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Search of human proteins with 239508826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
(222 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743164 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|239508826 PREDICTED: hypothetical protein [Homo sapiens] 471 e-133
gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo ... 192 1e-49
gi|239508694 PREDICTED: hypothetical protein [Homo sapiens] 191 3e-49
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ... 191 6e-49
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ... 191 6e-49
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ... 187 5e-48
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens] 60 2e-09
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 35 0.039
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 35 0.051
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 35 0.067
gi|57864582 hornerin [Homo sapiens] 34 0.087
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 34 0.11
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 34 0.11
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 34 0.11
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 34 0.11
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 34 0.11
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 34 0.11
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 33 0.25
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 32 0.43
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 32 0.43
gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [H... 32 0.56
gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [H... 32 0.56
gi|5032105 small optic lobes [Homo sapiens] 32 0.56
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 31 0.74
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 31 0.74
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 0.96
>gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 471 bits (1211), Expect = e-133
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG 60
MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG
Sbjct: 1 MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG 60
Query: 61 PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA 120
PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA
Sbjct: 61 PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA 120
Query: 121 ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR 180
ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR
Sbjct: 121 ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR 180
Query: 181 EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP 222
EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP
Sbjct: 181 EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP 222
>gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 471 bits (1211), Expect = e-133
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG 60
MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG
Sbjct: 1 MNPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG 60
Query: 61 PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA 120
PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA
Sbjct: 61 PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAA 120
Query: 121 ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR 180
ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR
Sbjct: 121 ERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCR 180
Query: 181 EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP 222
EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP
Sbjct: 181 EEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP 222
>gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo
sapiens]
Length = 149
Score = 192 bits (489), Expect = 1e-49
