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Search of human proteins with 23110960
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23110960 cathepsin L2 preproprotein [Homo sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23110960 cathepsin L2 preproprotein [Homo sapiens] 704 0.0
gi|22202619 cathepsin L1 preproprotein [Homo sapiens] 552 e-157
gi|4503155 cathepsin L1 preproprotein [Homo sapiens] 552 e-157
gi|4503151 cathepsin K preproprotein [Homo sapiens] 333 1e-91
gi|23110962 cathepsin S preproprotein [Homo sapiens] 329 2e-90
gi|23110957 cathepsin H isoform b precursor [Homo sapiens] 229 3e-60
gi|23110955 cathepsin H isoform a preproprotein [Homo sapiens] 229 3e-60
gi|6042196 cathepsin F [Homo sapiens] 179 3e-45
gi|4557501 cathepsin O preproprotein [Homo sapiens] 141 9e-34
gi|23110964 cathepsin W preproprotein [Homo sapiens] 129 4e-30
gi|189083844 cathepsin C isoform a preproprotein [Homo sapiens] 124 1e-28
gi|239744067 PREDICTED: similar to Putative cathepsin L-like pro... 117 1e-26
gi|22538437 cathepsin B preproprotein [Homo sapiens] 98 1e-20
gi|22538435 cathepsin B preproprotein [Homo sapiens] 98 1e-20
gi|22538433 cathepsin B preproprotein [Homo sapiens] 98 1e-20
gi|22538431 cathepsin B preproprotein [Homo sapiens] 98 1e-20
gi|4503139 cathepsin B preproprotein [Homo sapiens] 98 1e-20
gi|22538442 cathepsin Z preproprotein [Homo sapiens] 94 2e-19
gi|224586907 tubulointerstitial nephritis antigen [Homo sapiens] 90 2e-18
gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo sa... 82 5e-16
gi|169189860 PREDICTED: similar to Cathepsin L1 [Homo sapiens] 74 1e-13
gi|46049092 nebulin-related anchoring protein isoform C [Homo sa... 30 3.0
gi|46049105 nebulin-related anchoring protein isoform S [Homo sa... 30 3.0
gi|149944640 zinc finger and BTB domain containing 34 [Homo sapi... 30 3.0
gi|51093381 leptin receptor isoform 3 [Homo sapiens] 29 6.7
gi|31442420 shroom family member 1 [Homo sapiens] 29 6.7
gi|109637798 RAD52 homolog [Homo sapiens] 28 8.8
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens] 28 8.8
>gi|23110960 cathepsin L2 preproprotein [Homo sapiens]
Length = 334
Score = 704 bits (1818), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE
Sbjct: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
Query: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW
Sbjct: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
Query: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK
Sbjct: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
Query: 301 NSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
NSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV
Sbjct: 301 NSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
>gi|22202619 cathepsin L1 preproprotein [Homo sapiens]
Length = 333
Score = 552 bits (1423), Expect = e-157
Identities = 259/334 (77%), Positives = 291/334 (87%), Gaps = 1/334 (0%)
Query: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
MN +L+LAAFCLGIASA FD +L+ +W +WKA H RLYG NEEGWRRAVWEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
LHN EY +GKH FTMAMNAFGDMT+EEFRQ+M F+N+K RKGKVF+EPLF + P+SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
R+KGYVTPVKNQ QCGSCWAFSATGALEGQMFRKTG+L+SLSEQNLVDCS PQGN+GCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
