Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 223633967

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223633967 hypothetical protein LOC400696 [Homo sapiens]
         (151 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223633967 hypothetical protein LOC400696 [Homo sapiens]            325   1e-89
gi|9910348 lectin, galactoside-binding, soluble, 14 isoform 1 [H...   140   3e-34
gi|45439325 lectin, galactoside-binding, soluble, 14 isoform 2 [...   134   2e-32
gi|7019497 galectin-13 [Homo sapiens]                                 130   4e-31
gi|20357559 Charcot-Leyden crystal protein [Homo sapiens]             127   3e-30
gi|29741322 PREDICTED: similar to lectin, galactoside-binding, s...   120   3e-28
gi|169213906 PREDICTED: similar to lectin, galactoside-binding, ...   120   4e-28
gi|89057453 PREDICTED: similar to lectin, galactoside-binding, s...   120   4e-28
gi|169213288 PREDICTED: similar to lectin, galactoside-binding, ...   118   2e-27
gi|169213908 PREDICTED: similar to lectin, galactoside-binding, ...   117   3e-27
gi|169214331 PREDICTED: similar to lectin, galactoside-binding, ...   117   3e-27
gi|102469694 galectin-9 isoform short [Homo sapiens]                   54   7e-08
gi|6806890 galectin-9 isoform long [Homo sapiens]                      54   7e-08
gi|111494239 galectin 9 like [Homo sapiens]                            52   1e-07
gi|111494237 galectin-9 like [Homo sapiens]                            52   2e-07
gi|42544193 galectin-8 isoform a [Homo sapiens]                        49   1e-06
gi|42544191 galectin-8 isoform b [Homo sapiens]                        49   1e-06
gi|42544187 galectin-8 isoform b [Homo sapiens]                        49   1e-06
gi|42544185 galectin-8 isoform a [Homo sapiens]                        49   1e-06
gi|5453712 galectin-4 [Homo sapiens]                                   49   2e-06
gi|115430223 galectin 3 [Homo sapiens]                                 39   0.002
gi|4504985 galectin-7 [Homo sapiens]                                   37   0.008
gi|109948279 galectin-7B [Homo sapiens]                                37   0.008
gi|4504981 galectin-1 [Homo sapiens]                                   31   0.35 
gi|8923769 histone deacetylase 8 [Homo sapiens]                        29   1.3  
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s...    29   1.3  
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]      28   3.0  
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa...    28   3.9  
gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]               27   6.6  
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      27   6.6  

>gi|223633967 hypothetical protein LOC400696 [Homo sapiens]
          Length = 151

 Score =  325 bits (832), Expect = 1e-89
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH
Sbjct: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPFRIISYVLQHLFCSSSLK 120
           WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPFRIISYVLQHLFCSSSLK
Sbjct: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPFRIISYVLQHLFCSSSLK 120

Query: 121 TFEFPSLPPPLHLWATPRRNWAISSHSEWEL 151
           TFEFPSLPPPLHLWATPRRNWAISSHSEWEL
Sbjct: 121 TFEFPSLPPPLHLWATPRRNWAISSHSEWEL 151


>gi|9910348 lectin, galactoside-binding, soluble, 14 isoform 1 [Homo
           sapiens]
          Length = 139

 Score =  140 bits (354), Expect = 3e-34
 Identities = 73/127 (57%), Positives = 89/127 (70%), Gaps = 6/127 (4%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MSSL VP+T PVSL  GSCVIITGTPI+ FV DPQL+V+F+T M EDSDIAF FR++FGH
Sbjct: 1   MSSLPVPYTLPVSLPVGSCVIITGTPILTFVKDPQLEVNFYTGMDEDSDIAFQFRLHFGH 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPF----RIISYVLQHLFCS 116
             +MNS V G W+YE  C+ +PF+DGKPF LCI V   EY+      RI  Y   H F  
Sbjct: 61  PAIMNSCVFGIWRYEEKCYYLPFEDGKPFELCIYVRHKEYKVMVNGQRI--YNFAHRFPP 118

Query: 117 SSLKTFE 123
           +S+K  +
Sbjct: 119 ASVKMLQ 125


>gi|45439325 lectin, galactoside-binding, soluble, 14 isoform 2
           [Homo sapiens]
          Length = 168

 Score =  134 bits (338), Expect = 2e-32
 Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 6/122 (4%)

Query: 6   VPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGHWVVMN 65
           VP+T PVSL  GSCVIITGTPI+ FV DPQL+V+F+T M EDSDIAF FR++FGH  +MN
Sbjct: 35  VPYTLPVSLPVGSCVIITGTPILTFVKDPQLEVNFYTGMDEDSDIAFQFRLHFGHPAIMN 94

