Guide to the Human Genome
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Name: LOC100289585 Sequence: fasta or formatted (65aa) NCBI GI: 239741630
Description:

PREDICTED: hypothetical protein XP_002342267

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6          3           1
 C cysteine            3.1          2           1
 D aspartate           3.1          2           1
 E glutamate           4.6          3           1
 F phenylalanine       4.6          3           1
 G glycine             4.6          3           1
 H histidine           6.2          4           1
 I isoleucine          9.2          6           2
 K lysine             10.8          7           4
 L leucine             4.6          3           1
 M methionine          3.1          2           1
 N asparagine          6.2          4           1
 P proline             6.2          4           2
 Q glutamine           7.7          5           2
 R arginine            4.6          3           1
 S serine              9.2          6           2
 T threonine           3.1          2           1
 V valine              3.1          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342267 
LOC100291513          1.000   PREDICTED: hypothetical protein XP_002348243 
LOC100293698          0.982   PREDICTED: similar to proliferation-inducing protei...
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.115   PREDICTED: ankyrin repeat domain 31 
LOC642337             0.035   PREDICTED: similar to hCG1648021 
LOC642337             0.035   PREDICTED: similar to hCG1648021 
LOC642337             0.035   PREDICTED: similar to hCG1648021 
MIA3                  0.009   melanoma inhibitory activity family, member 3 [Homo...
RUNDC2B               0.009   RUN domain containing 2B 
LOC100291983          0.009   PREDICTED: hypothetical protein XP_002345128 
LOC100289105          0.009   PREDICTED: hypothetical protein 
LOC100289105          0.009   PREDICTED: hypothetical protein XP_002343633 
DFNB31                0.009   CASK-interacting protein CIP98 isoform 2 
DFNB31                0.009   CASK-interacting protein CIP98 isoform 1 
RASGEF1A              0.009   RasGEF domain family, member 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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