Guide to the Human Genome
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Name: TLCD1 Sequence: fasta or formatted (200aa) NCBI GI: 237874289
Description:

TLC domain containing 1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {247aa} TLC domain containing 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         10           1
 C cysteine            1.5          3           1
 D aspartate           4.0          8           1
 E glutamate           3.0          6           1
 F phenylalanine       7.5         15           2
 G glycine             6.5         13           3
 H histidine           3.5          7           2
 I isoleucine          5.5         11           3
 K lysine              3.5          7           2
 L leucine            12.5         25           2
 M methionine          5.0         10           3
 N asparagine          2.5          5           1
 P proline             3.5          7           2
 Q glutamine           3.0          6           1
 R arginine            5.5         11           1
 S serine              7.0         14           2
 T threonine           5.0         10           1
 V valine              9.0         18           1
 W tryptophan          2.0          4           1
 Y tyrosine            5.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TLC domain containing 1 isoform 2 
TLCD1                 0.899   TLC domain containing 1 isoform 1 
TLCD2                 0.122   PREDICTED: TLC domain containing 2 
TLCD2                 0.122   PREDICTED: hypothetical protein 
TLCD2                 0.122   PREDICTED: TLC domain containing 2 
TMEM56                0.023   transmembrane protein 56 
UNC84A                0.021   unc-84 homolog A isoform a 
TM4SF1                0.010   transmembrane 4 superfamily member 1 
FAM57B                0.010   hypothetical protein LOC83723 
LPHN2                 0.010   latrophilin 2 precursor 
LIM2                  0.008   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LIM2                  0.008   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
OR8U9                 0.008   olfactory receptor, family 8, subfamily U, member 9 ...
ATP11A                0.005   ATPase, class VI, type 11A isoform b 
ADCY8                 0.005   adenylate cyclase 8 
ATP11A                0.005   ATPase, class VI, type 11A isoform a 
OR8U1                 0.005   olfactory receptor, family 8, subfamily U, member 1 ...
OR8U8                 0.005   olfactory receptor, family 8, subfamily U, member 8 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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