G M AFQYV++NGGLDSEESYPY A +E CKY P+ SVANDTGF V P +EKALMKAV
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGF-VDIPKQEKALMKAV 239
Query: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
ATVGPISVA+DAGH SF FYK GIYFEPDCSS+++DHGVLVVGYGFE S+N+KYWLVK
Sbjct: 240 ATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
Query: 301 NSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
NSWG EWG GYVK+AKD+ NHCGIA+AASYP V
Sbjct: 300 NSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
>gi|4503155 cathepsin L1 preproprotein [Homo sapiens]
Length = 333
Score = 552 bits (1423), Expect = e-157
Identities = 259/334 (77%), Positives = 291/334 (87%), Gaps = 1/334 (0%)
Query: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIE 60
MN +L+LAAFCLGIASA FD +L+ +W +WKA H RLYG NEEGWRRAVWEKNMKMIE
Sbjct: 1 MNPTLILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIE 60
Query: 61 LHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDW 120
LHN EY +GKH FTMAMNAFGDMT+EEFRQ+M F+N+K RKGKVF+EPLF + P+SVDW
Sbjct: 61 LHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDW 120
Query: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
R+KGYVTPVKNQ QCGSCWAFSATGALEGQMFRKTG+L+SLSEQNLVDCS PQGN+GCNG
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
G M AFQYV++NGGLDSEESYPY A +E CKY P+ SVANDTGF V P +EKALMKAV
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGF-VDIPKQEKALMKAV 239
Query: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVK 300
ATVGPISVA+DAGH SF FYK GIYFEPDCSS+++DHGVLVVGYGFE S+N+KYWLVK
Sbjct: 240 ATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
Query: 301 NSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
NSWG EWG GYVK+AKD+ NHCGIA+AASYP V
Sbjct: 300 NSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
>gi|4503151 cathepsin K preproprotein [Homo sapiens]
Length = 329
Score = 333 bits (854), Expect = 1e-91
Identities = 164/319 (51%), Positives = 213/319 (66%), Gaps = 14/319 (4%)
Query: 22 DQNLDTKWYQWKATHRRLYGAN-EEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAF 80
++ LDT W WK THR+ Y +E RR +WEKN+K I +HN E S G H + +AMN
Sbjct: 19 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 78
Query: 81 GDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLD-----LPKSVDWRKKGYVTPVKNQKQC 135
GDMT+EE Q M + + L++ P SVD+RKKGYVTPVKNQ QC
Sbjct: 79 GDMTSEEVVQKMTGLKVPLSHSRS--NDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQC 136
Query: 136 GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 195
GSCWAFS+ GALEGQ+ +KTGKL++LS QNLVDC N GC GG+M AFQYV++N G
Sbjct: 137 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRG 194
Query: 196 LDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHS 255
+DSE++YPYV +E C Y P A G+ + G EKAL +AVA VGP+SVA+DA +
Sbjct: 195 IDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLT 254
Query: 256 SFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKI 315
SFQFY G+Y++ C+S NL+H VL VGYG + N K+W++KNSWG WG+ GY+ +
Sbjct: 255 SFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGN----KHWIIKNSWGENWGNKGYILM 310
Query: 316 AKDKNNHCGIATAASYPNV 334
A++KNN CGIA AS+P +
Sbjct: 311 ARNKNNACGIANLASFPKM 329
>gi|23110962 cathepsin S preproprotein [Homo sapiens]
Length = 331
Score = 329 bits (843), Expect = 2e-90
Identities = 166/333 (49%), Positives = 222/333 (66%), Gaps = 10/333 (3%)