Identities = 98/131 (74%), Positives = 108/131 (82%), Gaps = 3/131 (2%)
Query: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRVRCEAE GPVQAF RQEA
Sbjct: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFERQEA 65
Query: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
GP +ADWRSSS EAA++QK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 66 GPAKADWRSSSAPEEAAKTQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
Query: 119 AAERPELGLGR 129
A ER ELG GR
Sbjct: 126 AVERTELGPGR 136
Score = 45.1 bits (105), Expect = 5e-05
Identities = 39/104 (37%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYRGR--REAGAVPGQAYLTTV 173
R ELGL R + W CR R+AGA+ G++ WA+R R EA A P QA+
Sbjct: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFE--- 61
Query: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
R+E + S+ P AK Q G RPPR MS A
Sbjct: 62 ------RQEAGPAKADWRSSSAPEEAAKTQKRGLGRPPRAMSWA 99
>gi|239508694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 191 bits (486), Expect = 3e-49
Identities = 98/131 (74%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRVRCEAE GPVQAF QEA
Sbjct: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFETQEA 65
Query: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
GP +ADWRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 66 GPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
Query: 119 AAERPELGLGR 129
A ER ELG GR
Sbjct: 126 AVERTELGPGR 136
Score = 45.4 bits (106), Expect = 4e-05
Identities = 39/104 (37%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYRGR--REAGAVPGQAYLTTV 173
R ELGL R + W CR R+AGA+ G++ WA+R R EA A P QA+ T
Sbjct: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAFET-- 62
Query: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
+E + S+ P AK Q G RPPR MS A
Sbjct: 63 -------QEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWA 99
>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
sapiens]
Length = 149
Score = 191 bits (484), Expect = 6e-49
Identities = 98/131 (74%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRV CEAE GPVQAF RQEA
Sbjct: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEA 65
Query: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
GP +ADWRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 66 GPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
Query: 119 AAERPELGLGR 129
A ER ELG GR
Sbjct: 126 AVERTELGPGR 136
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYR--GRREAGAVPGQAYLTTV 173
R ELGL R + W CR R+AGA+ G++ WA+R EA A P QA+
Sbjct: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFE--- 61
Query: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
R+E + S+ P AK Q G RPPR MS A
Sbjct: 62 ------RQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWA 99
>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
Length = 149
Score = 191 bits (484), Expect = 6e-49
Identities = 98/131 (74%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRV CEAE GPVQAF RQEA
Sbjct: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEA 65
Query: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
GP +ADWRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 66 GPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
Query: 119 AAERPELGLGR 129
A ER ELG GR
Sbjct: 126 AVERTELGPGR 136
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYR--GRREAGAVPGQAYLTTV 173
R ELGL R + W CR R+AGA+ G++ WA+R EA A P QA+
Sbjct: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFE--- 61
Query: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
R+E + S+ P AK Q G RPPR MS A
Sbjct: 62 ------RQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWA 99
>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
sapiens]
Length = 149
Score = 187 bits (476), Expect = 5e-48
Identities = 97/131 (74%), Positives = 106/131 (80%), Gaps = 3/131 (2%)
