Search of human proteins with 224586817

Search of human proteins with 224586817

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
         (1179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]      2412   0.0  
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]       2412   0.0  
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]      2379   0.0  
gi|171543895 ataxin 2 [Homo sapiens]                                   47   1e-04
gi|93141033 PAX interacting protein 1 [Homo sapiens]                   47   1e-04
gi|4504733 insulin receptor substrate 4 [Homo sapiens]                 46   2e-04
gi|90903231 huntingtin [Homo sapiens]                                  46   2e-04
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          46   2e-04
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom...    45   3e-04
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom...    45   3e-04
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom...    45   3e-04
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom...    45   3e-04
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom...    45   3e-04
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom...    45   3e-04
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho...    45   3e-04
gi|116805330 small conductance calcium-activated potassium chann...    45   4e-04
gi|21322252 androgen receptor isoform 1 [Homo sapiens]                 45   5e-04
gi|38158015 mastermind-like 3 [Homo sapiens]                           44   7e-04
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    44   0.001
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    44   0.001
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa...    44   0.001
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]          44   0.001
gi|125490370 type I hair keratin KA36 [Homo sapiens]                   43   0.002
gi|150417989 cyclin K isoform 1 [Homo sapiens]                         43   0.002
gi|226442791 runt-related transcription factor 2 isoform b [Homo...    42   0.005
gi|226442783 runt-related transcription factor 2 isoform a [Homo...    42   0.005
gi|66934969 runt-related transcription factor 2 isoform c [Homo ...    42   0.005
gi|110347429 mediator complex subunit 12 [Homo sapiens]                42   0.005
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ...    42   0.005
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ...    42   0.005

>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
          Length = 1179

 Score = 2412 bits (6252), Expect = 0.0
 Identities = 1179/1179 (100%), Positives = 1179/1179 (100%)

Query: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60
            MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG
Sbjct: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120
            QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE
Sbjct: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120

Query: 121  DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC 180
            DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC
Sbjct: 121  DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC 180

Query: 181  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 240
            KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD
Sbjct: 181  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 240

Query: 241  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 300
            CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE
Sbjct: 241  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 300

Query: 301  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 360
            LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK
Sbjct: 301  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 360

Query: 361  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 420
            LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ
Sbjct: 361  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 420

Query: 421  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 480
            GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC
Sbjct: 421  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 480

Query: 481  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 540
            QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE
Sbjct: 481  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 540

Query: 541  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 600
            DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA
Sbjct: 541  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 600

Query: 601  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 660
            YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL
Sbjct: 601  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 660

Query: 661  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 720
            QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC
Sbjct: 661  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 720

Query: 721  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 780
            LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL
Sbjct: 721  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 780

Query: 781  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 840
            STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG
Sbjct: 781  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 840

Query: 841  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 900
            NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM
Sbjct: 841  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 900

Query: 901  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 960
            LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD
Sbjct: 901  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 960

Query: 961  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1020
            SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE
Sbjct: 961  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1020

Query: 1021 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1080
            AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA
Sbjct: 1021 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1080

Query: 1081 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1140
            AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT
Sbjct: 1081 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1140

Query: 1141 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179
            SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR
Sbjct: 1141 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179


>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
          Length = 1203

 Score = 2412 bits (6252), Expect = 0.0
 Identities = 1179/1179 (100%), Positives = 1179/1179 (100%)

Query: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60
            MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG
Sbjct: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120
            QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE
Sbjct: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120

Query: 121  DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC 180
            DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC
Sbjct: 121  DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC 180

Query: 181  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 240
            KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD
Sbjct: 181  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 240

Query: 241  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 300
            CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE
Sbjct: 241  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 300

Query: 301  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 360
            LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK
Sbjct: 301  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 360

Query: 361  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 420
            LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ
Sbjct: 361  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 420

Query: 421  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 480
            GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC
Sbjct: 421  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 480

Query: 481  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 540
            QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE
Sbjct: 481  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 540

Query: 541  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 600
            DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA
Sbjct: 541  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 600

Query: 601  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 660
            YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL
Sbjct: 601  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 660

Query: 661  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 720
            QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC
Sbjct: 661  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 720

Query: 721  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 780
            LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL
Sbjct: 721  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 780

Query: 781  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 840
            STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG
Sbjct: 781  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 840

Query: 841  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 900
            NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM
Sbjct: 841  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 900

Query: 901  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 960
            LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD
Sbjct: 901  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 960

Query: 961  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1020
            SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE
Sbjct: 961  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1020

Query: 1021 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1080
            AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA
Sbjct: 1021 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1080