Query: 7 LAAFCLGIASAVPKF--DQNLDTKWYQWKATHRRLYGA-NEEGWRRAVWEKNMKMIELHN 63
L L +SAV + D LD W+ WK T+ + Y NEE RR +WEKN+K + LHN
Sbjct: 4 LVCVLLVCSSAVAQLHKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHN 63
Query: 64 GEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFR-NQKFRKGKVFREPLFLDLPKSVDWRK 122
E+S G H + + MN GDMT+EE +M R ++++ ++ LP SVDWR+
Sbjct: 64 LEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWRE 123
Query: 123 KGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ-GNQGCNGG 181
KG VT VK Q CG+CWAFSA GALE Q+ KTGKLVSLS QNLVDCS + GN+GCNGG
Sbjct: 124 KGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGG 183
Query: 182 FMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVA 241
FM AFQY+ +N G+DS+ SYPY A+D+ C+Y + A + +T + G+E L +AVA
Sbjct: 184 FMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVA 243
Query: 242 TVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKN 301
GP+SV +DA H SF Y+SG+Y+EP C ++N++HGVLVVGYG + N +YWLVKN
Sbjct: 244 NKGPVSVGVDARHPSFFLYRSGVYYEPSC-TQNVNHGVLVVGYG----DLNGKEYWLVKN 298
Query: 302 SWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
SWG +G GY+++A++K NHCGIA+ SYP +
Sbjct: 299 SWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 331
>gi|23110957 cathepsin H isoform b precursor [Homo sapiens]
Length = 323
Score = 229 bits (583), Expect = 3e-60
Identities = 124/304 (40%), Positives = 166/304 (54%), Gaps = 13/304 (4%)
Query: 32 WKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQM 91
W + HR+ Y E R + N + I HN G H F MA+N F DM+ E +
Sbjct: 26 WMSKHRKTYSTEEYHHRLQTFASNWRKINAHNN----GNHTFKMALNQFSDMSFAEIKHK 81
Query: 92 MGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKG-YVTPVKNQKQCGSCWAFSATGALEGQ 150
Q K P SVDWRKKG +V+PVKNQ CGSCW FS TGALE
Sbjct: 82 YLWSEPQNCSATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESA 141
Query: 151 MFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEI 210
+ TGK++SL+EQ LVDC++ N GC GG ++AF+Y+ N G+ E++YPY D
Sbjct: 142 IAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGY 201
Query: 211 CKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC 270
CK++P ++ + E+A+++AVA P+S A + F Y++GIY C
Sbjct: 202 CKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEV-TQDFMMYRTGIYSSTSC 260
Query: 271 --SSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATA 328
+ ++H VL VGYG N YW+VKNSWGP+WG NGY I + K N CG+A
Sbjct: 261 HKTPDKVNHAVLAVGYG----EKNGIPYWIVKNSWGPQWGMNGYFLIERGK-NMCGLAAC 315
Query: 329 ASYP 332
ASYP
Sbjct: 316 ASYP 319
>gi|23110955 cathepsin H isoform a preproprotein [Homo sapiens]
Length = 335
Score = 229 bits (583), Expect = 3e-60
Identities = 124/304 (40%), Positives = 166/304 (54%), Gaps = 13/304 (4%)
Query: 32 WKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQM 91
W + HR+ Y E R + N + I HN G H F MA+N F DM+ E +
Sbjct: 38 WMSKHRKTYSTEEYHHRLQTFASNWRKINAHNN----GNHTFKMALNQFSDMSFAEIKHK 93
Query: 92 MGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKG-YVTPVKNQKQCGSCWAFSATGALEGQ 150
Q K P SVDWRKKG +V+PVKNQ CGSCW FS TGALE
Sbjct: 94 YLWSEPQNCSATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESA 153
Query: 151 MFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEI 210
+ TGK++SL+EQ LVDC++ N GC GG ++AF+Y+ N G+ E++YPY D
Sbjct: 154 IAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGY 213
Query: 211 CKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC 270