Query: 66  SRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPF----RIISYVLQHLFCSSSLKT 121
           S V G W+YE  C+ +PF+DGKPF LCI V   EY+      RI  Y   H F  +S+K 
Sbjct: 95  SCVFGIWRYEEKCYYLPFEDGKPFELCIYVRHKEYKVMVNGQRI--YNFAHRFPPASVKM 152

Query: 122 FE 123
            +
Sbjct: 153 LQ 154


>gi|7019497 galectin-13 [Homo sapiens]
          Length = 139

 Score =  130 bits (327), Expect = 4e-31
 Identities = 65/101 (64%), Positives = 75/101 (74%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MSSL VP+  PVSLS GSCVII GTPI  F+ DPQLQVDF+T+M EDSDIAF FRV+FG+
Sbjct: 1   MSSLPVPYKLPVSLSVGSCVIIKGTPIHSFINDPQLQVDFYTDMDEDSDIAFRFRVHFGN 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
            VVMN R  G W  E T   +PF+DGK F LCI V  +EY+
Sbjct: 61  HVVMNRREFGIWMLEETTDYVPFEDGKQFELCIYVHYNEYE 101


>gi|20357559 Charcot-Leyden crystal protein [Homo sapiens]
          Length = 142

 Score =  127 bits (320), Expect = 3e-30
 Identities = 64/101 (63%), Positives = 74/101 (73%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MS L VP+T   SLSTGS V I G P+  F+ +P LQVDFHTEMKE+SDI FHF+V FG 
Sbjct: 1   MSLLPVPYTEAASLSTGSTVTIKGRPLACFLNEPYLQVDFHTEMKEESDIVFHFQVCFGR 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
            VVMNSR  GAW+ +V   NMPFQDG+ F L ISVL D+YQ
Sbjct: 61  RVVMNSREYGAWKQQVESKNMPFQDGQEFELSISVLPDKYQ 101


>gi|29741322 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 isoform 1 [Homo sapiens]
          Length = 142

 Score =  120 bits (302), Expect = 3e-28
 Identities = 61/101 (60%), Positives = 72/101 (71%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MS L VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G 
Sbjct: 1   MSFLTVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGR 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
            VVMNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 61  RVVMNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCLNEYE 101


>gi|169213906 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 isoform 2 [Homo sapiens]
          Length = 142

 Score =  120 bits (301), Expect = 4e-28
 Identities = 61/101 (60%), Positives = 72/101 (71%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MS L VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G 
Sbjct: 1   MSFLTVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGR 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
            VVMNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 61  RVVMNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCHNEYE 101


>gi|89057453 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 isoform 1 [Homo sapiens]
          Length = 142

 Score =  120 bits (301), Expect = 4e-28
 Identities = 61/101 (60%), Positives = 72/101 (71%)

Query: 1   MSSLKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGH 60
           MS L VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G 
Sbjct: 1   MSFLTVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGR 60

Query: 61  WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
            VVMNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 61  RVVMNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCHNEYE 101


>gi|169213288 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 [Homo sapiens]
          Length = 172

 Score =  118 bits (295), Expect = 2e-27
 Identities = 58/98 (59%), Positives = 71/98 (72%)

Query: 4   LKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGHWVV 63
           ++VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G  VV
Sbjct: 34  VRVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGRRVV 93

Query: 64  MNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           MNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 94  MNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCLNEYE 131


>gi|169213908 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 isoform 1 [Homo sapiens]
          Length = 172

 Score =  117 bits (294), Expect = 3e-27
 Identities = 58/98 (59%), Positives = 71/98 (72%)

Query: 4   LKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGHWVV 63
           ++VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G  VV
Sbjct: 34  VRVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGRRVV 93

Query: 64  MNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           MNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 94  MNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCHNEYE 131


>gi|169214331 PREDICTED: similar to lectin, galactoside-binding,
           soluble, 14 [Homo sapiens]
          Length = 172

 Score =  117 bits (294), Expect = 3e-27
 Identities = 58/98 (59%), Positives = 71/98 (72%)

Query: 4   LKVPHTRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGHWVV 63
           ++VP+  PVSLS GSCVII GT I   + +PQLQVDF+TEM EDS+IAFH RV+ G  VV
Sbjct: 34  VRVPYKLPVSLSVGSCVIIKGTLIDSSINEPQLQVDFYTEMNEDSEIAFHLRVHLGRRVV 93

Query: 64  MNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           MNSR  G W  E   H +PF+DGKPF+L I V  +EY+
Sbjct: 94  MNSREFGIWMLEENLHYVPFEDGKPFDLRIYVCHNEYE 131