Query: 1081 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1140
            AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT
Sbjct: 1081 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1140

Query: 1141 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179
            SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR
Sbjct: 1141 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179


>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
          Length = 1192

 Score = 2379 bits (6166), Expect = 0.0
 Identities = 1168/1179 (99%), Positives = 1168/1179 (99%), Gaps = 11/1179 (0%)

Query: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60
            MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG
Sbjct: 1    MAACGRVRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAG 60

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120
            QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE
Sbjct: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120

Query: 121  DVTRVCPKHTWSNNLAVLECLQDVREPENEISSDCNHLLWNYKLNLTTDPKFESVAREVC 180
            DVTRVCPKHTWSNNLAVLECLQDVRE           LLWNYKLNLTTDPKFESVAREVC
Sbjct: 121  DVTRVCPKHTWSNNLAVLECLQDVRE-----------LLWNYKLNLTTDPKFESVAREVC 169

Query: 181  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 240
            KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD
Sbjct: 170  KSTITEIKECADEPVGKGYMVSCLVDHRGNITEYQCHQYITKMTAIIFSDYRLICGFMDD 229

Query: 241  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 300
            CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE
Sbjct: 230  CKNDINILKCGSIRLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAE 289

Query: 301  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 360
            LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK
Sbjct: 290  LSSDDFHLDRHLYFACRDDRERFCENTQAGEGRVYKCLFNHKFEESMSEKCREALTTRQK 349

Query: 361  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 420
            LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ
Sbjct: 350  LIAQDYKVSYSLAKSCKSDLKKYRCNVENLPRSREARLSYLLMCLESAVHRGRQVSSECQ 409

Query: 421  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 480
            GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC
Sbjct: 410  GEMLDYRRMLMEDFSLSPEIILSCRGEIEHHCSGLHRKGRTLHCLMKVVRGEKGNLGMNC 469

Query: 481  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 540
            QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE
Sbjct: 470  QQALQTLIQETDPGADYRIDRALNEACESVIQTACKHIRSGDPMILSCLMEHLYTEKMVE 529

Query: 541  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 600
            DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA
Sbjct: 530  DCEHRLLELQYFISRDWKLDPVLYRKCQGDASRLCHTHGWNETSEFMPQGAVFSCLYRHA 589

Query: 601  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 660
            YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL
Sbjct: 590  YRTEEQGRRLSRECRAEVQRILHQRAMDVKLDPALQDKCLIDLGKWCSEKTETGQELECL 649

Query: 661  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 720
            QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC
Sbjct: 650  QDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMEC 709

Query: 721  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 780
            LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL
Sbjct: 710  LIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMACKEDVLKLCPNIKKKVDVVICL 769

Query: 781  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 840
            STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG
Sbjct: 770  STTVRNDTLQEAKEHRVSLKCRRQLRVEELEMTEDIRLEPDLYEACKSDIKNFCSAVQYG 829

Query: 841  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 900
            NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM
Sbjct: 830  NAQIIECLKENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSKTM 889

Query: 901  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 960
            LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD
Sbjct: 890  LQCLKQNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGILTKAKDD 949

Query: 961  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1020
            SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE
Sbjct: 950  SELEGQVISCLKLRYADQRLSSDCEDQIRIIIQESALDYRLDPQLQLHCSDEISSLCAEE 1009

Query: 1021 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1080
            AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA
Sbjct: 1010 AAAQEQTGQVEECLKVNLLKIKTELCKKEVLNMLKESKADIFVDPVLHTACALDIKHHCA 1069

Query: 1081 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1140
            AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT
Sbjct: 1070 AITPGRGRQMSCLMEALEDKRVRLQPECKKRLNDRIEMWSYAAKVAPADGFSDLAMQVMT 1129

Query: 1141 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1179
            SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR
Sbjct: 1130 SPSKNYILSVISGSICILFLIGLMCGRITKRVTRELKDR 1168


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 23/39 (58%), Positives = 25/39 (64%)

Query: 67  PQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAG 105
           PQ  Q QQQQQQQQQQQQ Q  Q P PA     + GG+G
Sbjct: 165 PQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSG 203



 Score = 37.0 bits (84), Expect = 0.11
 Identities = 23/48 (47%), Positives = 24/48 (50%)

Query: 66  LPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLA 113
           L  S + QQQQQQQQQQQQ Q  Q       PPA       GG   LA
Sbjct: 159 LTMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLA 206