CK++P ++ + E+A+++AVA P+S A + F Y++GIY C
Sbjct: 214 CKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEV-TQDFMMYRTGIYSSTSC 272
Query: 271 --SSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATA 328
+ ++H VL VGYG N YW+VKNSWGP+WG NGY I + K N CG+A
Sbjct: 273 HKTPDKVNHAVLAVGYG----EKNGIPYWIVKNSWGPQWGMNGYFLIERGK-NMCGLAAC 327
Query: 329 ASYP 332
ASYP
Sbjct: 328 ASYP 331
>gi|6042196 cathepsin F [Homo sapiens]
Length = 484
Score = 179 bits (454), Expect = 3e-45
Identities = 120/309 (38%), Positives = 164/309 (53%), Gaps = 35/309 (11%)
Query: 35 THRRLYGANEEG-WRRAVWEKNM----KMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR 89
T+ R Y + EE WR +V+ NM K+ L G G + F D+T EEFR
Sbjct: 193 TYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYG-------VTKFSDLTEEEFR 245
Query: 90 QMMGCFRNQKFRK---GKVFREPLFLDL-PKSVDWRKKGYVTPVKNQKQCGSCWAFSATG 145
+ + N RK K+ + DL P DWR KG VT VK+Q CGSCWAFS TG
Sbjct: 246 TI---YLNTLLRKEPGNKMKQAKSVGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTG 302
Query: 146 ALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 205
+EGQ F G L+SLSEQ L+DC + ++ C GG + A+ +K GGL++E+ Y Y
Sbjct: 303 NVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAIKNLGGLETEDDYSYQ 360
Query: 206 AVDEICKYRPENS--VANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSG 263
+ C + E + ND +V E+ L +A GPISVA++A QFY+ G
Sbjct: 361 GHMQSCNFSAEKAKVYIND---SVELSQNEQKLAAWLAKRGPISVAINA--FGMQFYRHG 415
Query: 264 IY--FEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNN 321
I P CS +DH VL+VGYG N ++ +W +KNSWG +WG GY + + +
Sbjct: 416 ISRPLRPLCSPWLIDHAVLLVGYG----NRSDVPFWAIKNSWGTDWGEKGYYYLHRG-SG 470
Query: 322 HCGIATAAS 330
CG+ T AS
Sbjct: 471 ACGVNTMAS 479
>gi|4557501 cathepsin O preproprotein [Homo sapiens]
Length = 321
Score = 141 bits (355), Expect = 9e-34
Identities = 93/263 (35%), Positives = 134/263 (50%), Gaps = 23/263 (8%)
Query: 77 MNAFGDMTNEEFRQMMGCFRNQKFRK--GKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQ 134
+N F + EEF+ + + KF + +V + LP DWR K VT V+NQ+
Sbjct: 69 INQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQM 128
Query: 135 CGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYV-KEN 193
CG CWAFS GA+E K L LS Q ++DCS N GCNGG A ++ K
Sbjct: 129 CGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCS--YNNYGCNGGSTLNALNWLNKMQ 186
Query: 194 GGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVA------PGKEKALMKAVATVGPIS 247
L + YP+ A + +C Y + +GF++ +E + KA+ T GP+
Sbjct: 187 VKLVKDSEYPFKAQNGLCHY----FSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLV 242
Query: 248 VAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEW 307
V +DA S+Q Y GI + CSS +H VL+ G+ G ++ YW+V+NSWG W
Sbjct: 243 VIVDA--VSWQDYLGGI-IQHHCSSGEANHAVLITGFDKTG----STPYWIVRNSWGSSW 295
Query: 308 GSNGYVKIAKDKNNHCGIATAAS 330
G +GY + K +N CGIA + S
Sbjct: 296 GVDGYAHV-KMGSNVCGIADSVS 317
>gi|23110964 cathepsin W preproprotein [Homo sapiens]
Length = 376
Score = 129 bits (324), Expect = 4e-30
Identities = 91/270 (33%), Positives = 132/270 (48%), Gaps = 30/270 (11%)
Query: 80 FGDMTNEEFRQMMGCFRNQKF--RKGKVFR-EPLFLDLPKSVDWRK-KGYVTPVKNQKQC 135
F D+T EEF Q+ G R G+ R E +P S DWRK G ++P+K+QK C
Sbjct: 91 FSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVAGAISPIKDQKNC 150
Query: 136 GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 195
