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Search of human proteins with 223468574
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223468574 vesicle-associated membrane protein 7 isoform 2
[Homo sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 353 6e-98
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 333 6e-92
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens] 74 5e-14
gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens] 64 7e-11
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi... 58 5e-09
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens] 54 5e-08
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens] 52 3e-07
gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo sa... 50 1e-06
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom... 50 1e-06
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo... 48 4e-06
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo... 48 4e-06
gi|5730120 YKT6 v-SNARE protein [Homo sapiens] 40 0.001
gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens] 31 0.50
gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens] 31 0.50
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 30 1.1
gi|14591919 SEC22 vesicle trafficking protein homolog A [Homo sa... 30 1.1
gi|239755970 PREDICTED: FLJ46358 protein [Homo sapiens] 29 2.5
gi|239750493 PREDICTED: FLJ46358 protein [Homo sapiens] 29 2.5
gi|239744790 PREDICTED: hypothetical protein LOC400110 [Homo sap... 29 2.5
gi|19923761 multiple inositol polyphosphate histidine phosphatas... 28 4.2
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 28 4.2
gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens] 28 4.2
gi|221316624 dystonin isoform 4 [Homo sapiens] 28 5.5
gi|221316622 dystonin isoform 3 [Homo sapiens] 28 5.5
gi|221316618 dystonin isoform 2 [Homo sapiens] 28 5.5
gi|34577047 dystonin isoform 1 [Homo sapiens] 28 5.5
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 28 5.5
gi|21426793 amisyn [Homo sapiens] 28 5.5
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 27 7.2
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo... 27 7.2
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 353 bits (905), Expect = 6e-98
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MAILFAVVARGTTILAKHAWCGGNFLEDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYA 60
MAILFAVVARGTTILAKHAWCGGNFLEDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYA
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYA 60
Query: 61 MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 120
MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT
Sbjct: 61 MNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKT 120
Query: 121 ENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK 179
ENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK
Sbjct: 121 ENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK 179
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 333 bits (853), Expect = 6e-92
Identities = 179/220 (81%), Positives = 179/220 (81%), Gaps = 41/220 (18%)
Query: 1 MAILFAVVARGTTILAKHAWCGGNFLE--------------------------------- 27
MAILFAVVARGTTILAKHAWCGGNFLE
Sbjct: 1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60
Query: 28 --------DFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 79
DFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN
Sbjct: 61 VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 80 KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 139
KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR
Sbjct: 121 KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLAR 180
Query: 140 AMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK 179
AMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK
Sbjct: 181 AMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVKK 220
>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
Length = 100
Score = 74.3 bits (181), Expect = 5e-14
Identities = 38/100 (38%), Positives = 62/100 (62%)
Query: 73 LKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKT 132
++ SE G D+V Q++V+ +K IM +N++ + RGE LE L +KTE+L +S FKT
Sbjct: 1 MEEASEGGGNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKT 60
Query: 133 TSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFT 172
TS+ +AR KN+K+ ++I ++ + I IV G F+
Sbjct: 61 TSQKVARKFWWKNVKMIVLICVIVFIIILFIVLFATGAFS 100
>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
Length = 141
Score = 63.9 bits (154), Expect = 7e-11
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 83 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMC 142
DK+ Q QVDE+ +M NI V +RGERL+ L DK+E+L D++ F S+ L R M
Sbjct: 51 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 110
Query: 143 MKNLKLTIIIIIVSIVFIYIIV 164
+ K+ I+ +V+ + + +I+
Sbjct: 111 WRGCKIKAIMALVAAILLLVII 132
>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
2) [Homo sapiens]
Length = 116
Score = 57.8 bits (138), Expect = 5e-09
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
++ +TQAQVDE+ IM N+D V +R ++L L D+ + L + F+T++ L R
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 144 KNLKLTIII-IIVSIVFIYIIV 164