Query: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
N +G KRPLAG SW CRSG++ GALD G SEARASWAWRVRCEAE GPVQAF RQEA
Sbjct: 6 NELGLKRPLAGRSWTCRSGRKPGALDWGDRSEARASWAWRVRCEAEAEAGPVQAFERQEA 65
Query: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
GP +A WRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 66 GPAKAAWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
Query: 119 AAERPELGLGR 129
AAER ELG GR
Sbjct: 126 AAERTELGPGR 136
>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 59.7 bits (143), Expect = 2e-09
Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 130 MIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYL-TTVWSCRGCREEELGLER 188
M WACRG REAGA PG+A T+WA RGR+EA A P A+ VW GL+
Sbjct: 1 MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVW----------GLQM 50
Query: 189 PTGGSAGPG 197
P+ G + PG
Sbjct: 51 PSEGRSWPG 59
Score = 58.9 bits (141), Expect = 3e-09
Identities = 59/198 (29%), Positives = 71/198 (35%), Gaps = 74/198 (37%)
Query: 14 SWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESA 73
+WACR +EAGA G ++ R WA R R EA+ GP +
Sbjct: 2 TWACRGRREAGA--GPGEADFRTIWACRGRQEAQAGP-----------------RGAHQP 42
Query: 74 EAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMI-W 132
EA WGL P G +W PGEA RPELGLG +
Sbjct: 43 EAV----WGLQMPSEGRSW-----------------------PGEATVRPELGLGSLASG 75
Query: 133 ACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGG 192
+C R AG+ WA ++ P E GLE GG
Sbjct: 76 SCGPTRAAGS----------WAGAESKDVVGRP-----------------ESGLETQPGG 108
Query: 193 SAGPGAHAKEQTPGRERP 210
AGPG A G ERP
Sbjct: 109 RAGPGEDAGRLQVGLERP 126
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 35.4 bits (80), Expect = 0.039
Identities = 43/165 (26%), Positives = 58/165 (35%), Gaps = 23/165 (13%)
Query: 67 RSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELG 126
+ S + A E+ W +PPG + A P T R L Q + ++E
Sbjct: 197 KPGSPTQRAREASSW---KPPGHSHTAPPGRGTQRP-------LTQRHSSESSSELSSSA 246
Query: 127 LGRMIWACR---GHREAGAVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEE 183
IW G R P +T W ++ A G + CR E
Sbjct: 247 WPGTIWTSTLSPGQRLPTPPPPDPAALTSWGLPQQQGACVPEG---IALALRCRAMGPWE 303
Query: 184 LGLERPTGGSAGPGAHAKEQ-TPGRERPPRR------MSLASRGP 221
T GS GPG H + + TP R PRR + SRGP
Sbjct: 304 EQNWSATSGSPGPGPHPRSRPTPPRLPYPRRAAGTVGIGRPSRGP 348
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 35.0 bits (79), Expect = 0.051
Identities = 58/219 (26%), Positives = 73/219 (33%), Gaps = 42/219 (19%)
Query: 21 QEAGALDSGGCSEARASWAWRVRCEAETGPV--QAFG---RQEAGPGEADWRSSSESA-- 73
+E A + G A + W W E + G V +A G E G EAD + E
Sbjct: 183 EEVRAREPGMARGAESEWTWHGETEGKAGAVGPKAAGDNREMEQGVREADAGETEEPGAE 242
Query: 74 ------------EAAESQK----WGLGRPPGGMNWAGPKEA---TGRQEDLGL--EILIQ 112
+A ES + WG G P G +EA GR+E + +
Sbjct: 243 GAGKGEEVVVVEKACESTRAWGTWGPGAEPEDWGILGREEARTTPGREEARAILDGEEAR 302
Query: 113 TFAPGEAAERPELGL-------GRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVP 165
T + GE AE G G G EAG G G EAG
Sbjct: 303 TISGGEEAETASGGEEAETASGGEEAGTASGGEEAGIASGG----EAGTASGGEEAGTAS 358
Query: 166 GQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQT 204
G W+ G E +L R T A PG E T
Sbjct: 359 GG---DEAWTTSGKEEADLLGVRQTEYGAVPGERLLEAT 394
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 34.7 bits (78), Expect = 0.067
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 21 QEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESAEAAESQK 80
+EAG +GG S W + + +GP F PG A W +++ E
Sbjct: 179 KEAGPGGAGGRSSTGLHWQHYLLVDLVSGPWVLFLSPTCPPGPA-W--GADTRIPFEKLM 235
Query: 81 WGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREA 140
+ P A E + L L++T + E L R+ WA ++E
Sbjct: 236 EAVAHSPENRECAPYGEQASLASVIMLSCLMKTVLLAKLNECSSLDSERIEWAI--NQEG 293
Query: 141 GAVPGQAYLMTV---WAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTG 191
