Search of human proteins with 22748675

Search of human proteins with 22748675

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22748675 RAB42, member RAS oncogene family [Homo sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22748675 RAB42, member RAS oncogene family [Homo sapiens]          214   2e-56
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]          77   2e-15
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]           77   3e-15
gi|254281345 RAB2B protein isoform 2 [Homo sapiens]                    60   3e-10
gi|21361884 RAB2B protein isoform 1 [Homo sapiens]                     60   3e-10
gi|19923483 GTPase Rab14 [Homo sapiens]                                55   9e-09
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]            55   1e-08
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]           54   3e-08
gi|4758984 Ras-related protein Rab-11A [Homo sapiens]                  52   1e-07
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]           52   1e-07
gi|11967981 RAB17, member RAS oncogene family [Homo sapiens]           51   2e-07
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...    51   2e-07
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]            51   2e-07
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa...    50   3e-07
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa...    50   3e-07
gi|117938299 RAB6C-like [Homo sapiens]                                 50   4e-07
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]            50   4e-07
gi|33946329 ras related v-ral simian leukemia viral oncogene hom...    50   5e-07
gi|116812567 RAB25 [Homo sapiens]                                      50   5e-07
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]           50   5e-07
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]           49   6e-07
gi|4506405 v-ral simian leukemia viral oncogene homolog B [Homo ...    49   8e-07
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]           49   8e-07
gi|4505451 neuroblastoma RAS viral (v-ras) oncogene homolog [Hom...    49   1e-06
gi|16933567 mel transforming oncogene [Homo sapiens]                   48   1e-06
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa...    48   1e-06
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]             48   1e-06
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]             48   1e-06
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]            48   1e-06
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]           48   1e-06

>gi|22748675 RAB42, member RAS oncogene family [Homo sapiens]
          Length = 105

 Score =  214 bits (544), Expect = 2e-56
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MATQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTL 60
           MATQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTL
Sbjct: 1   MATQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTL 60

Query: 61  ADAIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC 105
           ADAIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC
Sbjct: 61  ADAIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC 105


>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
          Length = 213

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 35/78 (44%), Positives = 56/78 (71%)

Query: 6   PDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           P +++F+LVGHK DL + R V+  EAE+LAA+ GM ++ETS ++  NV+ AF  L   I 
Sbjct: 113 PYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIY 172

Query: 66  QALQQGDIKLEEGWGGVR 83
           + +++G+I ++EGW GV+
Sbjct: 173 ELVKRGEITIQEGWEGVK 190


>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score = 77.0 bits (188), Expect = 3e-15
 Identities = 35/78 (44%), Positives = 56/78 (71%)

Query: 6   PDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           P +++FLLVGHK DL S R V+ +EAE+L+A  GM ++ETS K+  NV+ +F  L   I 
Sbjct: 117 PFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIY 176

Query: 66  QALQQGDIKLEEGWGGVR 83
           + +++G+I +++GW GV+
Sbjct: 177 ELIKKGEICIQDGWEGVK 194


>gi|254281345 RAB2B protein isoform 2 [Homo sapiens]
          Length = 170

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQAL 68
           ++ +L+G+KSDL+S R V  +E E  A   G+ F+ETS K  CNV+ AF   A  I + +
Sbjct: 66  MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 125

Query: 69  QQGDIKLEEGWGGVRLIHKTQIPRS--PSRKQHS 100
           QQG   +     G+++  +  I  S  PS  Q +
Sbjct: 126 QQGLFDVHNEANGIKIGPQQSISTSVGPSASQRN 159


>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
          Length = 216

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQAL 68
           ++ +L+G+KSDL+S R V  +E E  A   G+ F+ETS K  CNV+ AF   A  I + +
Sbjct: 112 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 171

Query: 69  QQGDIKLEEGWGGVRLIHKTQIPRS--PSRKQHS 100
           QQG   +     G+++  +  I  S  PS  Q +
Sbjct: 172 QQGLFDVHNEANGIKIGPQQSISTSVGPSASQRN 205


>gi|19923483 GTPase Rab14 [Homo sapiens]
          Length = 215

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)

Query: 10  IFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQ 69
           + +L+G+K+DL++ R V+ +EA++ A   G+ F+E S K   NV+ AF   A  I Q +Q
Sbjct: 118 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 177

Query: 70  QGDIKLEEGWGGVRLIHKTQIPR-----SPSRKQHSGPCQC 105
            G + L     GV+  HK   P+     S  + Q  G C C
Sbjct: 178 DGSLDLNAAESGVQ--HKPSAPQGGRLTSEPQPQREG-CGC 215


>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQAL 68
           ++ +L+G+KSDL+S R V  +E E  A   G+ F+ETS K   NV+ AF   A  I + +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171

Query: 69  QQGDIKLEEGWGGVRL 84
           Q+G   +     G+++
Sbjct: 172 QEGVFDINNEANGIKI 187


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQQG 71
           LLVG+KSDL + + V    A+E A SLG+ F+ETS KN  NV+ AF T+A  I++ +  G
Sbjct: 117 LLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG 176


>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
          Length = 216

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQAL 68
           ++ +LVG+KSDL+  R V   EA   A   G++F+ETS  ++ NV+ AF T+   I + +
Sbjct: 117 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176

Query: 69  QQ 70
            Q
Sbjct: 177 SQ 178


>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
          Length = 208

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 3   TQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLAD 62
           T+    VI +LVG+K+DL   R ++ +E E+ A  L + F+ETS K   NV   F  +A 
Sbjct: 113 TERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAS 172

Query: 63  AIQQALQQGDIKLEEGWGGVRLIHKTQIPRSPSRKQHSGPCQC 105
           A+   ++    K +EG   ++L    + P S       G C C
Sbjct: 173 AL-PGMENVQEKSKEGMIDIKLDKPQEPPAS------EGGCSC 208


