Guide to the Human Genome
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Name: SETDB2 Sequence: fasta or formatted (719aa) NCBI GI: 238624095
Description:

SET domain, bifurcated 2 isoform a

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [707aa] SET domain, bifurcated 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         27           1
 C cysteine            4.2         30           2
 D aspartate           5.4         39           2
 E glutamate           7.9         57           2
 F phenylalanine       4.7         34           2
 G glycine             4.2         30           1
 H histidine           1.8         13           1
 I isoleucine          4.6         33           2
 K lysine              8.6         62           2
 L leucine             7.2         52           2
 M methionine          1.3          9           1
 N asparagine          7.2         52           2
 P proline             4.2         30           2
 Q glutamine           5.1         37           2
 R arginine            5.0         36           2
 S serine              8.6         62           3
 T threonine           6.8         49           2
 V valine              6.1         44           2
 W tryptophan          0.6          4           1
 Y tyrosine            2.6         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain, bifurcated 2 isoform a 
SETDB2                0.979   SET domain, bifurcated 2 isoform b 
SETDB1                0.149   SET domain, bifurcated 1 isoform 2 
SETDB1                0.149   SET domain, bifurcated 1 isoform 1 
EHMT2                 0.046   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.046   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT1                 0.046   euchromatic histone-lysine N-methyltransferase 1 is...
SETMAR                0.035   SET domain and mariner transposase fusion 
SUV39H1               0.032   suppressor of variegation 3-9 homolog 1 
SUV39H2               0.028   suppressor of variegation 3-9 homolog 2 
SETD1B                0.022   SET domain containing 1B 
ASH1L                 0.022   absent, small, or homeotic 1-like 
SETD2                 0.022   SET domain containing 2 
MLL4                  0.021   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL                   0.020   myeloid/lymphoid or mixed-lineage leukemia protein [...
SETD1A                0.020   SET domain containing 1A 
MLL2                  0.019   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL3                  0.019   myeloid/lymphoid or mixed-lineage leukemia 3 
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.017   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
EZH1                  0.017   enhancer of zeste homolog 1 
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.017   nuclear receptor binding SET domain protein 1 isofor...
EZH2                  0.015   enhancer of zeste 2 isoform b 
EZH2                  0.015   enhancer of zeste 2 isoform a 
WHSC1L1               0.015   WHSC1L1 protein isoform long 
BAZ2B                 0.011   bromodomain adjacent to zinc finger domain, 2B [Homo...
BAZ2A                 0.009   bromodomain adjacent to zinc finger domain, 2A [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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