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Search of human proteins with 217416360
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217416360 G protein-coupled receptor 175 isoform 2 [Homo
sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217416360 G protein-coupled receptor 175 isoform 2 [Homo sapi... 594 e-170
gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo sapi... 399 e-111
gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo sapi... 399 e-111
gi|239753634 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|239748191 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|239742087 PREDICTED: hypothetical protein [Homo sapiens] 32 0.66
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 32 0.66
gi|239735575 otoancorin isoform 3 [Homo sapiens] 31 1.5
gi|77404409 otoancorin isoform 1 [Homo sapiens] 31 1.5
gi|30410043 late cornified envelope 2D [Homo sapiens] 30 2.5
gi|194239681 tubulin tyrosine ligase-like family, member 10 isof... 30 2.5
gi|85540447 solute carrier family 26, member 11 [Homo sapiens] 29 4.3
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 29 4.3
gi|110618253 mitochondrial DNA-directed RNA polymerase precursor... 29 4.3
gi|68989258 neurogenin 3 [Homo sapiens] 29 5.6
gi|109150431 ring finger protein 31 [Homo sapiens] 29 5.6
gi|116734855 cysteine-rich with EGF-like domains 1 isoform 3 [Ho... 29 5.6
gi|72534728 cysteine-rich with EGF-like domains 1 isoform 1 [Hom... 29 5.6
gi|22095397 cysteine-rich with EGF-like domains 1 isoform 2 [Hom... 29 5.6
gi|12965176 taste receptor, type 2, member 7 [Homo sapiens] 29 5.6
gi|27363480 hypothetical protein LOC55262 [Homo sapiens] 28 7.3
gi|153792776 G protein-coupled receptor 171 [Homo sapiens] 28 7.3
gi|52317154 olfactory receptor, family 51, subfamily S, member 1... 28 7.3
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 28 9.6
gi|5453808 neurotrophin 5 preproprotein [Homo sapiens] 28 9.6
>gi|217416360 G protein-coupled receptor 175 isoform 2 [Homo
sapiens]
Length = 293
Score = 594 bits (1531), Expect = e-170
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
Sbjct: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
Query: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
Sbjct: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
Query: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
Sbjct: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
Query: 181 EDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGFPPGLLRLGAQDPLLLQ 240
EDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGFPPGLLRLGAQDPLLLQ
Sbjct: 181 EDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGFPPGLLRLGAQDPLLLQ 240
Query: 241 MPSGRDRGARCTPTPALRCGPAGGPGGCRGCWGLSCQLLEHAVRLCRRGGLPG 293
MPSGRDRGARCTPTPALRCGPAGGPGGCRGCWGLSCQLLEHAVRLCRRGGLPG
Sbjct: 241 MPSGRDRGARCTPTPALRCGPAGGPGGCRGCWGLSCQLLEHAVRLCRRGGLPG 293
>gi|209862909 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 399 bits (1025), Expect = e-111
Identities = 203/204 (99%), Positives = 204/204 (100%)
Query: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
Sbjct: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
Query: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
Sbjct: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
Query: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
Sbjct: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
Query: 181 EDFNIYGHGGRQFWLVSSCFFFLL 204
EDFNIYGHGGRQFWLVSSCFFFL+
Sbjct: 181 EDFNIYGHGGRQFWLVSSCFFFLV 204
>gi|217416358 G protein-coupled receptor 175 isoform 1 [Homo
sapiens]
Length = 373
Score = 399 bits (1025), Expect = e-111
Identities = 203/204 (99%), Positives = 204/204 (100%)
Query: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF
Sbjct: 1 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 60
Query: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI
Sbjct: 61 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 120
Query: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA
Sbjct: 121 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 180
Query: 181 EDFNIYGHGGRQFWLVSSCFFFLL 204
EDFNIYGHGGRQFWLVSSCFFFL+
Sbjct: 181 EDFNIYGHGGRQFWLVSSCFFFLV 204
>gi|239753634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.66
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 213 LQLLRSAHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPAGG 264
LQL+ +A LRGF + A++ L PSG RGAR PTP LR G G