>gi|93141033 PAX interacting protein 1 [Homo sapiens]
          Length = 1069

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 37/101 (36%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 7   VRRMFRLSAALHLLLLFAAGAEKLPGQGVHSQGQGPGANFVSF-----------VGQAGG 55
           +++M R S   H+L   +A  + L  Q  HSQ     AN V F           + Q   
Sbjct: 347 IQQMNRPSNVAHILQTLSAPTKNLEQQVNHSQQGHTNANAVLFSQVKVTPETHMLQQQQQ 406

Query: 56  GGPAGQQLPQL---PQSSQLQQQQQQQQQQQQPQPPQPPFP 93
                QQ P L   PQ     QQQQQQQ  QQP P QPP P
Sbjct: 407 AQQQQQQHPVLHLQPQQIMQLQQQQQQQISQQPYPQQPPHP 447



 Score = 33.1 bits (74), Expect = 1.6
 Identities = 17/24 (70%), Positives = 17/24 (70%)

Query: 61  QQLPQLPQSSQLQQQQQQQQQQQQ 84
           QQL QL Q   L QQQQQQQ QQQ
Sbjct: 512 QQLAQLQQQHSLLQQQQQQQIQQQ 535



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 61  QQLPQLPQSSQLQQQQ-------QQQQQQQQPQPPQPPFPAGGPPA 99
           Q  P L Q+SQ  Q Q       QQQQQQQ P  PQ     G  PA
Sbjct: 552 QTAPHLSQTSQALQHQVPPQQPPQQQQQQQPPPSPQQHQLFGHDPA 597


>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
          Length = 1257

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 25  AGAEKLPGQGVHSQG-QGPGANFVSFVGQAGGGGPA----------GQQLPQLPQSSQLQ 73
           +G  + PG G  S G QGPG    S  G+  GGG            G++   L + S   
Sbjct: 558 SGGGQRPGGGHGSGGGQGPGDGHGSGGGKNSGGGKGSGSGKGSDGDGERGKSLKKRSYFG 617

Query: 74  QQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGG 109
           +  Q +QQQ  P PP PP P   P    GG G  GG
Sbjct: 618 KLTQSKQQQMPPPPPPPPPPP--PAGGTGGKGKSGG 651


>gi|90903231 huntingtin [Homo sapiens]
          Length = 3144

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 22/32 (68%), Positives = 22/32 (68%)

Query: 62 QLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFP 93
          Q  Q  Q  Q QQQQQQQQQQQQP PP PP P
Sbjct: 18 QQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPP 49



 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 22/33 (66%), Positives = 22/33 (66%)

Query: 61 QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFP 93
          QQ  Q  Q  Q QQQQQQQQQQQ P PP PP P
Sbjct: 18 QQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPP 50



 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 23/40 (57%), Positives = 24/40 (60%)

Query: 59 AGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
          A + L    Q  Q QQQQQQQQQQQQ Q  QPP P   PP
Sbjct: 10 AFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPP 49



 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 22/33 (66%), Positives = 22/33 (66%)

Query: 65 QLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGP 97
          Q  Q  Q QQQQQQQQQQQQ QPP PP P   P
Sbjct: 19 QQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPP 51



 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 22/34 (64%), Positives = 22/34 (64%)

Query: 65 QLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
          Q  Q  Q QQQQQQQQQQQQ Q P PP P   PP
Sbjct: 18 QQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPP 51



 Score = 43.5 bits (101), Expect = 0.001
 Identities = 21/33 (63%), Positives = 21/33 (63%)

Query: 61 QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFP 93
          QQ  Q  Q  Q QQQQQQQQQQ  P PP PP P
Sbjct: 19 QQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPP 51



 Score = 41.6 bits (96), Expect = 0.005
 Identities = 21/38 (55%), Positives = 21/38 (55%)

Query: 61 QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
          QQ  Q  Q  Q QQQQQQQQQ   P PP PP     PP
Sbjct: 20 QQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPP 57



 Score = 38.9 bits (89), Expect = 0.029
 Identities = 20/38 (52%), Positives = 20/38 (52%)

Query: 61 QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
          QQ  Q  Q  Q QQQQQQQQ    P PP PP     PP
Sbjct: 21 QQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPP 58



 Score = 37.4 bits (85), Expect = 0.085
 Identities = 19/40 (47%), Positives = 20/40 (50%)

Query: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPAR 100
           QQ  Q  Q  Q QQQQQQQ     P PP P  P   P A+
Sbjct: 22  QQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQ 61


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCRE 120
            Q+  Q  Q  QLQQQQQQ+ QQQQP+  Q P P G P   +  A      K  E+++   
Sbjct: 3372 QEAIQQQQQRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESP--KPEEQKNTPR 3429

