEAAQ 234
T F E R G + + L+ + + P S ++P + EG +P AE+
Sbjct: 251 SPTETFAAPAEVRHFTDGSFPAGFVLQLFSHTQLRGPDSKDSPKDREVAEGGLPRAES-- 308
Query: 235 YQPVPAPTLG 244
P PAP G
Sbjct: 309 --PSPAPPPG 316
>gi|56606125 hypothetical protein LOC201725 [Homo sapiens]
Length = 113
Score = 33.9 bits (76), Expect = 0.19
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 208 NPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPAPTLGPAV 247
+PPPP P +PS + + P + PVP+ + GP V
Sbjct: 11 SPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTV 50
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 154 WEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPL--------KTGIWSELGLRAYVY 205
W+G Q + WVP +P S P P +E + +W +G + ++
Sbjct: 405 WKGMQSRENIWVPADPVSPPSLPSV----PLLESLVMGPQGVLSESKALWETMGQKENLW 460
Query: 206 ------PVNPPPPSPEAPSHK-NGGEG-AVPEA----------EAAQYQPVPAPTLGPAV 247
PV+ PP+ H+ N GE A EA +A P A + PA+
Sbjct: 461 ASDSPDPVHSTPPTTLMEPHRINPGECLATSEATWKDTEHSRNSSASRSPSLALSPPPAL 520
Query: 248 IPEFSRHRSSG 258
PE R RS G
Sbjct: 521 APELLRVRSMG 531
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 154 WEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPL--------KTGIWSELGLRAYVY 205
W+G Q + WVP +P S P P +E + +W +G + ++
Sbjct: 380 WKGMQSRENIWVPADPVSPPSLPSV----PLLESLVMGPQGVLSESKALWETMGQKENLW 435
Query: 206 ------PVNPPPPSPEAPSHK-NGGEG-AVPEA----------EAAQYQPVPAPTLGPAV 247
PV+ PP+ H+ N GE A EA +A P A + PA+
Sbjct: 436 ASDSPDPVHSTPPTTLMEPHRINPGECLATSEATWKDTEHSRNSSASRSPSLALSPPPAL 495
Query: 248 IPEFSRHRSSG 258
PE R RS G
Sbjct: 496 APELLRVRSMG 506
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 154 WEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPL--------KTGIWSELGLRAYVY 205
W+G Q + WVP +P S P P +E + +W +G + ++
Sbjct: 418 WKGMQSRENIWVPADPVSPPSLPSV----PLLESLVMGPQGVLSESKALWETMGQKENLW 473
Query: 206 ------PVNPPPPSPEAPSHK-NGGEG-AVPEA----------EAAQYQPVPAPTLGPAV 247
PV+ PP+ H+ N GE A EA +A P A + PA+
Sbjct: 474 ASDSPDPVHSTPPTTLMEPHRINPGECLATSEATWKDTEHSRNSSASRSPSLALSPPPAL 533
Query: 248 IPEFSRHRSSG 258
PE R RS G
Sbjct: 534 APELLRVRSMG 544
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 30/131 (22%)
Query: 154 WEGFQHTQGTWVPWSQDAPESPPQTIRFQPTVEERPL--------KTGIWSELGLRAYVY 205
W+G Q + WVP +P S P P +E + +W +G + ++
Sbjct: 453 WKGMQSRENIWVPADPVSPPSLPSV----PLLESLVMGPQGVLSESKALWETMGQKENLW 508
Query: 206 ------PVNPPPPSPEAPSHK-NGGEG-AVPEA----------EAAQYQPVPAPTLGPAV 247
PV+ PP+ H+ N GE A EA +A P A + PA+
Sbjct: 509 ASDSPDPVHSTPPTTLMEPHRINPGECLATSEATWKDTEHSRNSSASRSPSLALSPPPAL 568
Query: 248 IPEFSRHRSSG 258
PE R RS G
Sbjct: 569 APELLRVRSMG 579
>gi|4503657 forkhead box H1 [Homo sapiens]
Length = 365
Score = 33.5 bits (75), Expect = 0.25
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 167 WSQDAPESPPQTIRFQPTVEERPLKTG-----IWSELG---LRAYVY-PVNPPPPSPEAP 217
W+ D P + +R Q T R + G +LG L Y P +PPPP E
Sbjct: 108 WAVDVSLIPAEALRLQNTALCRRWQNGGARGAFAKDLGPYVLHGRPYRPPSPPPPPSEGF 167
Query: 218 SHKN----GGEGAVPEAEAAQYQPVPAPT 242
S K+ GEGA A Q PVPA T
Sbjct: 168 SIKSLLGGSGEGAPWPGLAPQSSPVPAGT 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,976,524
Number of Sequences: 37866
Number of extensions: 935506
Number of successful extensions: 6084
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 5750
Number of HSP's gapped (non-prelim): 439
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.