CWA +A G +E V +S Q L+DC R GC+GGF+ AF V N G
Sbjct: 151 NCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRC--GDGCHGGFVWDAFITVLNNSG 208
Query: 196 LDSEESYPYVAVDEICKYRPEN--SVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAG 253
L SE+ YP+ + P+ VA F ++ E + + +AT GPI+V ++
Sbjct: 209 LASEKDYPFQGKVRAHRCHPKKYQKVAWIQDF-IMLQNNEHRIAQYLATYGPITVTINM- 266
Query: 254 HSSFQFYKSGIY--FEPDCSSKNLDHGVLVVGYGF---------EGANSNN-------SK 295
Q Y+ G+ C + +DH VL+VG+G E +S + +
Sbjct: 267 -KPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTP 325
Query: 296 YWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 325
YW++KNSWG +WG GY ++ + N CGI
Sbjct: 326 YWILKNSWGAQWGEKGYFRLHRGSNT-CGI 354
>gi|189083844 cathepsin C isoform a preproprotein [Homo sapiens]
Length = 463
Score = 124 bits (311), Expect = 1e-28
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 20/232 (8%)
Query: 112 LDLPKSVDWRKK---GYVTPVKNQKQCGSCWAFSATGALEGQM--FRKTGKLVSLSEQNL 166
L LP S DWR +V+PV+NQ CGSC++F++ G LE ++ + LS Q +
Sbjct: 229 LHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEV 288
Query: 167 VDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFT 226
V CS Q QGC GGF ++ GL E +PY D CK + + + +
Sbjct: 289 VSCS--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYH 346
Query: 227 VVAP---GKEKALMKA-VATVGPISVAMDAGHSSFQFYKSGIYF-----EPDCSSKNLDH 277
V G +ALMK + GP++VA + + F YK GIY +P + +H
Sbjct: 347 YVGGFYGGCNEALMKLELVHHGPMAVAFEV-YDDFLHYKKGIYHHTGLRDPFNPFELTNH 405
Query: 278 GVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAA 329
VL+VGYG + A+ + YW+VKNSWG WG NGY +I + + C I + A
Sbjct: 406 AVLLVGYGTDSASGMD--YWIVKNSWGTGWGENGYFRIRRG-TDECAIESIA 454
>gi|239744067 PREDICTED: similar to Putative cathepsin L-like
protein 6 [Homo sapiens]
Length = 81
Score = 117 bits (293), Expect = 1e-26
Identities = 55/77 (71%), Positives = 62/77 (80%)
Query: 56 MKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLP 115
MKM E HN EYSQGKH FTMAMN FGDMT EEFRQ+M F+ QK R GK F+E L L++P
Sbjct: 1 MKMTEQHNQEYSQGKHSFTMAMNTFGDMTTEEFRQVMNGFQYQKHRNGKQFQERLLLEIP 60
Query: 116 KSVDWRKKGYVTPVKNQ 132
SVDWR+KGYVTPVK+Q
Sbjct: 61 TSVDWREKGYVTPVKDQ 77
>gi|22538437 cathepsin B preproprotein [Homo sapiens]
Length = 339
Score = 97.8 bits (242), Expect = 1e-20
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 112 LDLPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSL--SEQN 165
L LP S D W + + +++Q CGSCWAF A A+ ++ T VS+ S ++
Sbjct: 78 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 137
Query: 166 LVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE--ESY----PYVA------------- 206
L+ C GCNGG+ A A+ + G + ES+ PY
Sbjct: 138 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 197
Query: 207 ---------VDEICK--YRPENSVANDTGFTVVA-PGKEKALMKAVATVGPISVAMDAGH 254
+IC+ Y P G+ + EK +M + GP+ A +
Sbjct: 198 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-Y 256
Query: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK 314
S F YKSG+Y H + ++G+G E N + YWLV NSW +WG NG+ K
Sbjct: 257 SDFLLYKSGVYQHVTGEMMG-GHAIRILGWGVE----NGTPYWLVANSWNTDWGDNGFFK 311
Query: 315 IAKDKNNHCGI 325
I + + +HCGI
Sbjct: 312 ILRGQ-DHCGI 321
>gi|22538435 cathepsin B preproprotein [Homo sapiens]
Length = 339
Score = 97.8 bits (242), Expect = 1e-20
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 112 LDLPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSL--SEQN 165