Query: 121  DVTRVCPK 128
            +V+ + PK
Sbjct: 3430 EVSPLLPK 3437



 Score = 38.1 bits (87), Expect = 0.050
 Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 58   PAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
            PA   +   PQ    QQQQQQQ Q QQP PP    PA  PP
Sbjct: 3183 PAQATMAMGPQQPPQQQQQQQQPQVQQPPPP----PAAQPP 3219



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 19/84 (22%)

Query: 25   AGAEKLPGQGVHSQGQGPGANFVS-----FVGQAGGGGPAG--------------QQLPQ 65
            +G+         S G  P +N +S      VG    G P G              ++L  
Sbjct: 1658 SGSNTFTTSNPSSAGIAPSSNLLSQVPTESVGMPPLGNPIGANIASPSEPKEANRKKLAD 1717

Query: 66   LPQSSQLQQQQQQQQQQQQPQPPQ 89
            +  S Q QQQQQQQQQQQQ Q  Q
Sbjct: 1718 MIASRQQQQQQQQQQQQQQQQQQQ 1741



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 15/19 (78%), Positives = 15/19 (78%)

Query: 68   QSSQLQQQQQQQQQQQQPQ 86
            Q  Q QQQQQQQQQQQQ Q
Sbjct: 1725 QQQQQQQQQQQQQQQQQAQ 1743


>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
           sapiens]
          Length = 461

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 363 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 418



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 344 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 403

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 404 HFQSPGAAPQGGGGG 418


>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
           sapiens]
          Length = 500

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 402 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 457



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 383 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 442

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 443 HFQSPGAAPQGGGGG 457


>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
           sapiens]
          Length = 500

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 402 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 457



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 383 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 442

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 443 HFQSPGAAPQGGGGG 457


>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 418 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 473



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 458

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 459 HFQSPGAAPQGGGGG 473


>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 418 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 473



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 458

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 459 HFQSPGAAPQGGGGG 473


>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
           sapiens]
          Length = 516

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 418 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 473



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 399 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 458

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 459 HFQSPGAAPQGGGGG 473


>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
           sapiens]
          Length = 577

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/56 (48%), Positives = 28/56 (50%)

Query: 52  QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAG 107
           QA     A  Q     Q+SQ  QQQQQQQQQQQ Q  QPP     P A   G G G
Sbjct: 479 QAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPPHFQSPGAAPQGGGGG 534



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQ----QQQPQPPQP 90
           +  Q Q   A       QA     A  Q     Q+   Q  QQQQQQ    QQQ Q P P
Sbjct: 460 LQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQASQASQQQQQQQQQQQQQQQQPPP 519

Query: 91  PFPAGGPPARRGGAG 105
            F + G   + GG G
Sbjct: 520 HFQSPGAAPQGGGGG 534


>gi|116805330 small conductance calcium-activated potassium
          channel protein 3 isoform a [Homo sapiens]
          Length = 731

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 23/33 (69%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 58 PAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQP 90
          P G  L   PQ  QLQQQQQQQQQQQQ QPP P
Sbjct: 54 PLGPSLQ--PQPPQLQQQQQQQQQQQQQQPPHP 84



 Score = 43.5 bits (101), Expect = 0.001
 Identities = 19/25 (76%), Positives = 19/25 (76%)

Query: 67 PQSSQLQQQQQQQQQQQQPQPPQPP 91
          P S   QQQQQQQQQQQQP PP PP
Sbjct: 24 PSSGDEQQQQQQQQQQQQPPPPAPP 48



 Score = 41.2 bits (95), Expect = 0.006
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 64  PQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCREDVT 123
           P+ P  S   +QQQQQQQQQQ QPP PP P   P    G +      +L +++  ++   
Sbjct: 19  PKCPCPSSGDEQQQQQQQQQQQQPP-PPAPPAAPQQPLGPSLQPQPPQLQQQQQQQQQQQ 77

Query: 124 RVCPKHTWS 132
           +  P H  S
Sbjct: 78  QQQPPHPLS 86



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 57  GPAGQQLPQLPQSSQLQQQQQQQQQ---------QQQPQPPQPPFPAGGPPARR 101
           GP+ Q  P   Q  Q QQQQQQQQQ         Q Q QP  P      P A R
Sbjct: 56  GPSLQPQPPQLQQQQQQQQQQQQQQPPHPLSQLAQLQSQPVHPGLLHSSPTAFR 109



