Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC13A1 Sequence: fasta or formatted (595aa) NCBI GI: 19923838
Description:

solute carrier family 13 (sodium/sulfate symporters), member 1

Referenced in:

Kidney
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         45           2
 C cysteine            1.8         11           1
 D aspartate           1.8         11           1
 E glutamate           4.7         28           2
 F phenylalanine       6.6         39           2
 G glycine             5.9         35           3
 H histidine           1.3          8           1
 I isoleucine          7.6         45           2
 K lysine              5.4         32           2
 L leucine            12.6         75           3
 M methionine          3.7         22           2
 N asparagine          3.7         22           2
 P proline             5.7         34           2
 Q glutamine           1.7         10           2
 R arginine            1.8         11           2
 S serine              7.1         42           2
 T threonine           8.1         48           2
 V valine              7.2         43           2
 W tryptophan          2.7         16           1
 Y tyrosine            3.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 13 (sodium/sulfate symporters)... 
SLC13A4               0.477   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A2               0.420   solute carrier family 13, member 2 isoform b 
SLC13A2               0.401   solute carrier family 13, member 2 isoform a 
SLC13A5               0.397   solute carrier family 13, member 5 isoform a 
SLC13A3               0.373   solute carrier family 13 member 3 isoform a 
SLC13A2               0.365   solute carrier family 13, member 2 isoform c 
SLC13A3               0.351   solute carrier family 13 member 3 isoform b 
SLC13A5               0.322   solute carrier family 13, member 5 isoform b 
OCA2                  0.023   oculocutaneous albinism II 
MUC4                  0.007   mucin 4 isoform a 
SBSN                  0.006   suprabasin 
LOC100289996          0.005   PREDICTED: hypothetical protein XP_002347212 
LOC100287396          0.005   PREDICTED: hypothetical protein XP_002343076 
SMPD4                 0.004   sphingomyelin phosphodiesterase 4 isoform 2 
SMPD4                 0.004   sphingomyelin phosphodiesterase 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press