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Search of human proteins with 226502212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi... 390 e-109
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens] 148 3e-36
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 134 6e-32
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 112 3e-25
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ... 112 3e-25
gi|211059437 hypothetical protein LOC284428 [Homo sapiens] 112 3e-25
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 111 4e-25
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 111 4e-25
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro... 107 5e-24
gi|154240671 HEAT repeat family member 7B2 [Homo sapiens] 30 1.3
gi|4504151 granulin precursor [Homo sapiens] 30 1.7
gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo s... 29 2.2
gi|7705387 GTF2I repeat domain containing 1 isoform 1 [Homo sapi... 29 2.9
gi|15011924 GTF2I repeat domain containing 1 isoform 2 [Homo sap... 29 2.9
gi|50726952 retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sap... 29 2.9
gi|54792088 hypothetical protein LOC23506 [Homo sapiens] 29 2.9
gi|7657465 podocalyxin-like 2 [Homo sapiens] 28 4.9
gi|21389501 coiled-coil domain containing 52 [Homo sapiens] 28 6.4
gi|93204865 hypothetical protein LOC57724 [Homo sapiens] 28 6.4
gi|21361633 leucine rich repeat containing 40 [Homo sapiens] 28 6.4
gi|118572603 ubinuclein 1 [Homo sapiens] 27 8.4
gi|118572601 ubinuclein 1 [Homo sapiens] 27 8.4
gi|31881770 ADAM metallopeptidase domain 30 preproprotein [Homo ... 27 8.4
>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
Length = 194
Score = 390 bits (1001), Expect = e-109
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE 60
MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE
Sbjct: 1 MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE 60
Query: 61 KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP 120
KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP
Sbjct: 61 KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP 120
Query: 121 HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE 180
HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE
Sbjct: 121 HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE 180
Query: 181 AEKVRDQEGRPEKR 194
AEKVRDQEGRPEKR
Sbjct: 181 AEKVRDQEGRPEKR 194
>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 148 bits (373), Expect = 3e-36
Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 2/193 (1%)
Query: 1 MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE 60
M KS QR + D NQ K KP L+T++P+R ++ FK+PVT+IT HP N+V+ +++++
Sbjct: 74 MNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKVKSDP-QKAVD 132
Query: 61 KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP 120
+P+Q+ W+++L GL A+ A EL T+DL LQ + P T +LL +AS L H+ MP
Sbjct: 133 QPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL-HTSTMP 191
Query: 121 HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE 180
S AVE P + +Q LCK F+VT+EDIRKQE V+ VR+RL AL+AD LA+
Sbjct: 192 ITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMADMLAHV 251
Query: 181 AEKVRDQEGRPEK 193
E RD E +K
Sbjct: 252 EELARDGEAPLDK 264
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 134 bits (336), Expect = 6e-32
Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
Query: 1 MAKSSQRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLE 60
+ K+ QR + D +NQ K KP L+T++P+R ++ FK+PVT++T HP N+V+ + E
Sbjct: 218 LQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKVKSDP-QRMNE 276
Query: 61 KPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMP 120
+P+Q+ W++RLQGL A ++ T++L LQ + P +LL +AS L H+ P
Sbjct: 277 QPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASAL-HTSSAP 335
