TRIM48 11929

Name: TRIM48	Sequence: fasta or formatted (224aa)		NCBI GI: 201862060
Description: tripartite motif-containing 48		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 10 2 C cysteine 5.8 13 1 D aspartate 2.7 6 1 E glutamate 6.7 15 2 F phenylalanine 4.0 9 1 G glycine 3.1 7 1 H histidine 3.6 8 1 I isoleucine 6.7 15 2 K lysine 5.4 12 2 L leucine 11.6 26 2 M methionine 3.6 8 1 N asparagine 4.9 11 1 P proline 3.6 8 1 Q glutamine 6.2 14 2 R arginine 8.5 19 2 S serine 7.1 16 3 T threonine 4.9 11 2 V valine 2.7 6 1 W tryptophan 2.7 6 1 Y tyrosine 1.8 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 48 LOC729384 0.721 hypothetical protein LOC729384 LOC100134006 0.721 PREDICTED: similar to ring finger protein 18 isofor... LOC399939 0.721 PREDICTED: similar to ring finger protein 18 LOC100131392 0.721 PREDICTED: similar to ring finger protein 18 LOC399939 0.721 PREDICTED: similar to ring finger protein 18 TRIM53 0.692 tripartite motif-containing 53 LOC642425 0.692 tripartite motif-containing 53-like LOC642425 0.692 PREDICTED: tripartite motif-containing 53-like [Hom... LOC340970 0.670 PREDICTED: similar to tripartite motif-containing 5... LOC340970 0.670 PREDICTED: similar to tripartite motif-containing 5... LOC340970 0.665 PREDICTED: similar to tripartite motif-containing 5... LOC653111 0.641 PREDICTED: similar to ring finger protein 18 TRIM49 0.641 ring finger protein 18 LOC283116 0.627 PREDICTED: similar to ring finger protein 18 isofor... LOC283116 0.627 PREDICTED: similar to ring finger protein 18 isofor... LOC283116 0.627 PREDICTED: similar to ring finger protein 18 LOC283116 0.627 PREDICTED: similar to ring finger protein 18 LOC652859 0.607 PREDICTED: similar to Tripartite motif-containing pr... LOC120824 0.592 PREDICTED: similar to hCG1802386 LOC120824 0.592 PREDICTED: similar to hCG1802386 LOC120824 0.592 PREDICTED: similar to hCG1802386 SPRYD5 0.580 SPRY domain containing 5 TRIM43 0.426 tripartite motif-containing 43 LOC653192 0.417 PREDICTED: Tripartite motif-containing protein 43-li... LOC642446 0.321 PREDICTED: tripartite motif-containing protein 64B-... TRIM64 0.315 tripartite motif-containing 64 LOC646754 0.295 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.295 PREDICTED: tripartite motif-containing protein 64C-... LOC646754 0.295 PREDICTED: tripartite motif-containing protein 64C-... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.