KNLK+ II+ +I +I+ I IIV
Sbjct: 91 KNLKMMIILGVICAIILIIIIV 112
>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
Length = 100
Score = 54.3 bits (129), Expect = 5e-08
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
++ +TQ QVDE+ IM N+D V +R ++L L D+ + L + F+T++ L R
Sbjct: 14 RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 73
Query: 144 KNLKLTIIIIIVSIVFIYIIV 164
KN K+ I I V ++FI II+
Sbjct: 74 KNCKMWAIGITVLVIFIIIII 94
>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
Length = 116
Score = 52.0 bits (123), Expect = 3e-07
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 89 QAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 148
Q Q +E+ IM N V +RG +L L +++ L+D S TF T++NLA+ C +N++
Sbjct: 10 QQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCWENIRY 69
Query: 149 TIII--IIVSIVFIYIIV 164
I + ++V ++ I +IV
Sbjct: 70 RICVGLVVVGVLLIILIV 87
>gi|94429050 SEC22 vesicle trafficking protein homolog B [Homo
sapiens]
Length = 215
Score = 50.1 bits (118), Expect = 1e-06
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 29 FERSRAFNFLNEIKKRFQTTYGSRAQT-ALPYAMNSEFSSVLAAQLKHHSENKGLDKVME 87
F ++ AF +L ++ F +G + T + PY+ EF + + K + ++ +
Sbjct: 79 FPKTLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF-IEFDTFIQKTKKLYIDSCARRNLGS 137
Query: 88 TQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 147
++ +++ IMV NI+ V QRGE L L K NL S ++ ++ L L
Sbjct: 138 INTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMHSTYAKLA 197
Query: 148 LTIIIIIVSIVFI 160
+ I+ IV++
Sbjct: 198 AVAVFFIMLIVYV 210
>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
sapiens]
Length = 117
Score = 49.7 bits (117), Expect = 1e-06
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R
Sbjct: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
Query: 144 KNLKLTIIIIIVSIVFIYIIVS 165
KN K+ I++ + + + +IVS
Sbjct: 93 KNCKMMIMLGAICAIIVVVIVS 114
>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 48.1 bits (113), Expect = 4e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R
Sbjct: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
Query: 144 KNLKLTIIIIIVSIVFIYIIV 164
KN K+ I++ + + + +IV
Sbjct: 93 KNCKMMIMLGAICAIIVVVIV 113
>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
sapiens]
Length = 116
Score = 48.1 bits (113), Expect = 4e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 84 KVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCM 143
++ +TQAQV+E+ I+ N+D V +R ++L L D+ + L + F++++ L R
Sbjct: 33 RLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWW 92
Query: 144 KNLKLTIIIIIVSIVFIYIIV 164
KN K+ I++ + + + +IV
Sbjct: 93 KNCKMMIMLGAICAIIVVVIV 113
>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
Length = 198
Score = 39.7 bits (91), Expect = 0.001
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 69 LAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSV 128
L L + + D + + QA++DE K I+ ++ + +RGE+L+ L+ K+E L S
Sbjct: 123 LDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSK 182
Query: 129 TFKTTSR 135
F T+R
Sbjct: 183 AFYKTAR 189
>gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
Length = 158
Score = 31.2 bits (69), Expect = 0.50
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 52 RAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGE 111
R ++ LP MN++ Q++ + + +++V+E Q +++L +D V +
Sbjct: 70 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSA----RVDAVKEENL 125
Query: 112 RL----ELLIDKTENLVDSSVTFKTTSRNLAR 139
+L ++L ENL+ +S F+TT R
Sbjct: 126 KLKSENQVLGQYIENLMSASSVFQTTDTKSKR 157
>gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens]
Length = 121
Score = 31.2 bits (69), Expect = 0.50
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 52 RAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGE 111
R ++ LP MN++ Q++ + + +++V+E Q +++L +D V +
Sbjct: 33 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSA----RVDAVKEENL 88
Query: 112 RL----ELLIDKTENLVDSSVTFKTTSRNLAR 139
+L ++L ENL+ +S F+TT R
Sbjct: 89 KLKSENQVLGQYIENLMSASSVFQTTDTKSKR 120
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 32 SRAFNFLNEIKKRFQTTYGSRAQTALPYA--MNSEFSSVLAAQLKHHSENKGLDKVMETQ 89
S A + NE+++R+ TT S + Y ++ + +++A+ + GL K++ET
Sbjct: 2647 SMAERYYNELRRRYYTTPTSYLELINLYLSMLSEKRKQIISARDR---VKNGLTKLLETN 2703
Query: 90 AQVDELKGIMVRNIDLVAQRGERLELLIDK 119
VD++K + ++ + E +E L++K
Sbjct: 2704 ILVDKMKLDLSALEPVLLAKSEDVEALMEK 2733
>gi|14591919 SEC22 vesicle trafficking protein homolog A [Homo
sapiens]
Length = 307
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 27 EDFERSRAFNFLNEIKKRFQTTYG-SRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDK 84
E++ AF+FL+E++K F TTY + TA+ PY EF + + + ++ + L
Sbjct: 76 ENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCF-IEFDNFIQRTKQRYNNPRSLST 134
Query: 85 VMETQAQVDELK 96
+ E+K
Sbjct: 135 KINLSDMQTEIK 146
>gi|239755970 PREDICTED: FLJ46358 protein [Homo sapiens]
Length = 227
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 53 AQTALPYAMNSEFSSVLAAQLKHHSENKGLDKV 85
+ TAL YA+ SE +S+ L H + + LDKV
Sbjct: 195 SNTALQYAVYSESTSLAKKLLSHDANTEALDKV 227
>gi|239750493 PREDICTED: FLJ46358 protein [Homo sapiens]
