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Search of human proteins with 19923359
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923359 AMP-activated protein kinase beta 1 non-catalytic
subunit [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923359 AMP-activated protein kinase beta 1 non-catalytic su... 563 e-161
gi|4885561 AMP-activated protein kinase beta 2 non-catalytic sub... 391 e-109
gi|71725360 zinc finger protein 609 [Homo sapiens] 33 0.20
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens] 30 2.2
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens] 30 2.2
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens] 30 2.2
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens] 30 2.2
gi|4757878 budding uninhibited by benzimidazoles 1 [Homo sapiens] 30 2.2
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 2.2
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 2.2
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 2.2
gi|7662018 PHD finger protein 3 [Homo sapiens] 30 2.2
gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [H... 30 2.9
gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens] 30 2.9
gi|50592998 delta-tubulin [Homo sapiens] 29 3.8
gi|119395738 insulin receptor isoform Short precursor [Homo sapi... 29 4.9
gi|119395736 insulin receptor isoform Long precursor [Homo sapiens] 29 4.9
gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Hom... 28 6.5
gi|188536004 zinc finger protein 469 [Homo sapiens] 28 6.5
gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens] 28 6.5
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens] 28 6.5
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens] 28 8.4
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 28 8.4
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens] 28 8.4
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 28 8.4
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ... 28 8.4
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 28 8.4
gi|139394599 hypermethylated in cancer 2 [Homo sapiens] 28 8.4
>gi|19923359 AMP-activated protein kinase beta 1 non-catalytic
subunit [Homo sapiens]
Length = 270
Score = 563 bits (1451), Expect = e-161
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 60
MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
Sbjct: 1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 60
Query: 61 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE 120
LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE
Sbjct: 61 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAILDLPE 120
Query: 121 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS 180
GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS
Sbjct: 121 GEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELS 180
Query: 181 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY 240
SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY
Sbjct: 181 SSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLY 240
Query: 241 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270
ALSIKDGVMVLSATHRYKKKYVTTLLYKPI
Sbjct: 241 ALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270
>gi|4885561 AMP-activated protein kinase beta 2 non-catalytic
subunit [Homo sapiens]
Length = 272
Score = 391 bits (1005), Expect = e-109
Identities = 192/273 (70%), Positives = 223/273 (81%), Gaps = 4/273 (1%)
Query: 1 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 60
MGNT+S+R + ERHG K R + +GG G KI++ S +D +F + K P +EF
Sbjct: 1 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF 59
Query: 61 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP 119
++WQ DLE + K QARPTV RW+ GGKEV++SGSFNNWS K+PL +SHN+FVAILDLP
Sbjct: 60 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP 119
Query: 120 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- 177
EGEHQYKFFVDGQW HDPSEP+VTSQLGT+NN+I VKK+DFEVFDAL +DS + S+ S
Sbjct: 120 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR 179
Query: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 237
+LSSSPPGPY QE Y + EERF++PPILPPHLLQVILNKDT ISCDPALLPEPNHVMLN
Sbjct: 180 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 239
Query: 238 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 270
HLYALSIKD VMVLSATHRYKKKYVTTLLYKPI
Sbjct: 240 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 272
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 33.5 bits (75), Expect = 0.20
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 195 KPEERFRAPPILPPHLLQVILNKD--------------TGI-SCDPALLPEP-------- 231
K E P +LP HLL ++N D G+ +CD AL EP
Sbjct: 249 KMESPVSTPAVLPIHLLVPVVNNDISSPCEQIMVRTRSVGVNTCDVALATEPECLGPCEP 308
Query: 232 -NHVMLNHLYALSIKDGVMVLSATHRYKKKYVTTLL 266
