Search of human proteins with 224586894

Search of human proteins with 224586894

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224586894 hypothetical protein LOC135398 [Homo sapiens]
         (244 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224586894 hypothetical protein LOC135398 [Homo sapiens]            502   e-142
gi|122937211 KIAA0368 protein [Homo sapiens]                           35   0.078
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap...    34   0.10 
gi|38348198 proline rich 20 [Homo sapiens]                             34   0.10 
gi|194353955 hypothetical protein LOC729250 [Homo sapiens]             34   0.10 
gi|194353953 hypothetical protein LOC729246 [Homo sapiens]             34   0.10 
gi|194353951 hypothetical protein LOC729240 [Homo sapiens]             34   0.10 
gi|194353949 hypothetical protein LOC729233 [Homo sapiens]             34   0.10 
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]       34   0.13 
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom...    33   0.17 
gi|21314684 single stranded DNA binding protein 3 isoform b [Hom...    33   0.17 
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom...    33   0.17 
gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo ...    33   0.30 
gi|76781485 vascular endothelial growth factor A isoform f precu...    32   0.39 
gi|76781484 vascular endothelial growth factor A isoform e precu...    32   0.39 
gi|76781483 vascular endothelial growth factor A isoform d precu...    32   0.39 
gi|76781482 vascular endothelial growth factor A isoform c precu...    32   0.39 
gi|76781481 vascular endothelial growth factor A isoform b precu...    32   0.39 
gi|76781480 vascular endothelial growth factor A isoform a precu...    32   0.39 
gi|76781487 vascular endothelial growth factor A isoform g precu...    32   0.39 
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]            32   0.50 
gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]        32   0.50 
gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]        32   0.50 
gi|57529222 basic helix-loop-helix domain containing, class B, 4...    32   0.50 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    32   0.66 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    32   0.66 
gi|239754508 PREDICTED: hypothetical protein [Homo sapiens]            32   0.66 
gi|239508747 PREDICTED: hypothetical protein [Homo sapiens]            32   0.66 
gi|112421108 capicua homolog [Homo sapiens]                            32   0.66 
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      31   0.86 

>gi|224586894 hypothetical protein LOC135398 [Homo sapiens]
          Length = 244

 Score =  502 bits (1293), Expect = e-142
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MNDPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG 60
           MNDPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG
Sbjct: 1   MNDPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG 60

Query: 61  GHEDRTADRALGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAG 120
           GHEDRTADRALGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAG
Sbjct: 61  GHEDRTADRALGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAG 120

Query: 121 GEDHGEEPNYPSVFQREKRISGRRVAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGR 180
           GEDHGEEPNYPSVFQREKRISGRRVAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGR
Sbjct: 121 GEDHGEEPNYPSVFQREKRISGRRVAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGR 180

Query: 181 MTTRTEEHFVTALTFRSSREGQPGERWGPAESRALQARTGASRVHAAGRRVSPSPGTWLE 240
           MTTRTEEHFVTALTFRSSREGQPGERWGPAESRALQARTGASRVHAAGRRVSPSPGTWLE
Sbjct: 181 MTTRTEEHFVTALTFRSSREGQPGERWGPAESRALQARTGASRVHAAGRRVSPSPGTWLE 240

Query: 241 EIKL 244
           EIKL
Sbjct: 241 EIKL 244


>gi|122937211 KIAA0368 protein [Homo sapiens]
          Length = 2017

 Score = 34.7 bits (78), Expect = 0.078
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 19  PMDSSRSLGDLGPFPREVGRGAPLAPGARNP---ATAGASRSQGGGHEDRTADRA-LGPR 74
           P+D   S G LGP P  + R AP  P  R P   A     R+Q   H DR   R+   PR
Sbjct: 89  PLDRRGSPGPLGPAPHGLRRAAPRGPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPR 148

Query: 75  A 75
           A
Sbjct: 149 A 149


>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
           sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|38348198 proline rich 20 [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|194353951 hypothetical protein LOC729240 [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|194353949 hypothetical protein LOC729233 [Homo sapiens]
          Length = 221