++PG+ +T W RG R+ PG+ YL V R ++G P G
Sbjct: 294 ASLPGEPANITELRNWLTRGLRDF-FFPGEPYLHYV------RASQVGSRSPPG 340
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 34.3 bits (77), Expect = 0.087
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 18 RSGQEAGALDSGGCSEARASWAW-RVRCEAETGPVQAFGRQEAGPGEADWRSSSESAEAA 76
R G +G S G + +S+++ R E+ +G FG+ E+G G++ S S
Sbjct: 311 RHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGYSKHGSGSGH 370
Query: 77 ESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRM---IWA 133
S + G G + +G ++ RQ ++ E+A R G G+
Sbjct: 371 SSSQGQHGSTSGQASSSGQHGSSSRQS--------SSYGQHESASRHSSGRGQHSSGSGQ 422
Query: 134 CRGHREAGAVPGQA 147
GH + G+ GQ+
Sbjct: 423 SPGHGQRGSGSGQS 436
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 33.9 bits (76), Expect = 0.11
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 21 QEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESAEAAESQK 80
+EAG +GG S W + + +GP F PG A W +++ E
Sbjct: 179 KEAGPGGAGGRSSTGLHWQHYLLVDLVSGPWVLFLSPTCPPGPA-W--GADTRIPFEKLM 235
Query: 81 WGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREA 140
+ P A E + L L++T + E L R+ WA ++E
Sbjct: 236 EAVAHSPENRECAPYGEQASLASVIMLSCLMKTVLLAKLNECSSLDSERIEWAI--NQEG 293
Query: 141 GAVPGQAYLMTV---WAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTG 191
++PG+ +T W RG R+ PG+ Y+ V R ++G P G
Sbjct: 294 ASLPGEPANITELRNWLTRGLRDF-FFPGEPYMHYV------RASQVGSRSPPG 340
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 33.9 bits (76), Expect = 0.11
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 15/174 (8%)
Query: 21 QEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESAEAAESQK 80
+EAG +GG S W + + +GP F PG A W +++ E
Sbjct: 179 KEAGPGGAGGRSSTGLHWQHYLLVDLVSGPWVLFLSPTCPPGPA-W--GADTRIPFEKLM 235
Query: 81 WGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREA 140
+ P A E + L L++T + E L R+ WA ++E
Sbjct: 236 EAVAHSPENRECAPYGEQASLASVIMLSCLMKTVLLAKLNECSSLDSERIEWAI--NQEG 293
Query: 141 GAVPGQAYLMTV---WAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTG 191
++PG+ +T W RG R+ PG+ Y+ V R ++G P G
Sbjct: 294 ASLPGEPANITELRNWLTRGLRDF-FFPGEPYMHYV------RASQVGSRSPPG 340
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 33.9 bits (76), Expect = 0.11
Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 82 GLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAG 141
G+ PPG + G G + D G + + PG A E+ E GL R RG+ A
Sbjct: 1134 GIRGPPGLPGFPGSPGPMGIRGDQGRDGI-----PGPAGEKGETGLLRAPPGPRGNPGAQ 1188
Query: 142 AVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAK 201
G RG +PG+ RG G+E G PGA
Sbjct: 1189 GAKGD---------RGAPGFPGLPGRKGAMGDAGPRG----PTGIEGFPGPPGLPGAIIP 1235
Query: 202 EQTPGRERPPRRMSLASRGPP 222
QT R P R S + GPP
Sbjct: 1236 GQTGNRGPPGSRGSPGAPGPP 1256
Score = 29.3 bits (64), Expect = 2.8
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 23/142 (16%)
Query: 86 PPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLG--RMIWACRGHREAGAV 143
PPG + AGP+ A G GL PG+ +LG + + G R +
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGL--------PGKPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
Query: 144 PGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQ 203
PG RG + +PG A G + E L P G PGA +
Sbjct: 1142 PGFPGSPGPMGIRGDQGRDGIPGPA---------GEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 204 TPGRE----RPPRRMSLASRGP 221
G P R+ ++ GP
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 33.9 bits (76), Expect = 0.11
Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 82 GLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAG 141
G+ PPG + G G + D G + + PG A E+ E GL R RG+ A
Sbjct: 1134 GIRGPPGLPGFPGSPGPMGIRGDQGRDGI-----PGPAGEKGETGLLRAPPGPRGNPGAQ 1188
Query: 142 AVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAK 201
G RG +PG+ RG G+E G PGA
Sbjct: 1189 GAKGD---------RGAPGFPGLPGRKGAMGDAGPRG----PTGIEGFPGPPGLPGAIIP 1235
