Search of human proteins with 19923919

Search of human proteins with 19923919

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923919 receptor accessory protein 6 [Homo sapiens]
         (184 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923919 receptor accessory protein 6 [Homo sapiens]               376   e-105
gi|115430112 receptor accessory protein 5 [Homo sapiens]              230   5e-61
gi|20149695 receptor accessory protein 4 [Homo sapiens]                87   8e-18
gi|12597657 receptor accessory protein 1 [Homo sapiens]                84   7e-17
gi|42476206 receptor accessory protein 2 [Homo sapiens]                80   1e-15
gi|47679089 receptor accessory protein 3 [Homo sapiens]                73   2e-13
gi|149363674 hypothetical protein LOC25758 [Homo sapiens]              33   0.18 
gi|166795299 solute carrier family 2 (facilitated glucose transp...    31   0.69 
gi|222831575 solute carrier organic anion transporter family, me...    28   3.4  
gi|222831573 solute carrier organic anion transporter family, me...    28   3.4  
gi|38679890 solute carrier organic anion transporter family, mem...    28   5.8  

>gi|19923919 receptor accessory protein 6 [Homo sapiens]
          Length = 184

 Score =  376 bits (966), Expect = e-105
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MDGLRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNL 60
           MDGLRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNL
Sbjct: 1   MDGLRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNL 60

Query: 61  IGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFL 120
           IGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFL
Sbjct: 61  IGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFL 120

Query: 121 LFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVKPSQTPQ 180
           LFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVKPSQTPQ
Sbjct: 121 LFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVKPSQTPQ 180

Query: 181 PKDK 184
           PKDK
Sbjct: 181 PKDK 184


>gi|115430112 receptor accessory protein 5 [Homo sapiens]
          Length = 189

 Score =  230 bits (587), Expect = 5e-61
 Identities = 102/171 (59%), Positives = 135/171 (78%)

Query: 4   LRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNLIGF 63
           +R+R + FL ++N +T++L  LEAKTGV + ++A G + L++LYL+FGYGASLLCNLIGF
Sbjct: 5   MRERFDRFLHEKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIGF 64

Query: 64  VYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFLLFC 123
            YPAY SIKAIESP+K+DDT WLTYWVVY +F +AEFFSD+ LSWFPFYY+ KC FLL+C
Sbjct: 65  GYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGFLLWC 124

Query: 124 MAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVK 174
           MAP P NGA +LY+R++RP FL+H   +D ++ DL  +A + A  IT+  K
Sbjct: 125 MAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKETADAITKEAK 175


>gi|20149695 receptor accessory protein 4 [Homo sapiens]
          Length = 257

 Score = 87.0 bits (214), Expect = 8e-18
 Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 5/101 (4%)

Query: 56  LLCNLI----GFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPF 111
           ++C L+    G + PAYAS KA+++ +  +   W+ YW+V+ALF  AE  +D+ +SWFPF
Sbjct: 5   MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPF 64

Query: 112 YYVGKCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVD 152
           YY  K AF+L+ ++P    GA +LY++ V P   RH   +D
Sbjct: 65  YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEID 104


>gi|12597657 receptor accessory protein 1 [Homo sapiens]
          Length = 201

 Score = 84.0 bits (206), Expect = 7e-17
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 56  LLCNLIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVG 115
           L+  + G +YPAY S KA++S    +   W+ YW+++ALF  AE F+D+ L WFPFYY  
Sbjct: 9   LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68

Query: 116 KCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDA 165
           K AF+ + ++P    G+ +LY++ V P        +D  +     R+ DA
Sbjct: 69  KIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDA 117


>gi|42476206 receptor accessory protein 2 [Homo sapiens]
          Length = 252

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 35/109 (32%), Positives = 65/109 (59%), Gaps = 1/109 (0%)

Query: 56  LLCNLIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVG 115
           L+  + G +YPAY+S KA+++ +  +   W+ YW+V+A F  AE  +D++LSWFPFY+  
Sbjct: 9   LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68