>gi|102469694 galectin-9 isoform short [Homo sapiens]
          Length = 323

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 14  LSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYF--GHWVVMNSRVNGA 71
           L  G  + + GT +       +  V+F T     +DIAFHF   F  G +VV N+R NG+
Sbjct: 25  LQDGLQITVNGTVLSS--SGTRFAVNFQTGFS-GNDIAFHFNPRFEDGGYVVCNTRQNGS 81

Query: 72  WQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           W  E    +MPFQ G PF+LC  V + +++
Sbjct: 82  WGPEERKTHMPFQKGMPFDLCFLVQSSDFK 111


>gi|6806890 galectin-9 isoform long [Homo sapiens]
          Length = 355

 Score = 53.5 bits (127), Expect = 7e-08
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 14  LSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYF--GHWVVMNSRVNGA 71
           L  G  + + GT +       +  V+F T     +DIAFHF   F  G +VV N+R NG+
Sbjct: 25  LQDGLQITVNGTVLSS--SGTRFAVNFQTGFS-GNDIAFHFNPRFEDGGYVVCNTRQNGS 81

Query: 72  WQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           W  E    +MPFQ G PF+LC  V + +++
Sbjct: 82  WGPEERKTHMPFQKGMPFDLCFLVQSSDFK 111


>gi|111494239 galectin 9 like [Homo sapiens]
          Length = 356

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 38  VDFHTEMKEDSDIAFHFRVYF--GHWVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISV 95
           VDF T     +DIAFHF   F  G +VV N+R  G W  E    +MPFQ G PF+LC  V
Sbjct: 47  VDFQTGFS-GNDIAFHFNPRFEDGGYVVCNTRQKGTWGPEERKMHMPFQKGMPFDLCFLV 105

Query: 96  LADEYQ 101
            + +++
Sbjct: 106 QSSDFK 111


>gi|111494237 galectin-9 like [Homo sapiens]
          Length = 355

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 38  VDFHTEMKEDSDIAFHFRVYF--GHWVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISV 95
           VDF T     +DIAFHF   F  G +VV N+R  G W  E    +MPFQ G PF+LC  V
Sbjct: 47  VDFQTGFS-GNDIAFHFNPRFEDGGYVVCNTRQKGRWGPEERKMHMPFQKGMPFDLCFLV 105

Query: 96  LADEYQ 101
            + +++
Sbjct: 106 QSSDFK 111


>gi|42544193 galectin-8 isoform a [Homo sapiens]
          Length = 359

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 9   TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFH--TEMKEDSDIAFHFRVYF--GHWVVM 64
           T P  L  G+ ++I G   +P   D + QVD    + MK  +D+AFHF   F     +V 
Sbjct: 22  TIPDQLDPGTLIVIRGH--VPSDAD-RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVC 78

Query: 65  NSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           N+ +N  W  E   ++ PF+  K F + I VL D++Q
Sbjct: 79  NTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQ 115


>gi|42544191 galectin-8 isoform b [Homo sapiens]
          Length = 317

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 9   TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFH--TEMKEDSDIAFHFRVYF--GHWVVM 64
           T P  L  G+ ++I G   +P   D + QVD    + MK  +D+AFHF   F     +V 
Sbjct: 22  TIPDQLDPGTLIVIRGH--VPSDAD-RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVC 78

Query: 65  NSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           N+ +N  W  E   ++ PF+  K F + I VL D++Q
Sbjct: 79  NTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQ 115


>gi|42544187 galectin-8 isoform b [Homo sapiens]
          Length = 317

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 9   TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFH--TEMKEDSDIAFHFRVYF--GHWVVM 64
           T P  L  G+ ++I G   +P   D + QVD    + MK  +D+AFHF   F     +V 
Sbjct: 22  TIPDQLDPGTLIVIRGH--VPSDAD-RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVC 78

Query: 65  NSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           N+ +N  W  E   ++ PF+  K F + I VL D++Q
Sbjct: 79  NTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQ 115


>gi|42544185 galectin-8 isoform a [Homo sapiens]
          Length = 359

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 9   TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFH--TEMKEDSDIAFHFRVYF--GHWVVM 64
           T P  L  G+ ++I G   +P   D + QVD    + MK  +D+AFHF   F     +V 
Sbjct: 22  TIPDQLDPGTLIVIRGH--VPSDAD-RFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVC 78

Query: 65  NSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           N+ +N  W  E   ++ PF+  K F + I VL D++Q
Sbjct: 79  NTLINEKWGREEITYDTPFKREKSFEIVIMVLKDKFQ 115