V L + +DG++V++ T R K YV TLL
Sbjct: 309 GTSVNLEGIVWQETEDGMLVVNVTWR-NKTYVGTLL 343
>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
Length = 1863
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 100 WSKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTD 159
W +L RS + V L LP+ H+YKF V + SEP S+L TV + K +
Sbjct: 1378 WKELATCRSTSFNVQDL-LPD--HEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDE 1434
Query: 160 FEVFD 164
EV D
Sbjct: 1435 VEVSD 1439
>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
Length = 1914
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 100 WSKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTD 159
W +L RS + V L LP+ H+YKF V + SEP S+L TV + K +
Sbjct: 1378 WKELATCRSTSFNVQDL-LPD--HEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDE 1434
Query: 160 FEVFD 164
EV D
Sbjct: 1435 VEVSD 1439
>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
Length = 1794
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 100 WSKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTD 159
W +L RS + V L LP+ H+YKF V + SEP S+L TV + K +
Sbjct: 1309 WKELATCRSTSFNVQDL-LPD--HEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDE 1365
Query: 160 FEVFD 164
EV D
Sbjct: 1366 VEVSD 1370
>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
Length = 1845
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 100 WSKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTD 159
W +L RS + V L LP+ H+YKF V + SEP S+L TV + K +
Sbjct: 1309 WKELATCRSTSFNVQDL-LPD--HEYKFRVRAINVYGTSEPSQESELTTVGEKPEEPKDE 1365
Query: 160 FEVFD 164
EV D
Sbjct: 1366 VEVSD 1370
>gi|4757878 budding uninhibited by benzimidazoles 1 [Homo sapiens]
Length = 1085
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 184 PGPYHQEPYVCKPEERFRAPPILPP---HLLQVILNKDTGISCDPALLPEPNHVMLNHLY 240
P Y Q P + R APP++PP + +++ T S P + P + + ++
Sbjct: 341 PVTYQQTPVNMEKNPR-EAPPVVPPLANAISAALVSPATSQSIAPPV-PLKAQTVTDSMF 398
Query: 241 ALSIKDGVMVLSATHRYK 258
A++ KD V +TH +K
Sbjct: 399 AVASKDAGCVNKSTHEFK 416
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 30.0 bits (66), Expect = 2.2
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
+ EG + D ++ DP NN Q+ +++D ++ + + SD
Sbjct: 1 MSEGVDLIDIYADEEFNQDPE----------FNNTDQI-----DLYDDVLTATSQPSDDR 45
Query: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPIL 206
S+ PP P QEP P+ + P IL
Sbjct: 46 SSSTEPPPPVRQEP---SPKPNNKTPAIL 71
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 30.0 bits (66), Expect = 2.2
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
+ EG + D ++ DP NN Q+ +++D ++ + + SD
Sbjct: 1 MSEGVDLIDIYADEEFNQDPE----------FNNTDQI-----DLYDDVLTATSQPSDDR 45
Query: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPIL 206
S+ PP P QEP P+ + P IL
Sbjct: 46 SSSTEPPPPVRQEP---SPKPNNKTPAIL 71
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 30.0 bits (66), Expect = 2.2
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 118 LPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS 177
+ EG + D ++ DP NN Q+ +++D ++ + + SD
Sbjct: 44 MSEGVDLIDIYADEEFNQDPE----------FNNTDQI-----DLYDDVLTATSQPSDDR 88
Query: 178 ELSSSPPGPYHQEPYVCKPEERFRAPPIL 206
S+ PP P QEP P+ + P IL
Sbjct: 89 SSSTEPPPPVRQEP---SPKPNNKTPAIL 114
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 175 DVSELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLL 211
++ L SSPPG P P+ F PP LPP LL
Sbjct: 1804 NLQHLKSSPPGFPFPGPPNFPPQSMFGFPPHLPPPLL 1840
>gi|239743228 PREDICTED: WBSCR19-like protein 8-like isoform 2 [Homo
sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 33 RPKILMDSPEDADLFHSEEIKAPEKEEFLAWQHDLEVNDK 72
R ++L+ PE + F+ ++ P + FLAW DL V+DK
Sbjct: 185 RRRVLLVLPEHHEAFN-RLLEDPVIKRFLAWDKDLRVSDK 223
>gi|239508903 PREDICTED: WBSCR19-like protein 8-like [Homo sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 2.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 33 RPKILMDSPEDADLFHSEEIKAPEKEEFLAWQHDLEVNDK 72
R ++L+ PE + F+ ++ P + FLAW DL V+DK
Sbjct: 185 RRRVLLVLPEHHEAFN-RLLEDPVIKRFLAWDKDLRVSDK 223
>gi|50592998 delta-tubulin [Homo sapiens]
Length = 453
Score = 29.3 bits (64), Expect = 3.8
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 141 IVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYVCKPEERF 200
IVT QLG N I FEVFDAL+ DS + + + E Y +ERF
Sbjct: 3 IVTVQLGQCGNQI-----GFEVFDALLSDSHSSQGLCSMREN-------EAYQASCKERF 50
>gi|119395738 insulin receptor isoform Short precursor [Homo sapiens]
Length = 1370
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 43 DADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSK 102
+ FHSEE KAPE EE + + E + P R GG++ S F +
Sbjct: 1288 EVSFFHSEENKAPESEEL---EMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYE 1344
Query: 103 LPLTRSHNN 111
+ +H N
Sbjct: 1345 EHIPYTHMN 1353
