Guide to the Human Genome
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Name: OR12D2 Sequence: fasta or formatted (307aa) NCBI GI: 21450850
Description:

olfactory receptor, family 12, subfamily D, member 2

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         15           1
 C cysteine            3.3         10           1
 D aspartate           2.3          7           1
 E glutamate           2.0          6           1
 F phenylalanine       8.5         26           2
 G glycine             4.2         13           1
 H histidine           3.3         10           2
 I isoleucine          7.8         24           2
 K lysine              2.9          9           1
 L leucine            15.3         47           3
 M methionine          4.6         14           1
 N asparagine          3.6         11           1
 P proline             3.6         11           1
 Q glutamine           2.6          8           1
 R arginine            3.3         10           2
 S serine              7.5         23           1
 T threonine           8.5         26           2
 V valine              7.5         23           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 12, subfamily D, member 2... 
OR12D3                0.667   olfactory receptor, family 12, subfamily D, member 3...
OR5V1                 0.448   olfactory receptor, family 5, subfamily V, member 1 ...
OR5F1                 0.426   olfactory receptor, family 5, subfamily F, member 1 ...
OR1E1                 0.425   olfactory receptor, family 1, subfamily E, member 1...
OR1L4                 0.423   olfactory receptor, family 1, subfamily L, member 4 ...
OR5I1                 0.416   olfactory receptor, family 5, subfamily I, member 1 [...
OR1L6                 0.416   olfactory receptor, family 1, subfamily L, member 6 ...
OR1L3                 0.413   olfactory receptor, family 1, subfamily L, member 3 ...
OR13D1                0.413   olfactory receptor, family 13, subfamily D, member 1...
OR1E2                 0.413   olfactory receptor, family 1, subfamily E, member 2 ...
OR1F1                 0.411   olfactory receptor, family 1, subfamily F, member 1 [...
OR8U1                 0.409   olfactory receptor, family 8, subfamily U, member 1 ...
OR4E2                 0.409   olfactory receptor, family 4, subfamily E, member 2 ...
OR5A1                 0.409   olfactory receptor, family 5, subfamily A, member 1 ...
OR8U8                 0.408   olfactory receptor, family 8, subfamily U, member 8 ...
OR8U9                 0.408   olfactory receptor, family 8, subfamily U, member 9 ...
OR2G3                 0.406   olfactory receptor, family 2, subfamily G, member 3 ...
OR5T3                 0.404   olfactory receptor, family 5, subfamily T, member 3 ...
OR1D2                 0.404   olfactory receptor, family 1, subfamily D, member 2 [...
OR1C1                 0.403   olfactory receptor, family 1, subfamily C, member 1...
OR5AP2                0.403   olfactory receptor, family 5, subfamily AP, member 2...
OR6N1                 0.403   olfactory receptor, family 6, subfamily N, member 1 ...
OR5B21                0.403   olfactory receptor, family 5, subfamily B, member 21...
OR1L1                 0.403   olfactory receptor, family 1, subfamily L, member 1...
OR4S2                 0.403   olfactory receptor, family 4, subfamily S, member 2...
OR4D5                 0.403   olfactory receptor, family 4, subfamily D, member 5 ...
OR8H2                 0.401   olfactory receptor, family 8, subfamily H, member 2 ...
OR4D1                 0.399   olfactory receptor, family 4, subfamily D, member 1 ...
OR10G9                0.399   olfactory receptor, family 10, subfamily G, member 9...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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