Query: 121 HLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANE 180
S AVE PA + SQ LCK F+VT+EDIRKQE +V+ VR++L AL+AD L+
Sbjct: 336 ITGQVSAAVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMADILSRA 395
Query: 181 AE 182
A+
Sbjct: 396 AD 397
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 112 bits (279), Expect = 3e-25
Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRSPLEPTPGR 145
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA +AE
Sbjct: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
4-like [Homo sapiens]
Length = 208
Score = 112 bits (279), Expect = 3e-25
Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRIPLEPTPGR 145
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA +AE
Sbjct: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
Length = 208
Score = 112 bits (279), Expect = 3e-25
Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRIPLEPTPGR 145
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA +AE
Sbjct: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 111 bits (277), Expect = 4e-25
Identities = 77/179 (43%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRSPLEPTPGR 145
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA AE
Sbjct: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARRAE 203
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 111 bits (277), Expect = 4e-25
Identities = 77/179 (43%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRSPLEPTPGR 145
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA AE
Sbjct: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARRAE 203
>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
Length = 193
Score = 107 bits (268), Expect = 5e-24
Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 13 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 72
Query: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
C R+LQ LQ SS GE SS L L + L L P SL D A P+
Sbjct: 73 CAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESL--DRAGAERVRSPLEPTPGR 130
Query: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA AE
Sbjct: 131 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARRAE 188
>gi|154240671 HEAT repeat family member 7B2 [Homo sapiens]
Length = 1585
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 70 RLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGS----LLEDLASGLEHSCPMPHLACS 125
RLQGLQ + ++ + +++ + K+V + LE++ GLE P AC
Sbjct: 969 RLQGLQEGLESDDVQVQIKISSKIAKIVSKFIPNEEILMFLEEMLDGLESLNPTCTKACG 1028
Query: 126 SDAVEIIPAEGVGISQLL 143
+ ++ +G + L
Sbjct: 1029 IWMITVLKQQGAALEDQL 1046
>gi|4504151 granulin precursor [Homo sapiens]
Length = 593
Score = 29.6 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 103 GSLLEDLASGLEHSCPMPHLACSSDAVEIIPAEGV 137
GS +L SG CPMP+ C SD + P + V
Sbjct: 218 GSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTV 252
>gi|149408115 unkempt homolog (Drosophila)-like isoform 1 [Homo
sapiens]
Length = 232
Score = 29.3 bits (64), Expect = 2.2
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 51 RYHQWEESLEKPQQVC--WQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLED 108
+ QWEES ++ +QVC WQR Q +A A S LA LQK L++
Sbjct: 82 KIRQWEESWQQVKQVCDAWQREAQ--EAKERARVADSDRQLA--LQKKEEVEAQVKQLQE 137
Query: 109 LASGLEHSCPMPHLACSSD 127
GL + +P L D
Sbjct: 138 ELEGLGVASTLPGLRGCGD 156
>gi|7705387 GTF2I repeat domain containing 1 isoform 1 [Homo
sapiens]
Length = 959
Score = 28.9 bits (63), Expect = 2.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 91 NTLQKLVPSYTGGSLLEDLASGLEHSCPMPH--LACSSDAVEII 132
NTL++ V E L GL+H P+P+ +AC +AVEI+
Sbjct: 349 NTLRECVQILFNSRYAEAL--GLDHMVPVPYRKIACDPEAVEIV 390
>gi|15011924 GTF2I repeat domain containing 1 isoform 2 [Homo
sapiens]
Length = 944