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 21/40 (52%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 58 PAGQQLPQLPQSSQLQQQQ---QQQQQQ-QQPQPPQPPFP 93
          PA    PQ P    LQ Q    QQQQQQ QQ Q  QPP P
Sbjct: 45 PAPPAAPQQPLGPSLQPQPPQLQQQQQQQQQQQQQQPPHP 84


>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
          Length = 920

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 33  QGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPF 92
           Q V    Q PG        +A    P G  L  L Q  Q QQQQQQQQQQQQ Q  Q   
Sbjct: 28  QSVREVIQNPGPRHP----EAASAAPPGASLLLLQQQQQQQQQQQQQQQQQQQQQQQETS 83

Query: 93  PA---------GGPPARRGGAGAGGGWKLAEEE 116
           P          G P A R G     G+ + +EE
Sbjct: 84  PRQQQQQQGEDGSPQAHRRGP---TGYLVLDEE 113


>gi|38158015 mastermind-like 3 [Homo sapiens]
          Length = 1133

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 20/31 (64%), Positives = 22/31 (70%)

Query: 63  LPQLPQSSQLQQQQQQQQQQQQPQPPQPPFP 93
           +P + Q  Q QQQQQQQQQQQQP PPQ   P
Sbjct: 625 MPYIQQQQQQQQQQQQQQQQQQPPPPQLQAP 655



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 19/28 (67%), Positives = 20/28 (71%)

Query: 64  PQLPQSSQLQQQQQQQQQQQQPQPPQPP 91
           P +P   Q QQQQQQQQQQQQ Q P PP
Sbjct: 623 PLMPYIQQQQQQQQQQQQQQQQQQPPPP 650



 Score = 39.3 bits (90), Expect = 0.022
 Identities = 26/70 (37%), Positives = 28/70 (40%)

Query: 35  VHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPA 94
           V S    P         Q        QQ  Q  Q  Q QQQQQQQQQQQQ       +  
Sbjct: 457 VPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWSP 516

Query: 95  GGPPARRGGA 104
            GPP+   GA
Sbjct: 517 LGPPSSPYGA 526



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 20/44 (45%), Positives = 22/44 (50%)

Query: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGA 104
           Q+  Q  Q  Q QQQQQQQQQQQ         P G P +  G A
Sbjct: 484 QKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWSPLGPPSSPYGAA 527


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 23/39 (58%), Positives = 23/39 (58%)

Query: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPA 99
           QQ  Q  Q  Q QQQQQQQQQQ Q QPPQP       PA
Sbjct: 217 QQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPA 255



 Score = 40.8 bits (94), Expect = 0.008
 Identities = 20/28 (71%), Positives = 20/28 (71%)

Query: 63  LPQLPQSSQLQQQQQQQQQQQQPQPPQP 90
           LP L Q  Q QQQQQQQQQQQQ Q  QP
Sbjct: 212 LPGLQQQQQQQQQQQQQQQQQQQQQQQP 239



 Score = 40.8 bits (94), Expect = 0.008
 Identities = 20/29 (68%), Positives = 20/29 (68%)

Query: 63  LPQLPQSSQLQQQQQQQQQQQQPQPPQPP 91
           L Q  Q  Q QQQQQQQQQQQQ QP Q P
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243



 Score = 38.9 bits (89), Expect = 0.029
 Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 11/50 (22%)

Query: 60  GQQLPQ-----------LPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
           GQ LP+           LP   Q QQQQQQQQQQQQ Q  Q   P   PP
Sbjct: 195 GQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPP 244



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 61  QQLPQLPQSSQLQQQQQQQ----------QQQQQPQPPQPPFPAGGPPARRG 102
           QQ  Q  Q  Q QQQQQQQ          QQQQQP       P+G  P   G
Sbjct: 220 QQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSG 271


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 23/39 (58%), Positives = 23/39 (58%)

Query: 61  QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPA 99
           QQ  Q  Q  Q QQQQQQQQQQ Q QPPQP       PA
Sbjct: 217 QQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPA 255



 Score = 40.8 bits (94), Expect = 0.008
 Identities = 20/28 (71%), Positives = 20/28 (71%)

Query: 63  LPQLPQSSQLQQQQQQQQQQQQPQPPQP 90
           LP L Q  Q QQQQQQQQQQQQ Q  QP
Sbjct: 212 LPGLQQQQQQQQQQQQQQQQQQQQQQQP 239



 Score = 40.8 bits (94), Expect = 0.008
 Identities = 20/29 (68%), Positives = 20/29 (68%)

Query: 63  LPQLPQSSQLQQQQQQQQQQQQPQPPQPP 91
           L Q  Q  Q QQQQQQQQQQQQ QP Q P
Sbjct: 215 LQQQQQQQQQQQQQQQQQQQQQQQPQQQP 243



