Search of human proteins with 239740792

Search of human proteins with 239740792

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740792 PREDICTED: similar to serine/threonine kinase 19
[Homo sapiens]
         (71 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740792 PREDICTED: similar to serine/threonine kinase 19 [H...   142   7e-35
gi|14602431 serine/threonine kinase 19 isoform 2 [Homo sapiens]       133   3e-32
gi|4759180 serine/threonine kinase 19 isoform 1 [Homo sapiens]        133   3e-32

>gi|239740792 PREDICTED: similar to serine/threonine kinase 19
          [Homo sapiens]
          Length = 71

 Score =  142 bits (357), Expect = 7e-35
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MHKYFVKGRQAVLGMVRKAKYRELLLSELLGRRVPVVVRLGLTYHVHDLIGAQLVDCIST 60
          MHKYFVKGRQAVLGMVRKAKYRELLLSELLGRRVPVVVRLGLTYHVHDLIGAQLVDCIST
Sbjct: 1  MHKYFVKGRQAVLGMVRKAKYRELLLSELLGRRVPVVVRLGLTYHVHDLIGAQLVDCIST 60

Query: 61 TSGTLLRLPET 71
          TSGTLLRLPET
Sbjct: 61 TSGTLLRLPET 71


>gi|14602431 serine/threonine kinase 19 isoform 2 [Homo sapiens]
          Length = 368

 Score =  133 bits (334), Expect = 3e-32
 Identities = 67/69 (97%), Positives = 67/69 (97%)

Query: 3   KYFVKGRQAVLGMVRKAKYRELLLSELLGRRVPVVVRLGLTYHVHDLIGAQLVDCISTTS 62
           KYFVKGRQAVL MVRKAKYRELLLSELLGRR PVVVRLGLTYHVHDLIGAQLVDCISTTS
Sbjct: 300 KYFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTS 359

Query: 63  GTLLRLPET 71
           GTLLRLPET
Sbjct: 360 GTLLRLPET 368


>gi|4759180 serine/threonine kinase 19 isoform 1 [Homo sapiens]
          Length = 364

 Score =  133 bits (334), Expect = 3e-32
 Identities = 67/69 (97%), Positives = 67/69 (97%)

Query: 3   KYFVKGRQAVLGMVRKAKYRELLLSELLGRRVPVVVRLGLTYHVHDLIGAQLVDCISTTS 62
           KYFVKGRQAVL MVRKAKYRELLLSELLGRR PVVVRLGLTYHVHDLIGAQLVDCISTTS
Sbjct: 296 KYFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVRLGLTYHVHDLIGAQLVDCISTTS 355

Query: 63  GTLLRLPET 71
           GTLLRLPET
Sbjct: 356 GTLLRLPET 364


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,278,746
Number of Sequences: 37866
Number of extensions: 67384
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 18,247,518
effective HSP length: 44
effective length of query: 27
effective length of database: 16,581,414
effective search space: 447698178
effective search space used: 447698178
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.