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Search of human proteins with 20357599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20357599 H2A histone family, member V isoform 2 [Homo
sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens] 221 7e-59
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens] 209 5e-55
gi|4504255 H2A histone family, member Z [Homo sapiens] 206 4e-54
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens] 159 6e-40
gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens] 130 2e-31
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens] 126 3e-30
gi|24638446 histone cluster 2, H2ac [Homo sapiens] 126 3e-30
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens] 126 3e-30
gi|15617199 histone cluster 3, H2a [Homo sapiens] 126 4e-30
gi|10800130 histone cluster 1, H2ad [Homo sapiens] 126 4e-30
gi|10800132 histone cluster 1, H2ag [Homo sapiens] 125 9e-30
gi|4504239 histone cluster 1, H2ai [Homo sapiens] 125 9e-30
gi|18105045 histone cluster 1, H2ah [Homo sapiens] 125 9e-30
gi|4504241 histone cluster 1, H2ak [Homo sapiens] 125 9e-30
gi|4504245 histone cluster 1, H2ac [Homo sapiens] 125 9e-30
gi|19557656 histone cluster 1, H2ab [Homo sapiens] 125 9e-30
gi|10645195 histone cluster 1, H2ae [Homo sapiens] 125 9e-30
gi|4504249 histone cluster 1, H2am [Homo sapiens] 125 9e-30
gi|4504243 histone cluster 1, H2al [Homo sapiens] 125 9e-30
gi|10800144 histone cluster 1, H2aj [Homo sapiens] 125 9e-30
gi|29553970 H2A histone family, member J [Homo sapiens] 124 1e-29
gi|25092737 histone cluster 1, H2aa [Homo sapiens] 123 3e-29
gi|28195394 histone cluster 2, H2ab [Homo sapiens] 123 4e-29
gi|4504253 H2A histone family, member X [Homo sapiens] 122 6e-29
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens] 115 6e-27
gi|8923920 H2A histone family, member Y2 [Homo sapiens] 103 4e-23
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens] 102 5e-23
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens] 102 5e-23
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens] 102 5e-23
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens] 102 5e-23
>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
Length = 114
Score = 221 bits (564), Expect = 7e-59
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
Query: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGEKRRCS 114
YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGEKRRCS
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGEKRRCS 114
>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
Length = 128
Score = 209 bits (531), Expect = 5e-55
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
Query: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
>gi|4504255 H2A histone family, member Z [Homo sapiens]
Length = 128
Score = 206 bits (523), Expect = 4e-54
Identities = 106/108 (98%), Positives = 107/108 (99%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
MAGGKAGKDSGKAK KAVSRSQRAGLQFPVGRIHRHLK+RTTSHGRVGATAAVYSAAILE
Sbjct: 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60
Query: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
Length = 102
Score = 159 bits (401), Expect = 6e-40
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 28 FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87
FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 2 FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
Query: 88 QLAIRGDEELDSLIKATIAGG 108
QLAIRGDEELDSLIKATIAGG
Sbjct: 62 QLAIRGDEELDSLIKATIAGG 82
>gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]
Length = 66
Score = 130 bits (327), Expect = 2e-31
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
Query: 61 YLTAEV 66
YLTAEV
Sbjct: 61 YLTAEV 66
>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
Length = 130
Score = 126 bits (317), Expect = 3e-30
Identities = 70/103 (67%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
Length = 129
Score = 126 bits (317), Expect = 3e-30
Identities = 70/103 (67%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
Length = 130
Score = 126 bits (317), Expect = 3e-30
Identities = 70/103 (67%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|15617199 histone cluster 3, H2a [Homo sapiens]
Length = 130
Score = 126 bits (316), Expect = 4e-30
Identities = 70/103 (67%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ S RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG 106
>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
Length = 130
Score = 126 bits (316), Expect = 4e-30
Identities = 70/103 (67%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ S RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
Length = 128
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG 106
>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ S RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG 106
>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ S RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG 106
>gi|4504249 histone cluster 1, H2am [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|4504243 histone cluster 1, H2al [Homo sapiens]
Length = 130
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
Length = 128
Score = 125 bits (313), Expect = 9e-30
Identities = 69/103 (66%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA +RS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|29553970 H2A histone family, member J [Homo sapiens]
Length = 129
Score = 124 bits (312), Expect = 1e-29
Identities = 69/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GK +AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
Length = 131
Score = 123 bits (309), Expect = 3e-29
Identities = 69/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AK+ SRS RAGLQFPVGRIHR L+ + R+GA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNAS+D K RI PRHLQLAIR DEEL+ L+ TIA G
Sbjct: 64 LELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQG 106
>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
Length = 130
Score = 123 bits (308), Expect = 4e-29
Identities = 68/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLA+R DEEL+ L+ TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQG 106
>gi|4504253 H2A histone family, member X [Homo sapiens]
Length = 143
Score = 122 bits (306), Expect = 6e-29
Identities = 69/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66
GK GKA+AKA SRS RAGLQFPVGR+HR L+ + RVGA A VY AA+LEYLTAE+
Sbjct: 5 GKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEI 63
Query: 67 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108
LELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA G
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQG 106
>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
Length = 90
Score = 115 bits (289), Expect = 6e-27
Identities = 70/108 (64%), Positives = 70/108 (64%), Gaps = 38/108 (35%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
MAGGKAGKDSGKAKAKAVSRSQRAGLQ
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ--------------------------------- 27
Query: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 28 -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 70
>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
Length = 372
Score = 103 bits (256), Expect = 4e-23
Identities = 56/100 (56%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
Query: 10 SGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLEL 69
SGK K +SRS RAG+ FPVGR+ R+LK T + R+ A VY AA++EYL AE+LEL
Sbjct: 5 SGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILEL 63
Query: 70 AGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
AGNA++D K RI PRH+ LA+ DEEL+ L+K TIA G
Sbjct: 64 AGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASG 103
>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 102 bits (255), Expect = 5e-23
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
Query: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA G
Sbjct: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 102 bits (255), Expect = 5e-23
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
Query: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA G
Sbjct: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
Length = 372
Score = 102 bits (255), Expect = 5e-23
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
Query: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA G
Sbjct: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
Length = 369
Score = 102 bits (255), Expect = 5e-23
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 11 GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70
GK K+ SRS +AG+ FPVGR+ R++K + R+G A VY AA+LEYLTAE+LELA
Sbjct: 6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
Query: 71 GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108
GNA++D K R+TPRH+ LA+ DEEL+ L+K TIA G
Sbjct: 65 GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,791,665
Number of Sequences: 37866
Number of extensions: 123816
Number of successful extensions: 407
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 48
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.