Guide to the Human Genome
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Name: CSRNP1 Sequence: fasta or formatted (589aa) NCBI GI: 224593754
Description:

AXIN1 up-regulated 1

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         46           2
 C cysteine            4.1         24           2
 D aspartate           7.0         41           3
 E glutamate           8.5         50           7
 F phenylalanine       4.8         28           1
 G glycine             8.0         47           2
 H histidine           1.9         11           1
 I isoleucine          1.9         11           1
 K lysine              1.9         11           1
 L leucine             9.2         54           2
 M methionine          1.9         11           1
 N asparagine          2.0         12           2
 P proline             8.1         48           2
 Q glutamine           3.7         22           1
 R arginine            6.8         40           4
 S serine             13.2         78           7
 T threonine           3.6         21           1
 V valine              4.2         25           2
 W tryptophan          0.7          4           1
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AXIN1 up-regulated 1 
CSRNP3                0.221   cysteine-serine-rich nuclear protein 3 
CSRNP2                0.204   TGF-beta induced apoptosis protein 12 
SHANK1                0.016   SH3 and multiple ankyrin repeat domains 1 
WRNIP1                0.012   Werner helicase interacting protein isoform 2 
WRNIP1                0.012   Werner helicase interacting protein isoform 1 
EIF3B                 0.010   eukaryotic translation initiation factor 3, subunit ...
EIF3B                 0.010   eukaryotic translation initiation factor 3, subunit ...
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
SHROOM3               0.009   shroom family member 3 protein 
LOC100133142          0.008   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF385C               0.008   PREDICTED: zinc finger protein 385C 
ZNF385C               0.008   PREDICTED: zinc finger protein 385C 
LOC100133142          0.008   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF385C               0.008   PREDICTED: zinc finger protein 385C 
SETD1A                0.008   SET domain containing 1A 
EIF4G1                0.008   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.008   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.008   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.008   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.008   eukaryotic translation initiation factor 4 gamma, 1 ...
NRG2                  0.008   neuregulin 2 isoform 2 
NRG2                  0.008   neuregulin 2 isoform 4 
NRG2                  0.008   neuregulin 2 isoform 3 
NRG2                  0.008   neuregulin 2 isoform 1 
OLIG1                 0.008   oligodendrocyte transcription factor 1 
ARFGEF2               0.008   ADP-ribosylation factor guanine nucleotide-exchange...
SRRM2                 0.008   splicing coactivator subunit SRm300 
C1QB                  0.008   complement component 1, q subcomponent, B chain prec...
SF3B2                 0.008   splicing factor 3B subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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