>gi|5453712 galectin-4 [Homo sapiens]
          Length = 323

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 6   VPHTRPV--SLSTGSCVIITGTPIIPFVMDPQLQVDFHTEMKEDSDIAFHFRVYFGHW-- 61
           +P+ +P+   L+ G  V I G   +      +  V+F       SD+AFHF   F  W  
Sbjct: 17  LPYYQPIPGGLNVGMSVYIQG---VASEHMKRFFVNFVVGQDPGSDVAFHFNPRFDGWDK 73

Query: 62  VVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
           VV N+   G W  E    +MPF+ G  F L   VLA+ Y+
Sbjct: 74  VVFNTLQGGKWGSEERKRSMPFKKGAAFELVFIVLAEHYK 113


>gi|115430223 galectin 3 [Homo sapiens]
          Length = 250

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 43  EMKEDSDIAFHFRVYFGH----WVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLAD 98
           + +  +D+AFHF   F       +V N++++  W  E      PF+ GKPF + + V  D
Sbjct: 148 DFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPD 207

Query: 99  EYQPFRIISYVLQH 112
            ++     +++LQ+
Sbjct: 208 HFKVAVNDAHLLQY 221


>gi|4504985 galectin-7 [Homo sapiens]
          Length = 136

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 6   VPH--TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEM----KEDSDIAFHFRVYFG 59
           VPH  + P  +  G+ + I G       + P     FH  +    ++ SD A HF     
Sbjct: 4   VPHKSSLPEGIRPGTVLRIRG-------LVPPNASRFHVNLLCGEEQGSDAALHFNPRLD 56

Query: 60  -HWVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
              VV NS+  G+W  E     +PFQ G+PF + I    D ++
Sbjct: 57  TSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFK 99


>gi|109948279 galectin-7B [Homo sapiens]
          Length = 136

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 6   VPH--TRPVSLSTGSCVIITGTPIIPFVMDPQLQVDFHTEM----KEDSDIAFHFRVYFG 59
           VPH  + P  +  G+ + I G       + P     FH  +    ++ SD A HF     
Sbjct: 4   VPHKSSLPEGIRPGTVLRIRG-------LVPPNASRFHVNLLCGEEQGSDAALHFNPRLD 56

Query: 60  -HWVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQ 101
              VV NS+  G+W  E     +PFQ G+PF + I    D ++
Sbjct: 57  TSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFK 99


>gi|4504981 galectin-1 [Homo sapiens]
          Length = 135

 Score = 31.2 bits (69), Expect = 0.35
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 45 KEDSDIAFHFRVYFG-----HWVVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCIS 94
          K+ +++  HF   F      + +V NS+  GAW  E      PFQ G    +CI+
Sbjct: 37 KDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCIT 91


>gi|8923769 histone deacetylase 8 [Homo sapiens]
          Length = 377

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 80  NMPFQDG----KPFNLCISVLADEYQPFRIISYVLQ 111
           N+P QDG    K + +C SVL + YQ F   + VLQ
Sbjct: 228 NVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQ 263


>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
           sapiens]
          Length = 375

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 94  SVLADEYQPFRIISYVLQHLFCSSSLKTFEFP-SLPPPLHLWATPRRNWAISS 145
           S+    ++ FRI+S+ L  L C   +     P SLPPPL L      ++  SS
Sbjct: 15  SIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNITESYPSSS 67


>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
          Length = 4753

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 60   HWVVMNSRVNGAWQYEVTC 78
            HW++ +   NGAW   +TC
Sbjct: 2082 HWIICDGASNGAWLDSITC 2100


>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
           sapiens]
          Length = 1194

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 115 CSSSLKTFEFPSLPPPLHLWATPRRNW-AISSHSEWE 150
           CS SL++    + PPP   W  P  +W    +H +W+
Sbjct: 83  CSRSLESLRVGAKPPPFQRW--PSDSWIRCGAHRDWD 117


>gi|54112121 splicing factor 3b, subunit 3 [Homo sapiens]
          Length = 1217

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 20  VIITGTPIIPFVMDPQLQVDFHTEMKEDS 48
           + +TG  ++ F MDP  Q++ +TE KE S
Sbjct: 556 IALTGGELVYFEMDPSGQLNEYTERKEMS 584


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 26.9 bits (58), Expect = 6.6
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 60   HW--VVMNSRVNGAWQYEVTCHNMPFQDGKPFNLCISVLADEYQPFRIISYVLQHLFCSS 117
            HW  VV  + ++ + +    CH+M  +  + F  C+++  + Y       Y+  ++F  S
Sbjct: 3090 HWTNVVKTAEISSSKR---ECHSMDTEKSRFFRFCVAIKKENYP-----DYMPSNIFSDS 3141

Query: 118  SLKTFEFP 125
            + + F  P
Sbjct: 3142 AKQIFRQP 3149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,830,457
Number of Sequences: 37866
Number of extensions: 280741
Number of successful extensions: 723
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 34
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press