Sbjct: 112 LQLILTA-LRGFHDQIQEQEAEELRLTNGPSGLFRGARFCPTP-LRNGTREG 161
>gi|239748191 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.66
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 213 LQLLRSAHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPAGG 264
LQL+ +A LRGF + A++ L PSG RGAR PTP LR G G
Sbjct: 112 LQLILTA-LRGFHDQIQEQEAEELRLTNGPSGLFRGARFCPTP-LRNGTREG 161
>gi|239742087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.66
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 213 LQLLRSAHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPAGG 264
LQL+ +A LRGF + A++ L PSG RGAR PTP LR G G
Sbjct: 112 LQLILTA-LRGFHDQIQEQEAEELRLTNGPSGLFRGARFCPTP-LRNGTREG 161
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 32.0 bits (71), Expect = 0.66
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 41 SRVRYWDLLLLIPNVLFLIFLLWKLPSARAKIRIT 75
SR + LLL LFL+ +LWK+PS ++R+T
Sbjct: 49 SRKNNYGLLLNENESLFLMVVLWKIPSKELRVRLT 83
>gi|239735575 otoancorin isoform 3 [Homo sapiens]
Length = 1060
Score = 30.8 bits (68), Expect = 1.5
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 101 SMTVSTSNAATVADKILWEITRFFL-LAIE----LSVIILGLAFGHLESKSSIKRVLAIT 155
S + +A+ V+ + LW + R+ + L+ E +S I +GL + + + V IT
Sbjct: 163 SSNATDDSASWVSAEHLWVLGRYMVHLSFEEITKISPIEIGLFISYDNATKQLDMVYDIT 222
Query: 156 TVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFF----FLLCRCHNLP 211
L+ A+ LE +S+ +FN+ + CF+ L +
Sbjct: 223 PELAQAF------LE------RISSSNFNMRNTSTIHRLGLLVCFYNDLELLDATVAQVL 270
Query: 212 VLQLLRSAHLRGFPPGLLRLGAQ 234
+ Q+++ +HLRGF G+ +L A+
Sbjct: 271 LYQMIKCSHLRGFQAGVQKLKAE 293
>gi|77404409 otoancorin isoform 1 [Homo sapiens]
Length = 1139
Score = 30.8 bits (68), Expect = 1.5
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 101 SMTVSTSNAATVADKILWEITRFFL-LAIE----LSVIILGLAFGHLESKSSIKRVLAIT 155
S + +A+ V+ + LW + R+ + L+ E +S I +GL + + + V IT
Sbjct: 242 SSNATDDSASWVSAEHLWVLGRYMVHLSFEEITKISPIEIGLFISYDNATKQLDMVYDIT 301
Query: 156 TVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFF----FLLCRCHNLP 211
L+ A+ LE +S+ +FN+ + CF+ L +
Sbjct: 302 PELAQAF------LE------RISSSNFNMRNTSTIHRLGLLVCFYNDLELLDATVAQVL 349
Query: 212 VLQLLRSAHLRGFPPGLLRLGAQ 234
+ Q+++ +HLRGF G+ +L A+
Sbjct: 350 LYQMIKCSHLRGFQAGVQKLKAE 372
>gi|30410043 late cornified envelope 2D [Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 249 ARCTPTPALRCGPAGG------PGGCRGCWGLSCQLLEHAVRLCRR 288
A C+P + CGP+ G GGC G C L H RL R
Sbjct: 38 APCSPAVSSCCGPSSGSCCGPSSGGCCSSGGGGCCLSHHRPRLFHR 83
>gi|194239681 tubulin tyrosine ligase-like family, member 10 isoform
1 [Homo sapiens]
Length = 673
Score = 30.0 bits (66), Expect = 2.5
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 217 RSAHLRGFPPGLLRLG---AQDPLLLQMPSGRDRG----ARCTPTPALRCGPAGGPGGC 268
R H RG PP R G + P + Q P R G +R P PA + GP PG C
Sbjct: 7 RFIHRRG-PPTRTRAGFKRGKRPRIQQRPRARVSGTIPASRLHPAPASQPGPCPAPGHC 64
>gi|85540447 solute carrier family 26, member 11 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 4.3
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 48/168 (28%)
Query: 73 RITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEITRFFLLAIELSV 132
R+ P+ +TF + + V +A A+VS+ + +AA K+ E V
Sbjct: 432 RLDLLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPETKVS-----------EGPV 480
Query: 133 IIL----GLAFGHLES--KSSIKRVLAI----------TTVLSLAYSVTQGTLEILYPDA 176
++L GL+F +E+ + + R L + T V S+ Y+V G E+L
Sbjct: 481 LVLQPASGLSFPAMEALREEILSRALEVSPPRCLVLECTHVCSIDYTVVLGLGELL---- 536
Query: 177 HLSAEDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGF 224
+DF G V+ F L +PVL++L SA L+GF
Sbjct: 537 ----QDFQKQG--------VALAFVGL-----QVPVLRVLLSADLKGF 567
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 4.3
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 52 IPNVLFLIFLLWKLPSARAKIRITSSPIFIT 82
+P L + LLW LP AR I++T SP F++
Sbjct: 5 VPAQLLGLLLLW-LPGARCDIQLTQSPSFLS 34
>gi|110618253 mitochondrial DNA-directed RNA polymerase precursor
[Homo sapiens]
Length = 1230
Score = 29.3 bits (64), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 271 CWGLSCQLLEHAVRLCRRGGLPG 293
CWG L+ A+R C R GLPG
Sbjct: 5 CWGRGAAGLKRALRPCGRPGLPG 27
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 28.9 bits (63), Expect = 5.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 255 PALRCGPAGGPGGCRGCWG 273
PA CG G PGG G WG
Sbjct: 152 PAPHCGELGSPGGSPGDWG 170
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 28.9 bits (63), Expect = 5.6
