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Search of human proteins with 209862815
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862815 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862815 FXYD domain containing ion transport regulator 3 is... 135 7e-33
gi|209862813 FXYD domain containing ion transport regulator 3 is... 135 7e-33
gi|209862819 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|209862817 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|209862811 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|209862809 FXYD domain containing ion transport regulator 3 is... 69 1e-12
gi|11612674 FXYD domain containing ion transport regulator 3 iso... 69 1e-12
gi|5174635 FXYD domain containing ion transport regulator 3 isof... 69 1e-12
gi|27764904 FXYD domain containing ion transport regulator 4 [Ho... 33 0.038
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 27 4.6
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 27 4.6
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 27 4.6
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 27 4.6
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 27 4.6
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 27 4.6
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 27 4.6
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 26 6.0
gi|110347437 latent transforming growth factor beta binding prot... 26 6.0
gi|110347412 latent transforming growth factor beta binding prot... 26 6.0
gi|110347431 latent transforming growth factor beta binding prot... 26 6.0
gi|133922590 alcohol dehydrogenase, iron containing, 1 [Homo sap... 26 7.9
>gi|209862815 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 135 bits (340), Expect = 7e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL 60
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL 60
Query: 61 T 61
T
Sbjct: 61 T 61
>gi|209862813 FXYD domain containing ion transport regulator 3
isoform 5 precursor [Homo sapiens]
Length = 61
Score = 135 bits (340), Expect = 7e-33
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL 60
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTYCLVPRVPIQGWGL 60
Query: 61 T 61
T
Sbjct: 61 T 61
>gi|209862819 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|209862817 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|209862811 FXYD domain containing ion transport regulator 3
isoform4 precursor [Homo sapiens]
Length = 96
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|209862809 FXYD domain containing ion transport regulator 3
isoform 3 [Homo sapiens]
Length = 144
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 58 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 89
>gi|11612674 FXYD domain containing ion transport regulator 3
isoform 2 precursor [Homo sapiens]
Length = 113
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|5174635 FXYD domain containing ion transport regulator 3
isoform 1 precursor [Homo sapiens]
Length = 87
Score = 68.6 bits (166), Expect = 1e-12
Identities = 32/32 (100%), Positives = 32/32 (100%)
Query: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY
Sbjct: 1 MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYY 32
>gi|27764904 FXYD domain containing ion transport regulator 4
[Homo sapiens]
Length = 89
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 1 MQKVTLGLLVFLAGFPVLDAND-LEDKNSPFYY 32
M++VTL LL+ LAG L+AND +K+ PFYY
Sbjct: 1 MERVTLALLL-LAGLTALEANDPFANKDDPFYY 32
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 36 PCPLSPPHNPTYCLVPRVPIQGWG 59
P P+ P+ CL P P+QGWG
Sbjct: 49 PDPVRLTLFPSCCLRPPEPVQGWG 72
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|209180475 nuclear matrix transcription factor 4 isoform d
[Homo sapiens]
Length = 577
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 21 NDLEDKNSPFYYGESPCPLSPPHNPTYCLVP 51
N ++D+ P E C L+PPH PT VP
Sbjct: 30 NKMKDQLLP----EKGCGLAPPHYPTLLTVP 56
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 14 GFPVLDANDLEDK------NSPFYYGESPCPLSPPHNPTYCLVPRVPI 55
G P++ A++L+D + P E PL PP P + P+
Sbjct: 795 GVPIIFADELDDSKPPPSSSMPLILQEEKAPLPPPEYPNQSVPETTPL 842
>gi|110347437 latent transforming growth factor beta binding protein 4
isoform c [Homo sapiens]
Length = 1557
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 14 GFPVLDANDLEDKNSPFYYGESPCPLSP 41
G P D D ED P+ E+P P P
Sbjct: 1400 GAPRFDMPDFEDDGGPYGESEAPAPPGP 1427
>gi|110347412 latent transforming growth factor beta binding protein 4
isoform b [Homo sapiens]
Length = 1587
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 14 GFPVLDANDLEDKNSPFYYGESPCPLSP 41
G P D D ED P+ E+P P P
Sbjct: 1430 GAPRFDMPDFEDDGGPYGESEAPAPPGP 1457
>gi|110347431 latent transforming growth factor beta binding protein 4
isoform a [Homo sapiens]
Length = 1624
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 14 GFPVLDANDLEDKNSPFYYGESPCPLSP 41
G P D D ED P+ E+P P P
Sbjct: 1467 GAPRFDMPDFEDDGGPYGESEAPAPPGP 1494
>gi|133922590 alcohol dehydrogenase, iron containing, 1 [Homo
sapiens]
Length = 467
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 13 AGFPVLDANDLEDKNSPFYYGESPCPLSPPHNPTY 47
+GF VL + LE + Y+ SPCP +P P Y
Sbjct: 239 SGFDVL-CHALESYTTLPYHLRSPCPSNPITRPAY 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.144 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,078,870
Number of Sequences: 37866
Number of extensions: 130651
Number of successful extensions: 457
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 22
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.