L LP S D W + + +++Q CGSCWAF A A+ ++ T VS+ S ++
Sbjct: 78 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 137
Query: 166 LVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE--ESY----PYVA------------- 206
L+ C GCNGG+ A A+ + G + ES+ PY
Sbjct: 138 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 197
Query: 207 ---------VDEICK--YRPENSVANDTGFTVVA-PGKEKALMKAVATVGPISVAMDAGH 254
+IC+ Y P G+ + EK +M + GP+ A +
Sbjct: 198 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-Y 256
Query: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK 314
S F YKSG+Y H + ++G+G E N + YWLV NSW +WG NG+ K
Sbjct: 257 SDFLLYKSGVYQHVTGEMMG-GHAIRILGWGVE----NGTPYWLVANSWNTDWGDNGFFK 311
Query: 315 IAKDKNNHCGI 325
I + + +HCGI
Sbjct: 312 ILRGQ-DHCGI 321
>gi|22538433 cathepsin B preproprotein [Homo sapiens]
Length = 339
Score = 97.8 bits (242), Expect = 1e-20
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 112 LDLPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSL--SEQN 165
L LP S D W + + +++Q CGSCWAF A A+ ++ T VS+ S ++
Sbjct: 78 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 137
Query: 166 LVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE--ESY----PYVA------------- 206
L+ C GCNGG+ A A+ + G + ES+ PY
Sbjct: 138 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 197
Query: 207 ---------VDEICK--YRPENSVANDTGFTVVA-PGKEKALMKAVATVGPISVAMDAGH 254
+IC+ Y P G+ + EK +M + GP+ A +
Sbjct: 198 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-Y 256
Query: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK 314
S F YKSG+Y H + ++G+G E N + YWLV NSW +WG NG+ K
Sbjct: 257 SDFLLYKSGVYQHVTGEMMG-GHAIRILGWGVE----NGTPYWLVANSWNTDWGDNGFFK 311
Query: 315 IAKDKNNHCGI 325
I + + +HCGI
Sbjct: 312 ILRGQ-DHCGI 321
>gi|22538431 cathepsin B preproprotein [Homo sapiens]
Length = 339
Score = 97.8 bits (242), Expect = 1e-20
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 112 LDLPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSL--SEQN 165
L LP S D W + + +++Q CGSCWAF A A+ ++ T VS+ S ++
Sbjct: 78 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 137
Query: 166 LVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE--ESY----PYVA------------- 206
L+ C GCNGG+ A A+ + G + ES+ PY
Sbjct: 138 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 197
Query: 207 ---------VDEICK--YRPENSVANDTGFTVVA-PGKEKALMKAVATVGPISVAMDAGH 254
+IC+ Y P G+ + EK +M + GP+ A +
Sbjct: 198 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-Y 256
Query: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK 314
S F YKSG+Y H + ++G+G E N + YWLV NSW +WG NG+ K
Sbjct: 257 SDFLLYKSGVYQHVTGEMMG-GHAIRILGWGVE----NGTPYWLVANSWNTDWGDNGFFK 311
Query: 315 IAKDKNNHCGI 325
I + + +HCGI
Sbjct: 312 ILRGQ-DHCGI 321
>gi|4503139 cathepsin B preproprotein [Homo sapiens]
Length = 339
Score = 97.8 bits (242), Expect = 1e-20
Identities = 74/251 (29%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 112 LDLPKSVD----WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSL--SEQN 165
L LP S D W + + +++Q CGSCWAF A A+ ++ T VS+ S ++
Sbjct: 78 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 137
Query: 166 LVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSE--ESY----PYVA------------- 206
L+ C GCNGG+ A A+ + G + ES+ PY