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 43/156 (27%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGH 62
           DP   +E  GP   A P   ++ +  + PF R+        P A      G SR  G G 
Sbjct: 32  DPEGSVEADGP---AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGR 88

Query: 63  EDRTADRALGPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAG---AEDLP 117
                 R  GPR  AG+    E  +   V   L      G +G+P   E A    +E  P
Sbjct: 89  -----GRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGP 143

Query: 118 HAGGEDHGEEPNYPSVFQREKRISGRRVAPPRDAAD 153
             G    G  P+   V Q E        AP   A D
Sbjct: 144 PPGTVQEGPGPD---VAQPELGFQEPPAAPGPQAVD 176


>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
          Length = 1006

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 9   ETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTAD 68
           E R P    NP+ SS + G+ GP               R P   G  R QG G E +   
Sbjct: 373 EARDPPKGENPLCSSEAAGETGP------------TQVRGPDALGGGRLQGKGREGKAPG 420

Query: 69  RALGPR 74
             + PR
Sbjct: 421 EGVSPR 426


>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
           sapiens]
          Length = 388

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGG 61
           DP  +       G+   M+  R +G +GP P+  G G    P +  PA  G +   G G
Sbjct: 186 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAG 244


>gi|21314684 single stranded DNA binding protein 3 isoform b [Homo
           sapiens]
          Length = 368

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGG 61
           DP  +       G+   M+  R +G +GP P+  G G    P +  PA  G +   G G
Sbjct: 166 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAG 224


>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
           sapiens]
          Length = 361

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 3   DPFARMETRGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGG 61
           DP  +       G+   M+  R +G +GP P+  G G    P +  PA  G +   G G
Sbjct: 159 DPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAG 217


>gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo
          sapiens]
          Length = 206

 Score = 32.7 bits (73), Expect = 0.30
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 9  ETRGPQGAANPMDSSRSLGDL----GPFPREVGRGAPLAPGARNPATAGASRSQG 59
          + RGPQ AA P  +  SL       GP P     G P      +PATA    S G
Sbjct: 33 DVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGG 87


>gi|76781485 vascular endothelial growth factor A isoform f
           precursor [Homo sapiens]
          Length = 327

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781484 vascular endothelial growth factor A isoform e
           precursor [Homo sapiens]
          Length = 354

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781483 vascular endothelial growth factor A isoform d
           precursor [Homo sapiens]
          Length = 371

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781482 vascular endothelial growth factor A isoform c
           precursor [Homo sapiens]
          Length = 389

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781481 vascular endothelial growth factor A isoform b
           precursor [Homo sapiens]
          Length = 395

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781480 vascular endothelial growth factor A isoform a
           precursor [Homo sapiens]
          Length = 412

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|76781487 vascular endothelial growth factor A isoform g
           precursor [Homo sapiens]
          Length = 371

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 41/149 (27%), Positives = 56/149 (37%), Gaps = 43/149 (28%)

Query: 9   ETRGPQ---GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG----- 60
           E RGPQ   GA  P          G +  E    A  AP AR P     +  +GG     
Sbjct: 103 EERGPQWRLGARKP----------GSWTGEAAVCADSAPAARAPQALARASGRGGRVARR 152

Query: 61  GHEDR----------TADRALGPRAGEELD-RESWVREKVLFLL--HPERWLGTRGDPAR 107
           G E+           +A RA   RA E ++   SWV   +  LL  H  +W         
Sbjct: 153 GAEESGPPHSPSRRGSASRAGPGRASETMNFLLSWVHWSLALLLYLHHAKW--------- 203

Query: 108 EEVAGAEDLPHAGGEDHGEEPNYPSVFQR 136
              + A  +   GG++H E   +  V+QR
Sbjct: 204 ---SQAAPMAEGGGQNHHEVVKFMDVYQR 229


>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 31  PFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTADRALGPRAGEELDRES--WVREK 88
           P P  + R AP  P  ++PA  G   + GGG     A R  G     E  R S       
Sbjct: 139 PDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGPRTPPAGRTQGQSGPRESPRASPGSAAPA 198