Query: 202 EQTPGRERPPRRMSLASRGPP 222
QT R P R S + GPP
Sbjct: 1236 GQTGNRGPPGSRGSPGAPGPP 1256
Score = 29.3 bits (64), Expect = 2.8
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 23/142 (16%)
Query: 86 PPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLG--RMIWACRGHREAGAV 143
PPG + AGP+ A G GL PG+ +LG + + G R +
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGL--------PGKPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
Query: 144 PGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQ 203
PG RG + +PG A G + E L P G PGA +
Sbjct: 1142 PGFPGSPGPMGIRGDQGRDGIPGPA---------GEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 204 TPGRE----RPPRRMSLASRGP 221
G P R+ ++ GP
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 33.9 bits (76), Expect = 0.11
Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 82 GLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAG 141
G+ PPG + G G + D G + + PG A E+ E GL R RG+ A
Sbjct: 1134 GIRGPPGLPGFPGSPGPMGIRGDQGRDGI-----PGPAGEKGETGLLRAPPGPRGNPGAQ 1188
Query: 142 AVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAK 201
G RG +PG+ RG G+E G PGA
Sbjct: 1189 GAKGD---------RGAPGFPGLPGRKGAMGDAGPRG----PTGIEGFPGPPGLPGAIIP 1235
Query: 202 EQTPGRERPPRRMSLASRGPP 222
QT R P R S + GPP
Sbjct: 1236 GQTGNRGPPGSRGSPGAPGPP 1256
Score = 29.3 bits (64), Expect = 2.8
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 23/142 (16%)
Query: 86 PPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLG--RMIWACRGHREAGAV 143
PPG + AGP+ A G GL PG+ +LG + + G R +
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGL--------PGKPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
Query: 144 PGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQ 203
PG RG + +PG A G + E L P G PGA +
Sbjct: 1142 PGFPGSPGPMGIRGDQGRDGIPGPA---------GEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 204 TPGRE----RPPRRMSLASRGP 221
G P R+ ++ GP
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 33.9 bits (76), Expect = 0.11
Identities = 41/141 (29%), Positives = 52/141 (36%), Gaps = 18/141 (12%)
Query: 82 GLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAG 141
G+ PPG + G G + D G + + PG A E+ E GL R RG+ A
Sbjct: 1134 GIRGPPGLPGFPGSPGPMGIRGDQGRDGI-----PGPAGEKGETGLLRAPPGPRGNPGAQ 1188
Query: 142 AVPGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAK 201
G RG +PG+ RG G+E G PGA
Sbjct: 1189 GAKGD---------RGAPGFPGLPGRKGAMGDAGPRG----PTGIEGFPGPPGLPGAIIP 1235
Query: 202 EQTPGRERPPRRMSLASRGPP 222
QT R P R S + GPP
Sbjct: 1236 GQTGNRGPPGSRGSPGAPGPP 1256
Score = 29.3 bits (64), Expect = 2.8
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 23/142 (16%)
Query: 86 PPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLG--RMIWACRGHREAGAV 143
PPG + AGP+ A G GL PG+ +LG + + G R +
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGL--------PGKPGPHGDLGFKGIKGLLGPPGIRGPPGL 1141
Query: 144 PGQAYLMTVWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQ 203
PG RG + +PG A G + E L P G PGA +
Sbjct: 1142 PGFPGSPGPMGIRGDQGRDGIPGPA---------GEKGETGLLRAPPGPRGNPGAQGAKG 1192
Query: 204 TPGRE----RPPRRMSLASRGP 221
G P R+ ++ GP
Sbjct: 1193 DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 32.7 bits (73), Expect = 0.25
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 5 GQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAG---- 60
G + +GGSWA Q G L + G + SW +A G G
Sbjct: 1306 GAENQASGGSWALAGNQAIGELWAAG-QASDGSWPGGQASGVSWVGEEAIGGSWTGAENQ 1364
Query: 61 PGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATG 100
E W + ++ S G+ GG +WAG + +G
Sbjct: 1365 ASEGSWAGAGAGNMSSVSYWAGVVDQAGGGSWAGTSDQSG 1404
Score = 31.6 bits (70), Expect = 0.56
Identities = 50/204 (24%), Positives = 76/204 (37%), Gaps = 39/204 (19%)
Query: 12 GGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSE 71