Score = 28.9 bits (63), Expect = 2.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 91 NTLQKLVPSYTGGSLLEDLASGLEHSCPMPH--LACSSDAVEII 132
NTL++ V E L GL+H P+P+ +AC +AVEI+
Sbjct: 349 NTLRECVQILFNSRYAEAL--GLDHMVPVPYRKIACDPEAVEIV 390
>gi|50726952 retinol dehydrogenase 5 (11-cis and 9-cis) [Homo
sapiens]
Length = 318
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 57 ESLEKPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLV 97
ESLEK Q CW R QA+ L+ L + + L+
Sbjct: 216 ESLEKTLQACWARLPPATQAHYGGAFLTKYLKMQQRIMNLI 256
>gi|54792088 hypothetical protein LOC23506 [Homo sapiens]
Length = 1079
Score = 28.9 bits (63), Expect = 2.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 102 GGSLLEDLASGLEHSCP--MPHLACSSDAVEIIPAEGVGISQLLCKQFLVTEEDIRKQEG 159
G +L+ L H+ H SDAV+ + +S +C+ + TEED+RK +
Sbjct: 701 GAFILQQLQRDQAHTVTPDKSHFRSLSDAVQRL------LSYHVCQGSMPTEEDLRKVDN 754
Query: 160 KVKTVRERL 168
+ +TV +L
Sbjct: 755 EFETVATQL 763
>gi|7657465 podocalyxin-like 2 [Homo sapiens]
Length = 605
Score = 28.1 bits (61), Expect = 4.9
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 13/54 (24%)
Query: 66 CWQRRLQGLQAYSSAGEL---------SSTLDLA----NTLQKLVPSYTGGSLL 106
CWQRRL L+ S EL + TLD+A + +Q+ PS GG L
Sbjct: 524 CWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVASDSQSEMQEKHPSLNGGGAL 577
>gi|21389501 coiled-coil domain containing 52 [Homo sapiens]
Length = 855
Score = 27.7 bits (60), Expect = 6.4
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 5 SQRKQRDCVNQCKSKPGL-STSIPLR--MSSYTFKRPVTRITPHPGNEVRY--HQWEESL 59
+ RKQ+ +N+ K KP L + S P + S T + T + +++ H+ E +
Sbjct: 286 NSRKQKQLLNKVKRKPNLHALSKPKKNISSGSTTSADLPNRTNSNLDVLKHMIHEVEHEM 345
Query: 60 EKPQQVCWQ-RRLQGLQAYSSAGELSSTLDLANTLQKLV 97
E+ ++ W R ++GLQ SS G TL L ++L +LV
Sbjct: 346 EEYER--WTGREVKGLQ--SSQGLTGFTLSLVSSLCRLV 380
>gi|93204865 hypothetical protein LOC57724 [Homo sapiens]
Length = 2579
Score = 27.7 bits (60), Expect = 6.4
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 52 YHQWEESLEKPQQVCWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLAS 111
YH+++E++ Q L+++S+ LS LD + P +L +L
Sbjct: 1456 YHEFQETVGLWTQA-------KLESHSTPCSLSVQLDFTD------PLLAKERVLSNLR- 1501
Query: 112 GLEHSCPMPHLACSSDAVEI-IPAEGVGISQLLCKQFLVTEEDIRKQEGKVKTVRERLAI 170
+H P P LA + + + V +SQ Q + T+ ++ +Q+ + +RE +
Sbjct: 1502 --KHEAPQPPLALHPTKPPVPVISSAVLLSQKDATQLVCTDLNLLQQQARTAALRESQQV 1559
Query: 171 AL 172
AL
Sbjct: 1560 AL 1561
>gi|21361633 leucine rich repeat containing 40 [Homo sapiens]
Length = 602
Score = 27.7 bits (60), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 91 NTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACSSDAVEIIPAEGVGISQL 142
++L LV + L+ L + + + HL C+S+ +E IP E G+ L
Sbjct: 194 SSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPELAGMESL 245
>gi|118572603 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 102 GGSLLEDLASGLEHSCPMPHLACSSDAVEIIPAEGVGISQL 142
G SLL L S H+ P+PH A + + +P G SQL
Sbjct: 1087 GHSLLAGLHSSPPHAAPLPHAAVPTHIPQSLP----GASQL 1123
>gi|118572601 ubinuclein 1 [Homo sapiens]
Length = 1134
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 102 GGSLLEDLASGLEHSCPMPHLACSSDAVEIIPAEGVGISQL 142
G SLL L S H+ P+PH A + + +P G SQL
Sbjct: 1087 GHSLLAGLHSSPPHAAPLPHAAVPTHIPQSLP----GASQL 1123
>gi|31881770 ADAM metallopeptidase domain 30 preproprotein [Homo
sapiens]
Length = 790
Score = 27.3 bits (59), Expect = 8.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 7 RKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNE 49
+K R C + CK +PG + SI L F RP + GNE
Sbjct: 422 QKDRCCQSNCKLQPGANCSIGLCCHDCRF-RPSGYVCRQEGNE 463
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,805,712
Number of Sequences: 37866
Number of extensions: 347427
Number of successful extensions: 775
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 25
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.