 Score = 38.9 bits (89), Expect = 0.029
 Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 11/50 (22%)

Query: 60  GQQLPQ-----------LPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPP 98
           GQ LP+           LP   Q QQQQQQQQQQQQ Q  Q   P   PP
Sbjct: 195 GQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPP 244



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 61  QQLPQLPQSSQLQQQQQQQ----------QQQQQPQPPQPPFPAGGPPARRG 102
           QQ  Q  Q  Q QQQQQQQ          QQQQQP       P+G  P   G
Sbjct: 220 QQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSG 271


>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
           sapiens]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 33/69 (47%), Positives = 34/69 (49%), Gaps = 10/69 (14%)

Query: 48  SFVGQAGGGGP------AGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAG----GP 97
           S V Q GG G       A QQ  Q  Q  Q QQQQQQQQQQQQ +PP     A     GP
Sbjct: 106 SVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHPGP 165

Query: 98  PARRGGAGA 106
            A R  A A
Sbjct: 166 GAWRSAAAA 174


>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
          Length = 581

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 47  VSFVGQAGGGG------PAGQQLPQLPQSSQ----LQQQQQQQQQQQQPQPPQPPFPAGG 96
           +S  G+ GGGG      P G +LP +P   Q    L +  + +QQQQQ Q P PP P  G
Sbjct: 137 LSSPGRGGGGGGRLLLQPPGPELPPVPFPLQDLVPLGRLSRGEQQQQQQQQPPPPPPPPG 196

Query: 97  PPARRGGAGAGGGWKL 112
           P     G    G +K+
Sbjct: 197 PLRPLAGPSRKGSFKI 212


>gi|125490370 type I hair keratin KA36 [Homo sapiens]
          Length = 431

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 60/305 (19%), Positives = 128/305 (41%), Gaps = 39/305 (12%)

Query: 639 CLIDLGKWCSEKTETGQELECLQDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEP 698
           CL+    WC +   T  E E +Q  L+D +    + V +L E  +E   +E+ +   CE 
Sbjct: 72  CLVGNCAWCEDGVFTSNEKETMQ-FLNDRLASYLEKVRSLEETNAE---LESRIQEQCEQ 127

Query: 699 IIQNFCHDVADNQIDSGDLMECLIQNKHQKDMNEKCAIGVTHFQLVQMKDFRFSYKFKMA 758
            I   C D         DL + ++  K +   N + A+ + + +L    DF+  Y+ +++
Sbjct: 128 DIPMVCPDYQRYFNTIEDLQQKILCTKAE---NSRLAVQLDNCKLA-TDDFKSKYESELS 183

Query: 759 CKE----DVLKLCPNIKKKVDVVICLS------TTVRNDTLQEAKEHRVSLKCRRQLRVE 808
            ++    D+  L   ++   ++ +C S       +++ D L   K H   +   R+   +
Sbjct: 184 LRQLLEADISSLHGILE---ELTLCKSDLEAHVESLKEDLLCLKKNHEEEVNLLREQLGD 240

Query: 809 ELEMTEDIRLEPDLYEACKSDIKNFCSAVQYGNAQ------IIECLKENKKQLSTR---- 858
            L +  D     DL      +++  C  V   N +       ++  + N++QLS+     
Sbjct: 241 RLSVELDTAPTLDLNRVL-DEMRCQCETVLANNRREAEEWLAVQTEELNQQQLSSAEQLQ 299

Query: 859 -CHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPEADSK-----TMLQCLKQNKNSEL 912
            C  ++ +L+ T     E++    +   + ++    E +++       +QCL  N  ++L
Sbjct: 300 GCQMEILELKRTASA-LEIELQAQQSLTESLECTVAETEAQYSSQLAQIQCLIDNLENQL 358

Query: 913 MDPKC 917
            + +C
Sbjct: 359 AEIRC 363



 Score = 35.8 bits (81), Expect = 0.25
 Identities = 64/298 (21%), Positives = 118/298 (39%), Gaps = 54/298 (18%)

Query: 849  KENKKQLSTRCHQKVFKLQETEMMDPELDYTLMRVCKQMIKRFCPE--------ADSKTM 900
            KE  + L+ R    + K++  E  + EL+  +   C+Q I   CP+         D +  
Sbjct: 90   KETMQFLNDRLASYLEKVRSLEETNAELESRIQEQCEQDIPMVCPDYQRYFNTIEDLQQK 149

