Guide to the Human Genome
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Name: CAMK2D Sequence: fasta or formatted (489aa) NCBI GI: 212549756
Description:

calcium/calmodulin-dependent protein kinase II delta isoform 4

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [492aa] calcium/calmodulin-dependent protein kinase II delta isoform 5
alt prot [499aa] calcium/calmodulin-dependent protein kinase II delta isoform 3
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 1
alt prot [478aa] calcium/calmodulin-dependent protein kinase II delta isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         38           2
 C cysteine            2.0         10           1
 D aspartate           5.5         27           2
 E glutamate           7.2         35           2
 F phenylalanine       3.9         19           1
 G glycine             5.7         28           2
 H histidine           3.7         18           1
 I isoleucine          6.3         31           2
 K lysine              7.6         37           2
 L leucine             8.4         41           3
 M methionine          2.7         13           2
 N asparagine          3.5         17           2
 P proline             4.5         22           2
 Q glutamine           3.9         19           2
 R arginine            5.3         26           2
 S serine              6.1         30           4
 T threonine           5.9         29           3
 V valine              5.5         27           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.1         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium/calmodulin-dependent protein kinase II delt... 
CAMK2D                0.972   calcium/calmodulin-dependent protein kinase II delt...
CAMK2D                0.971   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.971   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.971   calcium/calmodulin-dependent protein kinase II delta...
CAMK2D                0.969   calcium/calmodulin-dependent protein kinase II delta...
CAMK2A                0.883   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2B                0.877   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.876   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.871   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.868   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.868   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.865   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.865   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2G                0.861   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2A                0.855   calcium/calmodulin-dependent protein kinase II alpha...
CAMK2B                0.855   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2G                0.843   calcium/calmodulin-dependent protein kinase II gamma...
CAMK2B                0.822   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.791   calcium/calmodulin-dependent protein kinase II beta ...
CAMK2B                0.606   calcium/calmodulin-dependent protein kinase II beta ...
CASK                  0.268   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.268   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.268   calcium/calmodulin-dependent serine protein kinase ...
CAMK4                 0.231   calcium/calmodulin-dependent protein kinase IV 
CAMK1D                0.217   calcium/calmodulin-dependent protein kinase ID isofor...
CAMK1D                0.217   calcium/calmodulin-dependent protein kinase ID isofo...
CAMK1                 0.209   calcium/calmodulin-dependent protein kinase I 
CAMK1G                0.207   calcium/calmodulin-dependent protein kinase IG [Homo...
PNCK                  0.205   pregnancy upregulated non-ubiquitously expressed Ca...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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