Query: 89  VLFLLHPERWLGTRGDPAREEVAGAE 114
           +  +  P R   TR +P   E+   E
Sbjct: 199 MASVRGPARDGATRSEPHATEIRTLE 224


>gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]
          Length = 316

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 145 VAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGRMTTRTEEHF---VTALTFRSS 198
           V   +D + P +Y L+  +  QV QE+    WA   +T      F   V ALTF ++
Sbjct: 221 VGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEAN 277


>gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]
          Length = 259

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 145 VAPPRDAADPPKYVLVRVEDYQVTQEVLQTSWAKGRMTTRTEEHF---VTALTFRSS 198
           V   +D + P +Y L+  +  QV QE+    WA   +T      F   V ALTF ++
Sbjct: 164 VGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEAN 220


>gi|57529222 basic helix-loop-helix domain containing, class B, 4
          [Homo sapiens]
          Length = 225

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 15 GAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHED 64
          GAA   +++R  G  GP     G   P AP  R PA A  S  +  G ED
Sbjct: 29 GAAREPEAARGYGTPGP-----GGDLPAAPAPRAPAQAAESSGEQSGDED 73


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 44/153 (28%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 11  RGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARN----PATAGASRSQG--GGHED 64
           RGP+GA  P     + G  GP       G    PGA+     P  AGA    G  G    
Sbjct: 383 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 442

Query: 65  RTADRALGPRAGE-ELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAGGED 123
           + A   LGP+    E     +  E+      P+   G  G       AG E    A GE 
Sbjct: 443 QGATGPLGPKGQTGEPGIAGFKGEQ-----GPKGEPGPAGPQGAPGPAGEEGKRGARGEP 497

Query: 124 HGEEPNYPSVFQREKRISGRRVAPPRDAADPPK 156
            G  P  P     E+   G R  P +D    PK
Sbjct: 498 GGVGPIGP---PGERGAPGNRGFPGQDGLAGPK 527



 Score = 27.7 bits (60), Expect = 9.5
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 12  GPQGAANPMDSSRSLGDLGPFPREVGR----GAPLAPGARNPATAGASRSQGGGHEDR 65
           GP GAA    +    G  GP P  VG     G P APGA+  A    +R   G    R
Sbjct: 336 GPAGAAGARGNDGQPGPAGP-PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 392


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 44/153 (28%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 11  RGPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARN----PATAGASRSQG--GGHED 64
           RGP+GA  P     + G  GP       G    PGA+     P  AGA    G  G    
Sbjct: 314 RGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 373

Query: 65  RTADRALGPRAGE-ELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAGGED 123
           + A   LGP+    E     +  E+      P+   G  G       AG E    A GE 
Sbjct: 374 QGATGPLGPKGQTGEPGIAGFKGEQ-----GPKGEPGPAGPQGAPGPAGEEGKRGARGEP 428

Query: 124 HGEEPNYPSVFQREKRISGRRVAPPRDAADPPK 156
            G  P  P     E+   G R  P +D    PK
Sbjct: 429 GGVGPIGP---PGERGAPGNRGFPGQDGLAGPK 458



 Score = 27.7 bits (60), Expect = 9.5
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 12  GPQGAANPMDSSRSLGDLGPFPREVGR----GAPLAPGARNPATAGASRSQGGGHEDR 65
           GP GAA    +    G  GP P  VG     G P APGA+  A    +R   G    R
Sbjct: 267 GPAGAAGARGNDGQPGPAGP-PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR 323


>gi|239754508 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 4   PFARMETRGPQGA----ANPMDSSRSLGDLGP-FPRE-----VGRGAPLAPGARNPATAG 53
           P AR++ R  +GA    +N    +      GP FPR      VG+GA   P A  P  + 
Sbjct: 95  PAARLQARRERGAGMLASNLTTRAHGTEAGGPAFPRGRAVHYVGQGASAPPAAAAPGASA 154