GGSW SGQ+ G G +++ A G + G Q +G + W +
Sbjct: 1612 GGSWGGASGQDVGGSRPGPTNQSSA------------GSWDSPGSQVSG---SCWTGAGA 1656
Query: 72 SAEAAESQKWGL-GRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRM 130
+A K G + GG W G + TG G +E G+G
Sbjct: 1657 VDQAGGCSKPGFEDQAIGGGFWPGAGDQTGGGSRPG-------------SEDQSSGIGS- 1702
Query: 131 IWACRGHRE-AGAVPGQAYLMT--VWAYRGRREAGAVPGQAYLTTVWSCRGCREEELGLE 187
W G + GA PG A + WA G + + G++++ C + E +
Sbjct: 1703 -WGVAGGQVLGGARPGPADQSSGGSWAGTGNQSS----GRSWIGPGDQAVDCSKPEFEDQ 1757
Query: 188 RPTGGS-AGPGAHAKEQTPGRERP 210
GGS AG G+ A ++ RP
Sbjct: 1758 ACGGGSWAGAGSQASGESWAGSRP 1781
Score = 31.2 bits (69), Expect = 0.74
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 14 SWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSSESA 73
SWA + + SG +A +W V C+ + A R E G W + +
Sbjct: 1220 SWADDENEASIGSWSGASDKAGIIRSWAVACDETSVKSWAGARAENVVGIGTW---ARAG 1276
Query: 74 EAAESQKWGLGRPPGGMNWAGPKEATG 100
E A W G+ G WAG K + G
Sbjct: 1277 EQASGGLWAGGQTSEG-TWAGDKASGG 1302
Score = 27.7 bits (60), Expect = 8.2
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 12 GGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGP-GEADWRSSS 70
GGSWA S Q G +A +W A G QA G GP ++ RS +
Sbjct: 1393 GGSWAGTSDQSGGGSKPRFEDQASGEGSW-----AGAGG-QASGGSMLGPEDQSSGRSWA 1446
Query: 71 ESA-EAAESQKWGLGRPPGGMNWAGPKEATG 100
++A +A+ + G G WAG + +G
Sbjct: 1447 DTADQASGGSRLGHVDQSSGGAWAGTLDQSG 1477
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.33
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 5 GQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEA 64
G + P GG +G G L SGG S R + A R P+ A GPG
Sbjct: 22 GDEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGARR------PIGA--APSVGPG-- 71
Query: 65 DWRSSSESAEAAESQKWGLG---RPPGGMNWAGPKE 97
E Q WG RPPG WAG ++
Sbjct: 72 -----------GELQGWGRKSGCRPPGPEGWAGGRK 96
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.3 bits (72), Expect = 0.33
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 5 GQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEA 64
G + P GG +G G L SGG S R + A R P+ A GPG
Sbjct: 22 GDEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGARR------PIGA--APSVGPG-- 71
Query: 65 DWRSSSESAEAAESQKWGLG---RPPGGMNWAGPKE 97
E Q WG RPPG WAG ++
Sbjct: 72 -----------GELQGWGRKSGCRPPGPEGWAGGRK 96
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.33
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 5 GQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEA 64
G + P GG +G G L SGG S R + A R P+ A GPG
Sbjct: 22 GDEAPGPGGGEGAAAGGGGGGLGSGGRSAQRRAGAGARR------PIGA--APSVGPG-- 71
Query: 65 DWRSSSESAEAAESQKWGLG---RPPGGMNWAGPKE 97
E Q WG RPPG WAG ++
Sbjct: 72 -----------GELQGWGRKSGCRPPGPEGWAGGRK 96
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 32.0 bits (71), Expect = 0.43
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 11 AGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSS 70
A + A +G EAG +GG E P G E GPG R+
Sbjct: 11 AAAAAAAATGTEAGPGTAGGSENGS---------EVAAQPAGLSGPAEVGPGAVGERTPR 61
Query: 71 ESAEAAESQKWGLGRPPGGMNWAGPK 96
+ S GL PPG AGP+
Sbjct: 62 KKEPPRASPPGGLAEPPGS---AGPQ 84
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 32.0 bits (71), Expect = 0.43
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 12/86 (13%)
Query: 11 AGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGPGEADWRSSS 70
A + A +G EAG +GG E P G E GPG R+
Sbjct: 11 AAAAAAAATGTEAGPGTAGGSENGS---------EVAAQPAGLSGPAEVGPGAVGERTPR 61
Query: 71 ESAEAAESQKWGLGRPPGGMNWAGPK 96
+ S GL PPG AGP+
Sbjct: 62 KKEPPRASPPGGLAEPPGS---AGPQ 84
>gi|61742136 F-box and leucine-rich repeat protein 6 isoform 2 [Homo
sapiens]
Length = 533
Score = 31.6 bits (70), Expect = 0.56
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 94 GPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAGAVPGQAYLMTVW 153
GP G + + LEIL+Q F AA+ P LGR CR +EA + P + +T+
Sbjct: 106 GPDAGWG--DRIPLEILVQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLS 163
Query: 154 A-YRGRREAGAVPGQAYL 170
+ GR G V + L
Sbjct: 164 SPLVGRPAKGGVKAEKKL 181
>gi|16306576 F-box and leucine-rich repeat protein 6 isoform 1 [Homo
sapiens]
Length = 539
Score = 31.6 bits (70), Expect = 0.56
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 94 GPKEATGRQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAGAVPGQAYLMTVW 153
GP G + + LEIL+Q F AA+ P LGR CR +EA + P + +T+
Sbjct: 106 GPDAGWG--DRIPLEILVQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLS 163
Query: 154 A-YRGRREAGAVPGQAYL 170
+ GR G V + L
Sbjct: 164 SPLVGRPAKGGVKAEKKL 181
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 31.6 bits (70), Expect = 0.56
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 44 CEAETGPVQAFGRQEAGPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPK 96
C+ E GPV+ G P E + + ++ G P GG WA P+
Sbjct: 101 CQEEAGPVRTAGLVATEPARGQCEDKDEEEKEEQEEEEGAAEPRGG--WACPR 151
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 31.2 bits (69), Expect = 0.74
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 4 MGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGP-- 61
+G++ P AG +AG++ G R W W P++ AGP
Sbjct: 39 VGRRVPDAGSECVGHRAPDAGSVCGGAGPPMRGQWGW-----GAGSPMRGQSVWGAGPPM 93
Query: 62 -GEADWRSSSESAEAAESQKWGLGRP-PGGMNW-AGPKEATGRQEDLGLEILIQTFAPG 117
G+ W + S WG G P G + W AGP G L Q PG
Sbjct: 94 RGQWGWGAGS---PMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPG 149
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 31.2 bits (69), Expect = 0.74
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 4 MGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAETGPVQAFGRQEAGP-- 61
+G++ P AG +AG++ G R W W P++ AGP
Sbjct: 39 VGRRVPDAGSECVGHRAPDAGSVCGGAGPPMRGQWGW-----GAGSPMRGQSVWGAGPPM 93
Query: 62 -GEADWRSSSESAEAAESQKWGLGRP-PGGMNW-AGPKEATGRQEDLGLEILIQTFAPG 117
G+ W + S WG G P G + W AGP G L Q PG
Sbjct: 94 RGQWGWGAGS---PMRGQSVWGAGPPMRGQIVWSAGPPRVQGTLVHCPTRHLSQRRGPG 149
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.8 bits (68), Expect = 0.96
Identities = 47/175 (26%), Positives = 59/175 (33%), Gaps = 53/175 (30%)
Query: 49 GPVQAFGRQ-EAGPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGL 107
GP A G + E GP + S A A ++ G PPG +AGP A G
Sbjct: 795 GPAGANGEKGEVGPPGP---AGSAGARGAPGERGETG-PPGPAGFAGPPGADG------- 843
Query: 108 EILIQTFAPGEAAERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRREAGAVPGQ 167
Q A GE E + G +AGA G + PG
Sbjct: 844 ----QPGAKGEQGEAGQKG------------DAGA-------------PGPQGPSGAPGP 874
Query: 168 AYLTTVWSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLASRGPP 222
T V +G R G + P G + PGA + PG P GPP
Sbjct: 875 QGPTGVTGPKGAR----GAQGPPGATGFPGAAGRVGPPGSNGNP--------GPP 917
Score = 28.5 bits (62), Expect = 4.8
Identities = 48/176 (27%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 48 TGPVQAFGRQEAGPGEADWRSSSESAEAAESQ-KWGLGRPPGGMNWAGPKEATG------ 100
TGP A G Q PG + ++ S G PPG GPK A G
Sbjct: 881 TGPKGARGAQ-GPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 939
Query: 101 RQEDLGLEILIQTFAPGEAAERPELGLGRMIWACRGHREAGAVPGQAYLMTVWAYRGRRE 160
R + GL+ PGE E + G G + GQ ++ + RG R
Sbjct: 940 RAGEPGLQG--PAGPPGEKGEPGDDGPS----GAEGPPGPQGLAGQRGIVGLPGQRGERG 993
Query: 161 AGAVPGQAYLTTVWSCRGCREEELGLERPTG--GSAGP-GAHAKEQTPGRERPPRR 213
+PG + G + G P G G GP G +E +PG + PP R
Sbjct: 994 FPGLPGPSGEPGKQGAPGASGDR-GPPGPVGPPGLTGPAGEPGREGSPGADGPPGR 1048
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,712,651
Number of Sequences: 37866
Number of extensions: 627864
Number of successful extensions: 2229
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 2070
Number of HSP's gapped (non-prelim): 208
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.