Query: 901  LQCLK-QNKNSELMDPKCKQMITKRQITQNTDYRLNPMLRKACKADIPKFCHGI---LTK 956
            + C K +N    +    CK      +    + Y     LR+  +ADI    HGI   LT 
Sbjct: 150  ILCTKAENSRLAVQLDNCKLATDDFK----SKYESELSLRQLLEADISSL-HGILEELTL 204

Query: 957  AKDDSELEGQVIS----CLKLRYADQRLSSDCEDQIRIIIQE--SALDYRLD--PQLQLH 1008
             K D E   + +     CLK  +         E+++ ++ ++    L   LD  P L L+
Sbjct: 205  CKSDLEAHVESLKEDLLCLKKNH---------EEEVNLLREQLGDRLSVELDTAPTLDLN 255

Query: 1009 -CSDEISSLCAEEAAAQEQTGQVEECLKVNLLKIKTEL---------CKKEVLNMLKESK 1058
               DE+   C  E        + EE L V   ++  +          C+ E+L + + + 
Sbjct: 256  RVLDEMRCQC--ETVLANNRREAEEWLAVQTEELNQQQLSSAEQLQGCQMEILELKRTAS 313

Query: 1059 ADIFVDPVLHTACALDIKHHCA-----AITPGRGRQMSCLMEALEDKRVRLQPECKKR 1111
            A   ++  L    +L     C      A    +  Q+ CL++ LE++   ++ + +++
Sbjct: 314  A---LEIELQAQQSLTESLECTVAETEAQYSSQLAQIQCLIDNLENQLAEIRCDLERQ 368


>gi|150417989 cyclin K isoform 1 [Homo sapiens]
          Length = 580

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 24/72 (33%), Positives = 32/72 (44%)

Query: 19  LLLLFAAGAEKLPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQ 78
           +L L++ G +++P    H   Q P       V Q     P+    P  PQ    QQ  QQ
Sbjct: 254 ILDLYSQGKQQMPHHTPHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQKDPQQPAQQ 313

Query: 79  QQQQQQPQPPQP 90
           QQ  QQP+ P P
Sbjct: 314 QQPAQQPKKPSP 325


>gi|226442791 runt-related transcription factor 2 isoform b [Homo
           sapiens]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 68  QSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCREDVTRVCP 127
           Q  Q QQQQQQQQQQQQ Q  Q    A    A    A A               V R+ P
Sbjct: 49  QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA-------------VPRLRP 95

Query: 128 KHTWSNNLAVLECLQDVREPENEISSD-----CNHLLWNYKLNLTTDPKFESVA-REVCK 181
            H   +N  ++E + D   P   + +D     C+ L  +++ N T    F+ VA  EV  
Sbjct: 96  PH---DNRTMVEIIAD--HPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPD 150

Query: 182 STITEIKECADE 193
            T+  +    DE
Sbjct: 151 GTVVTVMAGNDE 162


>gi|226442783 runt-related transcription factor 2 isoform a [Homo
           sapiens]
          Length = 521

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 68  QSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCREDVTRVCP 127
           Q  Q QQQQQQQQQQQQ Q  Q    A    A    A A               V R+ P
Sbjct: 49  QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA-------------VPRLRP 95

Query: 128 KHTWSNNLAVLECLQDVREPENEISSD-----CNHLLWNYKLNLTTDPKFESVA-REVCK 181
            H   +N  ++E + D   P   + +D     C+ L  +++ N T    F+ VA  EV  
Sbjct: 96  PH---DNRTMVEIIAD--HPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPD 150

Query: 182 STITEIKECADE 193
            T+  +    DE
Sbjct: 151 GTVVTVMAGNDE 162


>gi|66934969 runt-related transcription factor 2 isoform c [Homo
           sapiens]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 68  QSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGGAGAGGGWKLAEEESCREDVTRVCP 127
           Q  Q QQQQQQQQQQQQ Q  Q    A    A    A A               V R+ P
Sbjct: 35  QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAA-------------VPRLRP 81

Query: 128 KHTWSNNLAVLECLQDVREPENEISSD-----CNHLLWNYKLNLTTDPKFESVA-REVCK 181
            H   +N  ++E + D   P   + +D     C+ L  +++ N T    F+ VA  EV  
Sbjct: 82  PH---DNRTMVEIIAD--HPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPD 136

Query: 182 STITEIKECADE 193
            T+  +    DE
Sbjct: 137 GTVVTVMAGNDE 148


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 22/43 (51%), Positives = 23/43 (53%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQPPFPAGGPPARRGG 103
            QQ  Q  Q  Q QQQQQ QQQQQQ   P  P P   P  +R G
Sbjct: 2099 QQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQG 2141