Query: 54  ASRSQGGGHEDRTADRALGP 73
            SR + GG   R A     P
Sbjct: 155 CSRRRNGGRRLRQASYLHSP 174


>gi|239508747 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 4   PFARMETRGPQGA----ANPMDSSRSLGDLGP-FPRE-----VGRGAPLAPGARNPATAG 53
           P AR++ R  +GA    +N    +      GP FPR      VG+GA   P A  P  + 
Sbjct: 95  PAARLQARRERGAGMLASNLTTRAHGTEAGGPAFPRGRAVHYVGQGASAPPAAAAPGASA 154

Query: 54  ASRSQGGGHEDRTADRALGP 73
            SR + GG   R A     P
Sbjct: 155 CSRRRNGGRRLRQASYLHSP 174


>gi|112421108 capicua homolog [Homo sapiens]
          Length = 1608

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 12  GPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPAT-AGASRSQGGGHEDRTADRA 70
           GP   + P  S++  G  GPF    G G  LA   R P     ASRSQ    ED T+D  
Sbjct: 382 GPASYSGPKPSTQ-YGAPGPFAAP-GEGGALAATGRPPLLPTRASRSQRAASEDMTSDEE 439

Query: 71  LGPRAGEELDRESWVREKVLFLLHPERWLGTRGD-PAREEVAGAEDLPHAGGEDHGEEPN 129
                 EE D +         ++  + +  T  D   +E V  +E    +G +  G +  
Sbjct: 440 RMVICEEEGDDD---------VIADDGFGTTDIDLKCKERVTDSESGDSSGEDPEGNKGF 490

Query: 130 YPSVFQREKRISGRRVAPPRDAADP 154
              VF    R S     PP D   P
Sbjct: 491 GRKVFSPVIRSSFTHCRPPLDPEPP 515


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 50/164 (30%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 4   PFARMETRGPQGAANPMDSSRSLGDLGP--FPREVGRGAPLAPGARN-PATAGASRSQG- 59
           P      +GP G      S    G++GP   P     GAP   GAR  P  AGA+ + G 
Sbjct: 373 PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP-----GAPGLMGARGPPGPAGANGAPGL 427

Query: 60  -GGHEDRTADRALGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPH 118
            GG  +   + A G   G   +R       V      +   G+ G+P      GA  LP 
Sbjct: 428 RGGAGEPGKNGAKG-EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEP------GANGLPG 480

Query: 119 AGGEDHG---EEPNYPSVFQREKRISGRRVAP----PRDAADPP 155
           A GE        P  P+    EK  +G R AP    PR AA  P
Sbjct: 481 AAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEP 524



 Score = 30.4 bits (67), Expect = 1.5
 Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 12  GPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGG--GHEDRTADR 69
           GP GA  P   +   G+ G   R   RG P  PG + PA         G  G + R  ++
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEK 275

Query: 70  ----ALGPRAGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAGGEDHG 125
               A G +    L  E+         + P    G RG P     AGA     A G D  
Sbjct: 276 GETGAPGLKGENGLPGENGAPGP----MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331

Query: 126 EEPNYP 131
             P  P
Sbjct: 332 PGPPGP 337



 Score = 28.5 bits (62), Expect = 5.6
 Identities = 39/141 (27%), Positives = 45/141 (31%), Gaps = 14/141 (9%)

Query: 12   GPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGARNPATAGASRSQGGGHEDRTADRAL 71
            G  G   P   S S G  GP       GAP +PG   P        + G    +    A 
Sbjct: 885  GSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP 944

Query: 72   GPR--AGEELDRESWVREKVLFLLHPERWLGTRGDPAREEVAGAEDLPHAGGEDHGEEPN 129
            GP   AG    R          L  P    G RG P  + V G    P A G      P 
Sbjct: 945  GPLGIAGITGARG---------LAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPP 995

Query: 130  YPSVFQREKRISGRRVAPPRD 150
             P   Q    ++G    P RD
Sbjct: 996  GP---QGLPGLAGTAGEPGRD 1013



 Score = 28.1 bits (61), Expect = 7.3
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 12  GPQGAANPMDSSRSLGDLGPFPREVGRGAPLAPGA 46
           GP G A P   S   G  GP   +  RG+P  PGA
Sbjct: 837 GPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGA 871


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,523,118
Number of Sequences: 37866
Number of extensions: 602579
Number of successful extensions: 2416
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 362
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.