>gi|119395736 insulin receptor isoform Long precursor [Homo sapiens]
Length = 1382
Score = 28.9 bits (63), Expect = 4.9
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 43 DADLFHSEEIKAPEKEEFLAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWSK 102
+ FHSEE KAPE EE + + E + P R GG++ S F +
Sbjct: 1300 EVSFFHSEENKAPESEEL---EMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYE 1356
Query: 103 LPLTRSHNN 111
+ +H N
Sbjct: 1357 EHIPYTHMN 1365
>gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Homo
sapiens]
Length = 1103
Score = 28.5 bits (62), Expect = 6.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 191 PYVCKPEERFRAPPILPPHLLQVILNKDTGISCDP----ALLPEP 231
P+ C P RA P L L LN+D G++ P ALLPEP
Sbjct: 61 PWACDPIFS-RARPDLAARLAAARLNRDPGLAGGPRFEVALLPEP 104
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 28.5 bits (62), Expect = 6.5
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 173 CSDVSELSSSPPGPYHQEPYVCKP--EERFRAPPILPPHLLQVILNKDTGISCDPALLPE 230
CS +S +SSSP P +E + P F PP P ++TG P PE
Sbjct: 605 CSSLSPMSSSPANPSSEESQLPGPLGPSAFFHPPTHP---------QETG---SPFPSPE 652
Query: 231 PNHVMLNH 238
P H + H
Sbjct: 653 PPHSLPTH 660
>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 28.5 bits (62), Expect = 6.5
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 6 SERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIK----APEKEEFL 61
S + + G +P D SG K G KI +PE + S ++ +PE+ + L
Sbjct: 635 SNAGSSKEEAGETSPA-DESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL 693
Query: 62 AWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGS 96
A K AR + W G + + +G+
Sbjct: 694 A---------KESGLARTDIVSWFGDTRYAWKNGN 719
>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 28.5 bits (62), Expect = 6.5
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 6 SERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIK----APEKEEFL 61
S + + G +P D SG K G KI +PE + S ++ +PE+ + L
Sbjct: 635 SNAGSSKEEAGETSPA-DESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL 693
Query: 62 AWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGS 96
A K AR + W G + + +G+
Sbjct: 694 A---------KESGLARTDIVSWFGDTRYAWKNGN 719
>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 8.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 178 ELSSSPPGPYH-QEPYVCKPEERFRAPP-ILPPHLLQVILNKDTGISCDPALLPEPNHVM 235
+L S P P P+ KP++ + P IL P L+ L + P L P P+H
Sbjct: 73 DLESHGPCPAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLGPVPSHAP 132
Query: 236 LNHLYALSIK 245
+H L+++
Sbjct: 133 ASHYTHLALQ 142
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 28.1 bits (61), Expect = 8.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 199 RFRAPP-ILPPHLLQV--ILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSATH 255
R + PP I L QV ILN + CD P P ALS+ + V +L TH
Sbjct: 1741 RVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTH 1800
>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 8.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 178 ELSSSPPGPYH-QEPYVCKPEERFRAPP-ILPPHLLQVILNKDTGISCDPALLPEPNHVM 235
+L S P P P+ KP++ + P IL P L+ L + P L P P+H
Sbjct: 73 DLESHGPCPAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLGPVPSHAP 132
Query: 236 LNHLYALSIK 245
+H L+++
Sbjct: 133 ASHYTHLALQ 142
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 28.1 bits (61), Expect = 8.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 199 RFRAPP-ILPPHLLQV--ILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSATH 255
R + PP I L QV ILN + CD P P ALS+ + V +L TH
Sbjct: 2932 RVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTH 2991
>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 8.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 178 ELSSSPPGPYH-QEPYVCKPEERFRAPP-ILPPHLLQVILNKDTGISCDPALLPEPNHVM 235
+L S P P P+ KP++ + P IL P L+ L + P L P P+H
Sbjct: 73 DLESHGPCPAKCNSPWTPKPDQTLQTPVGILNPLLMPHPLGLSGSLRPGPGLGPVPSHAP 132
Query: 236 LNHLYALSIK 245
+H L+++
Sbjct: 133 ASHYTHLALQ 142
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 28.1 bits (61), Expect = 8.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 199 RFRAPP-ILPPHLLQV--ILNKDTGISCDPALLPEPNHVMLNHLYALSIKDGVMVLSATH 255
R + PP I L QV ILN + CD P P ALS+ + V +L TH
Sbjct: 1650 RVQVPPRIAGLDLEQVTAILNSSVSLPCDVHAHPNPEVTWYKDSQALSLGEEVFLLPGTH 1709
>gi|139394599 hypermethylated in cancer 2 [Homo sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 181 SSPPGPYHQEPYVCKPEE 198
+ P GPY + PY CK EE
Sbjct: 382 AGPSGPYGEPPYPCKEEE 399
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,611,482
Number of Sequences: 37866
Number of extensions: 640432
Number of successful extensions: 1680
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 41
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.