 Score = 37.7 bits (86), Expect = 0.065
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 63   LPQLPQSSQLQQQQQQQQQQQQPQPPQPPF 92
            LP+  Q  Q QQQQQQQQQQQQ Q  Q  +
Sbjct: 2048 LPEQQQQQQQQQQQQQQQQQQQQQQQQQQY 2077



 Score = 36.2 bits (82), Expect = 0.19
 Identities = 18/29 (62%), Positives = 20/29 (68%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
            QQ  Q+ +  Q QQQQQQQQQQQQ Q  Q
Sbjct: 2082 QQQQQILRQQQQQQQQQQQQQQQQQQQQQ 2110



 Score = 35.8 bits (81), Expect = 0.25
 Identities = 18/27 (66%), Positives = 18/27 (66%)

Query: 58   PAGQQLPQLPQSSQLQQQQQQQQQQQQ 84
            P  QQ  Q  Q  Q QQQQQQQQQQQQ
Sbjct: 2049 PEQQQQQQQQQQQQQQQQQQQQQQQQQ 2075



 Score = 35.8 bits (81), Expect = 0.25
 Identities = 18/26 (69%), Positives = 18/26 (69%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQ 86
            QQ  Q  Q  Q QQQQQQQQQQQQ Q
Sbjct: 2051 QQQQQQQQQQQQQQQQQQQQQQQQQQ 2076



 Score = 35.8 bits (81), Expect = 0.25
 Identities = 19/29 (65%), Positives = 19/29 (65%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
            QQ   L Q  Q QQQQQQQQQQQQ Q  Q
Sbjct: 2083 QQQQILRQQQQQQQQQQQQQQQQQQQQQQ 2111



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 21/38 (55%), Positives = 21/38 (55%)

Query: 52   QAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
            QAG    A     Q  Q  Q QQQQQQQQQQQQ Q  Q
Sbjct: 2039 QAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQ 2076



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query: 56   GGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
            G  AG +   +    Q QQQQQQQQQQQQ Q  Q
Sbjct: 2037 GVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQ 2070



 Score = 33.1 bits (74), Expect = 1.6
 Identities = 18/29 (62%), Positives = 18/29 (62%)

Query: 61   QQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
            QQ  Q     Q QQQQQQQQQQQQ Q  Q
Sbjct: 2081 QQQQQQILRQQQQQQQQQQQQQQQQQQQQ 2109


>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
           [Homo sapiens]
          Length = 1125

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 30/70 (42%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 42  PGANFVSFVGQAGGGGPAG-----------QQLPQLPQSSQLQQ--QQQQQQQQQQPQPP 88
           P   FV   G  G GGP             QQ PQ PQ     Q  QQ QQQQQQQP P 
Sbjct: 889 PHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPS 948

Query: 89  QPPFPAGGPP 98
           Q P P    P
Sbjct: 949 QQPPPTQQQP 958



 Score = 37.4 bits (85), Expect = 0.085
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 30  LPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
           +PG G    G GPG        Q     P  Q  PQ PQ  Q QQQQQ    QQ P   Q
Sbjct: 899 MPGLG--GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQ 956

Query: 90  PP 91
            P
Sbjct: 957 QP 958


>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
           [Homo sapiens]
          Length = 1132

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 30/70 (42%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 42  PGANFVSFVGQAGGGGPAG-----------QQLPQLPQSSQLQQ--QQQQQQQQQQPQPP 88
           P   FV   G  G GGP             QQ PQ PQ     Q  QQ QQQQQQQP P 
Sbjct: 896 PHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPS 955

Query: 89  QPPFPAGGPP 98
           Q P P    P
Sbjct: 956 QQPPPTQQQP 965



 Score = 37.4 bits (85), Expect = 0.085
 Identities = 25/62 (40%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 30  LPGQGVHSQGQGPGANFVSFVGQAGGGGPAGQQLPQLPQSSQLQQQQQQQQQQQQPQPPQ 89
           +PG G    G GPG        Q     P  Q  PQ PQ  Q QQQQQ    QQ P   Q
Sbjct: 906 MPGLG--GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQPPPTQQ 963

Query: 90  PP 91
            P
Sbjct: 964 QP 965


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,932,063
Number of Sequences: 37866
Number of extensions: 2414894
Number of successful extensions: 21125
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 14373
Number of HSP's gapped (non-prelim): 3869
length of query: 1179
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1066
effective length of database: 13,968,660
effective search space: 14890591560
effective search space used: 14890591560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.