Guide to the Human Genome
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Name: AIFM1 Sequence: fasta or formatted (609aa) NCBI GI: 22202629
Description:

programmed cell death 8 isoform 2

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Mitochondria

Other entries for this name:
alt prot [261aa] programmed cell death 8 isoform 4
alt prot [324aa] programmed cell death 8 isoform 5
alt prot [326aa] programmed cell death 8 isoform 3
alt prot [613aa] programmed cell death 8 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         52           3
 C cysteine            0.8          5           1
 D aspartate           4.8         29           2
 E glutamate           6.7         41           2
 F phenylalanine       3.3         20           1
 G glycine             9.7         59           3
 H histidine           1.8         11           2
 I isoleucine          5.6         34           2
 K lysine              6.7         41           2
 L leucine             8.2         50           2
 M methionine          1.6         10           1
 N asparagine          3.3         20           1
 P proline             5.3         32           2
 Q glutamine           3.3         20           1
 R arginine            6.2         38           3
 S serine              7.4         45           2
 T threonine           4.6         28           2
 V valine              8.5         52           3
 W tryptophan          1.1          7           1
 Y tyrosine            2.5         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   programmed cell death 8 isoform 2 
AIFM1                 0.943   programmed cell death 8 isoform 1 
AIFM1                 0.472   programmed cell death 8 isoform 3 
AIFM1                 0.453   programmed cell death 8 isoform 5 
AIFM1                 0.421   programmed cell death 8 isoform 4 
AIFM3                 0.074   apoptosis-inducing factor, mitochondrion-associated...
AIFM3                 0.074   apoptosis-inducing factor, mitochondrion-associated,...
AIFM3                 0.074   apoptosis-inducing factor, mitochondrion-associated,...
C4orf49               0.027   ovary-specific acidic protein 
AIFM2                 0.022   apoptosis-inducing factor (AIF)-like mitchondrion-as...
GSR                   0.013   glutathione reductase 
PYROXD1               0.011   pyridine nucleotide-disulphide oxidoreductase domain...
PRKCSH                0.009   protein kinase C substrate 80K-H isoform 1 
NCOR1                 0.009   nuclear receptor co-repressor 1 
PHLPP2                0.007   PH domain and leucine rich repeat protein phosphatas...
REXO1                 0.007   transcription elongation factor B polypeptide 3 bin...
LOC100287250          0.007   PREDICTED: hypothetical protein XP_002344493 
NHSL1                 0.006   NHS-like 1 
UEVLD                 0.005   ubiquitin-conjugating enzyme E2-like isoform a [Hom...
UEVLD                 0.005   ubiquitin-conjugating enzyme E2-like isoform b [Hom...
RGPD8                 0.004   PREDICTED: RANBP2-like and GRIP domain containing 8...
HNRNPUL2              0.004   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
ENO1                  0.004   enolase 1 
PRKCSH                0.004   protein kinase C substrate 80K-H isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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