Guide to the Human Genome
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Name: RPS6KC1 Sequence: fasta or formatted (1066aa) NCBI GI: 19923723
Description:

ribosomal protein S6 kinase, 52kDa, polypeptide 1 isoform a

Referenced in:

Ribosomes
ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [1054aa] ribosomal protein S6 kinase, 52kDa, polypeptide 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         66           3
 C cysteine            1.5         16           1
 D aspartate           7.2         77           2
 E glutamate           9.8        105           3
 F phenylalanine       4.4         47           2
 G glycine             5.5         59           2
 H histidine           1.8         19           1
 I isoleucine          4.2         45           2
 K lysine              5.8         62           2
 L leucine            10.2        109           3
 M methionine          1.4         15           1
 N asparagine          3.0         32           2
 P proline             5.4         58           2
 Q glutamine           3.3         35           2
 R arginine            5.2         55           2
 S serine             11.7        125           3
 T threonine           5.2         55           2
 V valine              5.0         53           2
 W tryptophan          0.9         10           2
 Y tyrosine            2.2         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 
RPS6KC1               0.985   ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...
RPS6KL1               0.088   ribosomal protein S6 kinase-like 1 
SNX15                 0.084   sorting nexin 15 isoform A 
SNX15                 0.066   sorting nexin 15 isoform B 
RPS6KA2               0.048   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
RPS6KA2               0.048   ribosomal protein S6 kinase, 90kDa, polypeptide 2 is...
RPS6KA3               0.046   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
RPS6KA1               0.043   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
RPS6KA1               0.043   ribosomal protein S6 kinase, 90kDa, polypeptide 1 is...
RPS6KA6               0.042   ribosomal protein S6 kinase polypeptide 6 
RPS6KB1               0.042   ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Ho...
RPS6KB2               0.039   ribosomal protein S6 kinase, 70kDa, polypeptide 2 [H...
RPS6KA4               0.038   ribosomal protein S6 kinase, 90kDa, polypeptide 4 is...
RPS6KA4               0.038   ribosomal protein S6 kinase, 90kDa, polypeptide 4 iso...
CDC42BPG              0.038   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
CDC42BPA              0.035   CDC42-binding protein kinase alpha isoform B 
CDC42BPA              0.035   CDC42-binding protein kinase alpha isoform A 
MAST2                 0.034   microtubule associated serine/threonine kinase 2 [H...
PKN2                  0.034   protein kinase N2 
MAST1                 0.034   microtubule associated serine/threonine kinase 1 [Ho...
MAST3                 0.034   microtubule associated serine/threonine kinase 3 [H...
DMPK                  0.034   myotonic dystrophy protein kinase isoform 1 
DMPK                  0.034   myotonic dystrophy protein kinase isoform 4 
DMPK                  0.034   myotonic dystrophy protein kinase isoform 3 
DMPK                  0.034   myotonic dystrophy protein kinase isoform 2 
RPS6KA5               0.034   ribosomal protein S6 kinase, polypeptide 5 isoform b...
RPS6KA5               0.034   ribosomal protein S6 kinase, polypeptide 5 isoform a...
ROCK2                 0.034   Rho-associated, coiled-coil containing protein kinas...
CDC42BPB              0.033   CDC42-binding protein kinase beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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