Length = 227
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 53 AQTALPYAMNSEFSSVLAAQLKHHSENKGLDKV 85
+ TAL YA+ SE +S+ L H + + LDKV
Sbjct: 195 SNTALQYAVYSESTSLAKKLLSHDANTEALDKV 227
>gi|239744790 PREDICTED: hypothetical protein LOC400110 [Homo
sapiens]
Length = 227
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 53 AQTALPYAMNSEFSSVLAAQLKHHSENKGLDKV 85
+ TAL YA+ SE +S+ L H + + LDKV
Sbjct: 195 SNTALQYAVYSESTSLAKKLLSHDANTEALDKV 227
>gi|19923761 multiple inositol polyphosphate histidine phosphatase 1
[Homo sapiens]
Length = 487
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 17 KHAWCGGNFLEDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHH 76
K WC + D + ++ +LN++K+ ++ YG Y +NS S L + H
Sbjct: 298 KSPWCD---VFDIDDAKVLEYLNDLKQYWKRGYG--------YTINSRSSCTLFQDIFQH 346
Query: 77 SENKGLDKVME 87
LDK +E
Sbjct: 347 -----LDKAVE 352
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 28.1 bits (61), Expect = 4.2
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 40 EIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIM 99
EI + T RA T L + ++ A Q HH+ + K+ME++ + +
Sbjct: 777 EISMEDEATTLFRA-TTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKL 835
Query: 100 VRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 135
+N D+ L +L + E + +S T R
Sbjct: 836 EKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLR 871
>gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 4.2
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 40 EIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIM 99
EI + T RA T L + ++ A Q HH+ + K+ME++ + +
Sbjct: 600 EISMEDEATTLFRA-TTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKL 658
Query: 100 VRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSR 135
+N D+ L +L + E + +S T R
Sbjct: 659 EKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLR 694
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 31 RSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA 90
R + N +NE K+F T ++L M + A KH ET A
Sbjct: 2153 RQSSINAMNEKVKKFMETTDPSTASSLQAKMKDLSARFSEASHKH----------KETLA 2202
Query: 91 QVDELKGIMVRNIDLVAQRGERLELLID-KTENLVDSSVTFK 131
+++ELK ++L E+L+ ++ KT+ L + V K
Sbjct: 2203 KMEELK----TKVELFENLSEKLQTFLETKTQALTEVDVPGK 2240
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 31 RSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA 90
R + N +NE K+F T ++L M + A KH ET A
Sbjct: 2164 RQSSINAMNEKVKKFMETTDPSTASSLQAKMKDLSARFSEASHKH----------KETLA 2213
Query: 91 QVDELKGIMVRNIDLVAQRGERLELLID-KTENLVDSSVTFK 131
+++ELK ++L E+L+ ++ KT+ L + V K
Sbjct: 2214 KMEELK----TKVELFENLSEKLQTFLETKTQALTEVDVPGK 2251
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 31 RSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA 90
R + N +NE K+F T ++L M + A KH ET A
Sbjct: 2302 RQSSINAMNEKVKKFMETTDPSTASSLQAKMKDLSARFSEASHKH----------KETLA 2351
Query: 91 QVDELKGIMVRNIDLVAQRGERLELLID-KTENLVDSSVTFK 131
+++ELK ++L E+L+ ++ KT+ L + V K
Sbjct: 2352 KMEELK----TKVELFENLSEKLQTFLETKTQALTEVDVPGK 2389
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 31 RSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA 90
R + N +NE K+F T ++L M + A KH ET A
Sbjct: 2124 RQSSINAMNEKVKKFMETTDPSTASSLQAKMKDLSARFSEASHKH----------KETLA 2173
Query: 91 QVDELKGIMVRNIDLVAQRGERLELLID-KTENLVDSSVTFK 131
+++ELK ++L E+L+ ++ KT+ L + V K
Sbjct: 2174 KMEELK----TKVELFENLSEKLQTFLETKTQALTEVDVPGK 2211
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 27.7 bits (60), Expect = 5.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 31 RSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQA 90
R + N +NE K+F T ++L M + A KH ET A
Sbjct: 1798 RQSSINAMNEKVKKFMETTDPSTASSLQAKMKDLSARFSEASHKH----------KETLA 1847
Query: 91 QVDELKGIMVRNIDLVAQRGERLELLID-KTENLVDSSVTFK 131
+++ELK ++L E+L+ ++ KT+ L + V K
Sbjct: 1848 KMEELK----TKVELFENLSEKLQTFLETKTQALTEVDVPGK 1885
>gi|21426793 amisyn [Homo sapiens]
Length = 210
Score = 27.7 bits (60), Expect = 5.5
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 108 QRGERLELLIDKTENLVDSSVTFKTTSRNLA 138
+RGERL +KTE+L +S+ F T+ LA
Sbjct: 175 ERGERLGRAEEKTEDLKNSAQQFAETAHKLA 205
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 27.3 bits (59), Expect = 7.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 80 KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTEN 122
KG K+ E ++D+ + +NI+L+ ++ E L ++K EN
Sbjct: 265 KGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMEN 307
>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
sapiens]
Length = 938
Score = 27.3 bits (59), Expect = 7.2
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 111 ERLELLIDKTENLVD---SSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPL 167
+RL I K + V +S T K R +C+ N+ + ++++ IVF ++ SPL
Sbjct: 298 DRLIQFISKLQFAVTVLLTSWTEKKQRRKTTATLCILNIVFSPFVLVI-IVFSTLLSSPL 356
Query: 168 CGGFTWP 174
FT P
Sbjct: 357 LPLFTLP 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,153,556
Number of Sequences: 37866
Number of extensions: 166213
Number of successful extensions: 717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 37
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.