Sbjct: 138 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 197
Query: 207 ---------VDEICK--YRPENSVANDTGFTVVA-PGKEKALMKAVATVGPISVAMDAGH 254
+IC+ Y P G+ + EK +M + GP+ A +
Sbjct: 198 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-Y 256
Query: 255 SSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK 314
S F YKSG+Y H + ++G+G E N + YWLV NSW +WG NG+ K
Sbjct: 257 SDFLLYKSGVYQHVTGEMMG-GHAIRILGWGVE----NGTPYWLVANSWNTDWGDNGFFK 311
Query: 315 IAKDKNNHCGI 325
I + + +HCGI
Sbjct: 312 ILRGQ-DHCGI 321
>gi|22538442 cathepsin Z preproprotein [Homo sapiens]
Length = 303
Score = 94.0 bits (232), Expect = 2e-19
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 36/227 (15%)
Query: 113 DLPKSVDWRKK---GYVTPVKNQ---KQCGSCWAFSATGALEGQM-FRKTGKLVS--LSE 163
DLPKS DWR Y + +NQ + CGSCWA ++T A+ ++ ++ G S LS
Sbjct: 61 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 120
Query: 164 QNLVDCSRPQGNQG-CNGGFMARAFQYVKENGGLDSEESYPYVAVDEIC----------K 212
QN++DC GN G C GG + Y ++G + E Y A D+ C +
Sbjct: 121 QNVIDC----GNAGSCEGGNDLSVWDYAHQHG-IPDETCNNYQAKDQECDKFNQCGTCNE 175
Query: 213 YRPENSVANDTGFTV----VAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP 268
++ +++ N T + V G+EK + + A GPIS + A Y GIY E
Sbjct: 176 FKECHAIRNYTLWRVGDYGSLSGREKMMAEIYAN-GPISCGIMATERLAN-YTGGIYAEY 233
Query: 269 DCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKI 315
+ ++H V V G+G S+ ++YW+V+NSWG WG G+++I
Sbjct: 234 Q-DTTYINHVVSVAGWGI----SDGTEYWIVRNSWGEPWGERGWLRI 275
>gi|224586907 tubulointerstitial nephritis antigen [Homo sapiens]
Length = 476
Score = 90.1 bits (222), Expect = 2e-18
Identities = 83/305 (27%), Positives = 127/305 (41%), Gaps = 61/305 (20%)
Query: 65 EYSQGKHGFTMA-MNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLD-------LPK 116
+ ++G +G+T + F MT E+ KFR G + P+ L LP
Sbjct: 163 QVNKGDYGWTAQNYSQFWGMTLED---------GFKFRLGTLPPSPMLLSMNEMTASLPA 213
Query: 117 SVD--------WRKKGYVTPVKNQKQCGSCWAFS-ATGALEGQMFRKTGKLVS-LSEQNL 166
+ D ++ G+ +QK C + WAFS A+ A + + G+ + LS QNL
Sbjct: 214 TTDLPEFFVASYKWPGWTHGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNL 273
Query: 167 VDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYV----AVDEIC----------- 211
+ C + GCN G + RA+ Y+++ G L S YP A + C
Sbjct: 274 ISCCA-KNRHGCNSGSIDRAWWYLRKRG-LVSHACYPLFKDQNATNNGCAMASRSDGRGK 331
Query: 212 ----KYRPENSVANDTGFTVVAP----GKEKALMKAVATVGPISVAMDAGHSSFQFYKSG 263
K P N ++ + P E +MK + GP+ M F YK+G
Sbjct: 332 RHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAIMQVREDFFH-YKTG 390
Query: 264 IYFEPDCSSKNLD-------HGVLVVGYG-FEGANSNNSKYWLVKNSWGPEWGSNGYVKI 315
IY ++K + H V + G+G GA K+W+ NSWG WG NGY +I
Sbjct: 391 IYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRI 450
Query: 316 AKDKN 320
+ N
Sbjct: 451 LRGVN 455
>gi|11545918 tubulointerstitial nephritis antigen-like 1 [Homo
sapiens]
Length = 467
Score = 82.4 bits (202), Expect = 5e-16
Identities = 64/226 (28%), Positives = 92/226 (40%), Gaps = 39/226 (17%)
Query: 131 NQKQCGSCWAFSATGALEGQM-FRKTGKLVS-LSEQNLVDCSRPQGNQGCNGGFMARAFQ 188
+Q C WAFS ++ G + LS QNL+ C Q QGC GG + A+
Sbjct: 222 DQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQ-QQGCRGGRLDGAWW 280
Query: 189 YVKENGGLDSEESYPYVAV--DEICKYRP-------------------ENSVANDTGFTV 227
+++ G + S+ YP+ DE P NS N+
Sbjct: 281 FLRRRGVV-SDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQ 339