Query: 116 KCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALD 164
           K AF+++ ++P    G+ +LY++ V P        +D  +     ++ +
Sbjct: 69  KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYE 116


>gi|47679089 receptor accessory protein 3 [Homo sapiens]
          Length = 255

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 60  LIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAF 119
           + G +YPAY S KA+++ +  +   W+ YW+V+AL+ + E  +D  ++WFP YY  K AF
Sbjct: 13  VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72

Query: 120 LLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVD 152
           +++ ++P    GA ++Y++ + PL       +D
Sbjct: 73  VIWLLSPYT-KGASLIYRKFLHPLLSSKEREID 104


>gi|149363674 hypothetical protein LOC25758 [Homo sapiens]
          Length = 1855

 Score = 32.7 bits (73), Expect = 0.18
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 16   NLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNLIGF--VYPAYASIKA 73
            NL  +++    A   V   Y+     T L+  +     + L   L+GF   YP     + 
Sbjct: 990  NLTIQIVSTSNASQAVTLVYVVGNQSTFLNGTVASSLLSQLSAELVGFYLTYPPLTIAEP 1049

Query: 74   IESPSKDDDTVWLTYWVVYALFGL 97
            +E P+ D       YWV+  L G+
Sbjct: 1050 LEYPNLDISETTRDYWVITVLQGV 1073


>gi|166795299 solute carrier family 2 (facilitated glucose
           transporter), member 1 [Homo sapiens]
          Length = 492

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 40  AVTLLSLYLLFGYGASLLCNLIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAE 99
           A T++SL+++   G   L +LIG    A  +I    + +  +   W++Y  + A+FG   
Sbjct: 319 AFTVVSLFVVERAGRRTL-HLIGLAGMAGCAILMTIALALLEQLPWMSYLSIVAIFGFVA 377

Query: 100 FFSDLLLSWFPFYYVGKCAFLLFCMAPRP 128
           FF ++     P++ V +    LF   PRP
Sbjct: 378 FF-EVGPGPIPWFIVAE----LFSQGPRP 401


>gi|222831575 solute carrier organic anion transporter family,
           member 3A1 isoform 1 [Homo sapiens]
          Length = 710

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 41  VTLLSLYLLFGYGASLLCNLIGFVYPAYASIKAIESPSKD---DDTVWL-TYWVVYALFG 96
           + +L   L+FG     +  L  F    Y     I++ + D   DD  W+  +W  + L G
Sbjct: 215 IGILFTMLVFGPACGFI--LGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCG 272

Query: 97  LAEFFSDLLLSWFP 110
              FFS LL+  FP
Sbjct: 273 ALLFFSSLLMFGFP 286


>gi|222831573 solute carrier organic anion transporter family,
           member 3A1 isoform 2 [Homo sapiens]
          Length = 692

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 41  VTLLSLYLLFGYGASLLCNLIGFVYPAYASIKAIESPSKD---DDTVWL-TYWVVYALFG 96
           + +L   L+FG     +  L  F    Y     I++ + D   DD  W+  +W  + L G
Sbjct: 215 IGILFTMLVFGPACGFI--LGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCG 272

Query: 97  LAEFFSDLLLSWFP 110
              FFS LL+  FP
Sbjct: 273 ALLFFSSLLMFGFP 286


>gi|38679890 solute carrier organic anion transporter family, member
           4C1 [Homo sapiens]
          Length = 724

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 45  SLYLLFGYGASLLCNLIGFV-----YPAYASIKAIESPS-KDDDTVWL-TYWVVYALFGL 97
           SLY+  GY  S+L   IG+V        Y  +   ES    +DD  WL  +W+ + L  +
Sbjct: 264 SLYIGTGYAMSILGPAIGYVLGGQLLTIYIDVAMGESTDVTEDDPRWLGAWWIGFLLSWI 323

Query: 98  AEFFSDLLLSWFPFYYVG 115
             +   +  S FP +  G
Sbjct: 324 FAWSLIIPFSCFPKHLPG 341


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,656,748
Number of Sequences: 37866
Number of extensions: 261353
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 13
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.