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 228 LLRLGAQDPLLLQMPSG---RDRGARCTPTPALRCGPAGGPGGCRGCWGLSCQLLEH 281
+L+L DPLL ++ G TP P CG A G C C C +H
Sbjct: 186 MLQLSEFDPLLREIAPGPLTTPSVPGSTPGPCFLCGSAPGTLHCPSCKQALCPACDH 242
>gi|116734855 cysteine-rich with EGF-like domains 1 isoform 3 [Homo
sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 5.6
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 207 CHNLPVL--QLLRS--AHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPA 262
CH L L +L+ S H + P L + D L L P+G G C P P P
Sbjct: 105 CHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPAGTF-GPSCLPCPGGTERPC 163
Query: 263 GGPGGCRG 270
GG G C G
Sbjct: 164 GGYGQCEG 171
>gi|72534728 cysteine-rich with EGF-like domains 1 isoform 1 [Homo
sapiens]
Length = 422
Score = 28.9 bits (63), Expect = 5.6
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 207 CHNLPVL--QLLRS--AHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPA 262
CH L L +L+ S H + P L + D L L P+G G C P P P
Sbjct: 105 CHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPAGTF-GPSCLPCPGGTERPC 163
Query: 263 GGPGGCRG 270
GG G C G
Sbjct: 164 GGYGQCEG 171
>gi|22095397 cysteine-rich with EGF-like domains 1 isoform 2 [Homo
sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 5.6
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 207 CHNLPVL--QLLRS--AHLRGFPPGLLRLGAQDPLLLQMPSGRDRGARCTPTPALRCGPA 262
CH L L +L+ S H + P L + D L L P+G G C P P P
Sbjct: 105 CHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPAGTF-GPSCLPCPGGTERPC 163
Query: 263 GGPGGCRG 270
GG G C G
Sbjct: 164 GGYGQCEG 171
>gi|12965176 taste receptor, type 2, member 7 [Homo sapiens]
Length = 318
Score = 28.9 bits (63), Expect = 5.6
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 112 VADKILWEITRFFLLAIELSVIILGLAF------------GHLESKSSIKRVLAITTVLS 159
+ADK+ + T FL E SV ILG AF + S I LAI+ +
Sbjct: 1 MADKV--QTTLLFLAVGEFSVGILGNAFIGLVNCMDWVKKRKIASIDLILTSLAISRICL 58
Query: 160 LAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLLCRC 207
L + + +LYPD + + ++ I FW +++ C
Sbjct: 59 LCVILLDCFILVLYPDVYATGKEMRIIDF----FWTLTNHLSIWFATC 102
>gi|27363480 hypothetical protein LOC55262 [Homo sapiens]
Length = 580
Score = 28.5 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 257 LRC------GPAGGPG-GCRGCWGLSCQLLEHAVRLCRRGGLPG 293
LRC G GGPG G RG W L + GG+PG
Sbjct: 50 LRCRGGAGSGTGGGPGLGSRGAWAELATALAALASVSAGGGMPG 93
>gi|153792776 G protein-coupled receptor 171 [Homo sapiens]
Length = 319
Score = 28.5 bits (62), Expect = 7.3
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 80 FITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEITRFFLLAIELSVIIL 135
F F+ LVF+V ++G A + +N V+ ++ +T FLL + L V I+
Sbjct: 17 FTYFFYLVFLVGIIGSCFATWAFIQKNTNHRCVSIYLINLLTADFLLTLALPVKIV 72
>gi|52317154 olfactory receptor, family 51, subfamily S, member 1
[Homo sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 7.3
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 14 TALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIFLLWKLPSARAKIR 73
+ LP +APN S LL G S W L LI ++LL L +
Sbjct: 2 STLPTQIAPNSSTSMAPTFLLVGMPGLSGAPSWWTLPLI-----AVYLLSALGNGTILWI 56
Query: 74 ITSSPIF---ITFYILVFVVALVGIARAVVS--MTVSTSNAATV-ADKILWEITRFFLLA 127
I P + F++ + V+ +G+ A++ + ++ + A TV A L ++ + +
Sbjct: 57 IALQPALHRPMHFFLFLLSVSDIGLVTALMPTLLGIALAGAHTVPASACLLQMVFIHVFS 116
Query: 128 IELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTL 169
+ S ++L + SI R LAI L +T G +
Sbjct: 117 VMESSVLLAM---------SIDRALAICRPLHYPALLTNGVI 149
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 28.1 bits (61), Expect = 9.6
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 195 LVSSCFFFL-LCRCHNLPVLQLLRSAHLRGFPPGL 228
LV+S F + L NL LQ L+ A L GFPPGL
Sbjct: 2745 LVNSLFAGMDLTSLQNLQNLQSLQLAGLMGFPPGL 2779
>gi|5453808 neurotrophin 5 preproprotein [Homo sapiens]
Length = 210
Score = 28.1 bits (61), Expect = 9.6
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 250 RCTPTPALRCGPAGGPGGCRGC----WGLSCQLLEHAVR 284
RC A GP G GGCRG W C+ + VR
Sbjct: 140 RCKADNAEEGGPGAGGGGCRGVDRRHWVSECKAKQSYVR 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,393,352
Number of Sequences: 37866
Number of extensions: 623364
Number of successful extensions: 2430
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2420
Number of HSP's gapped (non-prelim): 25
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.