Query: 228 VAP-----GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFE-------PDCSSKNL 275
V P +K +MK + GP+ M+ H F YK GIY P+ ++
Sbjct: 340 VTPVYRLGSNDKEIMKELMENGPVQALMEV-HEDFFLYKGGIYSHTPVSLGRPERYRRHG 398
Query: 276 DHGVLVVGYGFEGANSNNS-KYWLVKNSWGPEWGSNGYVKIAKDKN 320
H V + G+G E + KYW NSWGP WG G+ +I + N
Sbjct: 399 THSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVN 444
>gi|169189860 PREDICTED: similar to Cathepsin L1 [Homo sapiens]
Length = 51
Score = 74.3 bits (181), Expect = 1e-13
Identities = 35/51 (68%), Positives = 40/51 (78%)
Query: 1 MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAV 51
MN SL+LAAF LGIASA D +LD +W +WKA H+RLYG NEEGWRRAV
Sbjct: 1 MNPSLLLAAFFLGIASAALTRDHSLDAQWTKWKAKHKRLYGMNEEGWRRAV 51
>gi|46049092 nebulin-related anchoring protein isoform C [Homo
sapiens]
Length = 1695
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 118 VDWRKKGYVTPVKNQKQCGSCW----AFSATGALEGQMFRKTGKLVS 160
V+W KK Y NQ + W + ATG+L + +K G+L+S
Sbjct: 876 VEWAKKAYGLQSDNQYRADVKWMKGMGWVATGSLNVEQAKKAGELIS 922
>gi|46049105 nebulin-related anchoring protein isoform S [Homo
sapiens]
Length = 1730
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 118 VDWRKKGYVTPVKNQKQCGSCW----AFSATGALEGQMFRKTGKLVS 160
V+W KK Y NQ + W + ATG+L + +K G+L+S
Sbjct: 911 VEWAKKAYGLQSDNQYRADVKWMKGMGWVATGSLNVEQAKKAGELIS 957
>gi|149944640 zinc finger and BTB domain containing 34 [Homo
sapiens]
Length = 500
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 62 HNGEYSQGKHGFTMAMNAFGDMTNEE-FRQMMGCFRNQKFRKGKVFREPLFLDL 114
H YSQ T AFG ++N R M+ CFR + R+ + L DL
Sbjct: 281 HAYSYSQAASQPTNVSEAFGSLSNSSPSRSMLSCFRGGRARQKRALSVHLHSDL 334
>gi|51093381 leptin receptor isoform 3 [Homo sapiens]
Length = 958
Score = 28.9 bits (63), Expect = 6.7
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 122 KKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKT--GKLVSLSEQNLVDCSRPQG 174
KK + V N K C + LEG MF K+ L+S S Q C RPQG
Sbjct: 868 KKLFWEDVPNPKNCSWAQGLNFQKMLEGSMFVKSHHHSLIS-STQGHKHCGRPQG 921
>gi|31442420 shroom family member 1 [Homo sapiens]
Length = 847
Score = 28.9 bits (63), Expect = 6.7
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 272 SKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAK 317
S NLD G L +G F A+ + S V SWG GS G + I +
Sbjct: 284 SMNLDSGSLKLGDAFRPASRSRSASGEVLGSWG---GSGGTIPIVQ 326
>gi|109637798 RAD52 homolog [Homo sapiens]
Length = 418
Score = 28.5 bits (62), Expect = 8.8
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 36 HRRLYGANE----EGWRRAVWEKNMKMIELHNGEYSQGKHGF 73
HR + ANE GW ++ ++N+ ++L+NG++ G F
Sbjct: 69 HRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAF 110
>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
Length = 2156
Score = 28.5 bits (62), Expect = 8.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 159 VSLSEQNLVDCSR-------PQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEIC 211
V +E ++V+CS P N G F+ + +++ + GL D +C
Sbjct: 937 VCRNETSVVNCSNNSFSGNDPHTNSGKISNFVMESNKHITKIAGLTG---------DNLC 987
Query: 212 KYRPENSVANDTG 224
K ++ +ANDTG
Sbjct: 988 KEGDKSFIANDTG 1000
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,969,657
Number of Sequences: 37866
Number of extensions: 559154
Number of successful extensions: 1111
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 40
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.