>gi|11967981 RAB17, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 6   PDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           P +V+ +LVG+K+DL   R V+ QE +E A S  + F+ETS K N  V   F+T+A   Q
Sbjct: 122 PGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVA---Q 178

Query: 66  QALQQGDIKLEEG 78
           + LQ+ D   EEG
Sbjct: 179 ELLQRSD---EEG 188


>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQQG 71
           LLVG+K DL + + V    A+E A SLG+ F+ETS KN  NV+ +F T+A  I++ +  G
Sbjct: 120 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 179


>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
          Length = 220

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQ 66
           D    LLVG+K D++  R VS++   +LA  LG  F E S K+N NV   F+ L D I +
Sbjct: 126 DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 185

Query: 67  ALQQ 70
            + +
Sbjct: 186 KMSE 189


>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
           sapiens]
          Length = 223

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           V+ +L+G+K+D+ S R + +++ E LA   G+ F+ETS K   NV+LAF  +A  ++
Sbjct: 136 VVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELK 192


>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
           sapiens]
          Length = 216

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 22/57 (38%), Positives = 38/57 (66%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           V+ +L+G+K+D+ S R + +++ E LA   G+ F+ETS K   NV+LAF  +A  ++
Sbjct: 129 VVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELK 185


>gi|117938299 RAB6C-like [Homo sapiens]
          Length = 254

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 3   TQGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLAD 62
           T+G   VI  LVG+K+DL   R VS +E E  A  L + F+ET  K   NV   F  +A 
Sbjct: 113 TEGGSDVIITLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAA 172

Query: 63  AI--QQALQQG------DIKLEE 77
           A+   ++ Q G      DIKLE+
Sbjct: 173 ALPGMESTQDGSREDMSDIKLEK 195


>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
          Length = 219

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQ 66
           D    +LVG+K DL+  R V A++   LA  LG  F E S K N NV   F+ L D I +
Sbjct: 126 DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185

Query: 67  ALQQ 70
            + +
Sbjct: 186 KMNE 189


>gi|33946329 ras related v-ral simian leukemia viral oncogene
           homolog A [Homo sapiens]
          Length = 206

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQ 66
           + V FLLVG+KSDL+  R VS +EA+  A    + +VETS K   NVD  F  L   I +
Sbjct: 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI-R 176

Query: 67  ALQQGDIKLEEG 78
           A +  D K + G
Sbjct: 177 ARKMEDSKEKNG 188


>gi|116812567 RAB25 [Homo sapiens]
          Length = 213

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAI 64
           ++ +LVG+KSDL   R V  +EA   A + G+ F+ETS  ++ NV+LAF+T+   I
Sbjct: 118 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173


>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
          Length = 256

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 9   VIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQ 66
           V  +L+G+K D    R V  ++ E+LA   G+ F+ETS K   NVDLAF  +A  ++Q
Sbjct: 170 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQ 227


>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
          Length = 227

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAI 64
           D    +LVG+K D++  R +S +  + L   LG  F ETS K+N NV   F+ L D I
Sbjct: 134 DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191


>gi|4506405 v-ral simian leukemia viral oncogene homolog B [Homo
           sapiens]
          Length = 206

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQ 65
           DK+  L+VG+KSDL+  R V  +EA   A   G+ +VETS K   NVD  F  L   I+
Sbjct: 119 DKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR 177


>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score = 48.9 bits (115), Expect = 8e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 16/88 (18%)

Query: 4   QGPDKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADA 63
           + PD V   L+G+K+DL   R V+ ++A ELA   G+ + ETS     NV+ A +TL D 
Sbjct: 124 ENPDIV---LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180

Query: 64  IQQALQQGDIKLEEGWGGVRLIHKTQIP 91
           I + ++Q              + KTQIP
Sbjct: 181 IMKRMEQ-------------CVEKTQIP 195


>gi|4505451 neuroblastoma RAS viral (v-ras) oncogene homolog [Homo
           sapiens]
          Length = 189

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQ 66
           D V  +LVG+K DL  TR V  ++A ELA S G+ F+ETS K    V+ AF TL   I+Q
Sbjct: 107 DDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 165


>gi|16933567 mel transforming oncogene [Homo sapiens]
          Length = 207

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAIQQALQQG 71
           +++G+K D+   R VS +  E+LA   G+ F+ETS K N NV+ AF TLA  I+  +   
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM--- 173

Query: 72  DIKLE 76
           D KLE
Sbjct: 174 DKKLE 178


>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
           family [Homo sapiens]
          Length = 327

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLA 61
           LL+G+K D+++ R V  ++A++LA   G+ F ETS K++ NVD AF +LA
Sbjct: 241 LLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290


>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLA 61
           LL+G+K D+++ R V  ++A++LA   G+ F ETS K++ NVD AF +LA
Sbjct: 241 LLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290


>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLA 61
           LL+G+K D+++ R V  ++A++LA   G+ F ETS K++ NVD AF +LA
Sbjct: 241 LLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290


>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 12  LLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLA 61
           LL+G+K D+++ R V  ++A++LA   G+ F ETS K++ NVD AF +LA
Sbjct: 117 LLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 166


>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
          Length = 222

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 7   DKVIFLLVGHKSDLQSTRCVSAQEAEELAASLGMAFVETSVKNNCNVDLAFDTLADAI 64
           D V+ +L+G+K DL + R V+A++ EE + +L + F+ETS K   NV   F  +A A+
Sbjct: 135 DDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASAL 192


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,774,328
Number of Sequences: 37866
Number of extensions: 121944
Number of successful extensions: 421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 126
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.